BAC Information

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BAC

Clone NameB6Ng01-255O13
ChromosomeX (Build37)
Map Location 5,983,345 - 6,096,198
singlet/doubletdoublet
Overlap geneShroom4
Upstream geneMycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751, Nudt10, Bmp15
Downstream geneLOC100043937, Dgkk, Ccnb3, Akap4, Clcn5, Usp27x, 2010204K13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255O13.bB6Ng01-255O13.g
ACCGA062002GA062003
length1,160544
definitionB6Ng01-255O13.b B6Ng01-255O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,095,033 - 6,096,198)(5,983,345 - 5,983,894)
sequence
gaattctggctctactactttctagctgtgagatcctgagaaggttacct
aacactggtggcatcaaatttccttgtatgcatactgtagagagcaaaag
cacccacctcgcctgattgtttcatcacccgtttgagggctctgggttct
tttttttttttttttttttttccattttatccttttattttttttcccat
tttttattaggtatttagctcatttacatttccaatgctataccaaaagt
cccccataggttcttaactcagtatgacttctgattattataacaaggag
gttggtgctgaaaacctgaatgatggcttccagctcaaaattctgtaatc
agcatccctaattttaaacatatgaagtaagtacaaagtatattatcttc
atctcttcaacacattcctagcatactacttgccaatgggcattctgcaa
aagctaggaatgtgtttactaatctagcacaatgtaaacattcccttcga
gcagggtaatcttggcagaagacgttttcaggctggggaactctggaaaa
aacaaaactaggaggaagagccactaggataggcaaagcaaagcagggcc
ctgaagacctggctttctagtgaattttgtacataatgttctacttagca
cagaagtgggttccacctgttagagtattaattccatctagagtaatggg
gacatctcatccatcgttaacctattccccaagcacttaatgtactttag
tatgcacagaacaataaacacactaagtggcagagatacacaaattaaaa
aagctctcagctcccagccccagaggggaattattgtctaaagtttatat
gcccactgagagatctggttaaataaaatccagcccacccgcattaagtg
tctagggaatatgggaagtaagaatgattaaatgatagactcttagggga
tagaagtctctaagtggagatcactaggggctgacttttaccgtggctat
gtttatactctttccttttacttttccctcagtttttttatcacaggcct
ctgactggtgcccacaccagttgagaataactgctttaggtggctcagct
tgagactgtcagttaggagagatcctttggagttgaagaaaatatattaa
tttcaggatt
actacatcttgtccattgttctctctcctcccctcccctctcctcttcaa
atttctggtgctcaagatcaaacctagggcagtagacaagtgttctacta
ctgagctaaacgtccctattccttggggctctcttaagttatggagtcca
tacacaatatagccatctcctggaggcagttatgaaaattaagtgagacc
tttttttttgtgctgagaattgttatctagctacagaccattcttttaaa
aacatatatctgaagggggctggctcagtagttaaaagggcttatagctc
ttgcagatgaccgtggtttgattcccattatccacatagcaacaaatcca
tatcacaggtccagatctgttgcccttcttttgacctcatcaggctcctg
tatatacatgtgttcatgtgcatgctcatacacactcatgtgattttttt
tggtagcaatgtcataagacactgtctctgtgtcctttaagtaagcactg
aggaaagtcatatgatgaagtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_6095033_6096198
seq2: B6Ng01-255O13.b_47_1206 (reverse)

seq1  AATCCTG-AATTAATATATTTTTTCTTTCAACT-CAAAAGATCCTTCCTA  48
      ||||||| ||||||||||||||    ||||||| |||| ||||  |||||
seq2  AATCCTGAAATTAATATATTTT---CTTCAACTCCAAAGGATCTCTCCTA  47

seq1  ACTGACAGTTCTCAAAAGCTGAGCAACCTAAAGCAG-TATTCT-AACTGG  96
      |||||||| ||||  ||||||||| ||||||||||| |||||| ||||||
seq2  ACTGACAG-TCTC--AAGCTGAGCCACCTAAAGCAGTTATTCTCAACTGG  94

seq1  TGTGGGCACAGGTTCAGAGG-CTGTGAT-AAAAGACTGAGGGAAAAGGTT  144
      |||||||||  | ||||||| ||||||| |||| |||||||||||||  |
seq2  TGTGGGCACCAG-TCAGAGGCCTGTGATAAAAAAACTGAGGGAAAAG--T  141

seq1  AAAAGGAAAGAAGTATAAACATAGCCACGGTAAAAGTCAGCCCCTAGTGA  194
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAG-AGTATAAACATAGCCACGGTAAAAGTCAGCCCCTAGTGA  190

seq1  TCT-CACTTAGAGACTTCTATCCCCTAAGAGTTCTATCATTTAATCATTC  243
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTCCACTTAGAGACTTCTATCCCCTAAGAG-TCTATCATTTAATCATTC  239

seq1  TTACTTCCCATATTCCCTAGAACACTTAATGCGGGTGGGCTGGATTTTTA  293
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  TTACTTCCCATATTCCCTAG-ACACTTAATGCGGGTGGGCTGGA-TTTTA  287

seq1  TTTAACCAGATCTCTCAGTGGGCATATAAACTTTAGACAATAATTCCCTT  343
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTAACCAGATCTCTCAGTGGGCATATAAACTTTAGACAATAATTCCCCT  337

seq1  CTGGGGCTGGGAGCTGAGAGCTTTTTTAATTTGTGTATCTCTGCCACTTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTGGGAGCTGAGAGCTTTTTTAATTTGTGTATCTCTGCCACTTA  387

seq1  GTGTGTTTATTGTTCTGTGCATACTAAAGTACATTAAGTGCTTGGGGAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTATTGTTCTGTGCATACTAAAGTACATTAAGTGCTTGGGGAAT  437

seq1  AGGTTAACGATGGATGAGATGTCCCCATTACTCTAGATGGAATTAATACT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAACGATGGATGAGATGTCCCCATTACTCTAGATGGAATTAATACT  487

seq1  CTAACAGGTGGAACCCACTTCTGTGCTAAGTAGAACATTATGTACAAAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGGTGGAACCCACTTCTGTGCTAAGTAGAACATTATGTACAAAAT  537

seq1  TCACTAGAAAGCCAGGTCTTCAGGGCCCTGCTTTGCTTTGCCTATCCTAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGAAAGCCAGGTCTTCAGGGCCCTGCTTTGCTTTGCCTATCCTAG  587

seq1  TGGCTCTTCCTCCTAGTTTTGTTTTTTCCAGAGTTCCCCAGCCTGAAAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTCCTCCTAGTTTTGTTTTTTCCAGAGTTCCCCAGCCTGAAAAC  637

seq1  GTCTTCTGCCAAGATTACCCTGCTCGAAGGGAATGTTTACATTGTGCTAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGCCAAGATTACCCTGCTCGAAGGGAATGTTTACATTGTGCTAG  687

seq1  ATTAGTAAACACATTCCTAGCTTTTGCAGAATGCCCATTGGCAAGTAGTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAAACACATTCCTAGCTTTTGCAGAATGCCCATTGGCAAGTAGTA  737

seq1  TGCTAGGAATGTGTTGAAGAGATGAAGATAATATACTTTGTACTTACTTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAATGTGTTGAAGAGATGAAGATAATATACTTTGTACTTACTTC  787

seq1  ATATGTTTAAAATTAGGGATGCTGATTACAGAATTTTGAGCTGGAAGCCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTAAAATTAGGGATGCTGATTACAGAATTTTGAGCTGGAAGCCA  837

seq1  TCATTCAGGTTTTCAGCACCAACCTCCTTGTTATAATAATCAGAAGTCAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGGTTTTCAGCACCAACCTCCTTGTTATAATAATCAGAAGTCAT  887

seq1  ACTGAGTTAAGAACCTATGGGGGACTTTTGGTATAGCATTGGAAATGTAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTAAGAACCTATGGGGGACTTTTGGTATAGCATTGGAAATGTAA  937

seq1  ATGAGCTAAATACCTAATAAAAAATGGGAAAAAAAATAAAAGGATAAAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTAAATACCTAATAAAAAATGGGAAAAAAAATAAAAGGATAAAAT  987

seq1  GGAAAAAAAAAAAAAAAAAAAAAAGAACCCAGAGCCCTCAAACGGGTGAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAAAAAAAAAAAAAAAGAACCCAGAGCCCTCAAACGGGTGAT  1037

seq1  GAAACAATCAGGCGAGGTGGGTGCTTTTGCTCTCTACAGTATGCATACAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATCAGGCGAGGTGGGTGCTTTTGCTCTCTACAGTATGCATACAA  1087

seq1  GGAAATTTGATGCCACCAGTGTTAGGTAACCTTCTCAGGATCTCACAGCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTGATGCCACCAGTGTTAGGTAACCTTCTCAGGATCTCACAGCT  1137

seq1  AGAAAGTAGTAGAGCCAGAATTC  1166
      |||||||||||||||||||||||
seq2  AGAAAGTAGTAGAGCCAGAATTC  1160

seq1: chrX_5983345_5983894
seq2: B6Ng01-255O13.g_68_617

seq1  GAATTCACTACATCTTGTCCATTGTTCTCTCTCCTCCCCTCCCCTCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACATCTTGTCCATTGTTCTCTCTCCTCCCCTCCCCTCTCCT  50

seq1  CTTCAAATTTCTGGTGCTCAAGATCAAACCTAGGGCAGTAGACAAGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATTTCTGGTGCTCAAGATCAAACCTAGGGCAGTAGACAAGTGTT  100

seq1  CTACTACTGAGCTAAACGTCCCTATTCCTTGGGGCTCTCTTAAGTTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTGAGCTAAACGTCCCTATTCCTTGGGGCTCTCTTAAGTTATGG  150

seq1  AGTCCATACACAATATAGCCATCTCCTGGAGGCAGTTATGAAAATTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATACACAATATAGCCATCTCCTGGAGGCAGTTATGAAAATTAAGT  200

seq1  GAGACCTTTTTTTTTGTGCTGAGAATTGTTATCTAGCTACAGACCATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTTTTTTTTGTGCTGAGAATTGTTATCTAGCTACAGACCATTCT  250

seq1  TTTAAAAACATATATCTGAAGGGGGCTGGCTCAGTAGTTAAAAGGGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACATATATCTGAAGGGGGCTGGCTCAGTAGTTAAAAGGGCTTA  300

seq1  TAGCTCTTGCAGATGACCGTGGTTTGATTCCCATTATCCACATAGCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTTGCAGATGACCGTGGTTTGATTCCCATTATCCACATAGCAACA  350

seq1  AATCCATATCACAGGTCCAGATCTGTTGCCCTTCTTTTGACCTCATCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATATCACAGGTCCAGATCTGTTGCCCTTCTTTTGACCTCATCAGG  400

seq1  CTCCTGTATATACATGTGTTCATGTGCATGCTCATACACACTCATGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTATATACATGTGTTCATGTGCATGCTCATACACACTCATGTGAT  450

seq1  TTTTTTTGGTAGCAATGTCATAAGACACTGTCTCTGTGTCCTTTAAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGGTAGCAATGTCATAAGACACTGTCTCTGTGTCCTTTAAGTAA  500

seq1  GCACTGAGGAAAGTCATATGATGAAGTGTGTGTGTGTGTGTGTGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAGGAAAGTCATATGATGAAGTGTGTGTGTGTGTGTGTGTGTGTG  550