BAC Information

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BAC

Clone NameB6Ng01-258A12
ChromosomeX (Build37)
Map Location 62,701,074 - 62,702,272
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040011, Ctag2
Downstream geneLOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258A12.bB6Ng01-258A12.g
ACCGA063575GA063576
length1,1881,168
definitionB6Ng01-258A12.b B6Ng01-258A12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgtaactcttcatctagtcactgggacttgtgaaattttact
tgtatatattagcatgttaattgatattgataatatgtaggtcttgttta
tgctgatattccttgctgaaacatccctgtgatgtctataatatacatat
tatagcatgcataattggaagctacagtattcagctgtgccataactctg
taatcttacacatatgcttccaaacaacaaaaactattctgatttcatat
tagagactttccattttatggataattactagccagctatgagagagtaa
cttcatcagtcttcaaatttgtaaaatgaaaaacataatttcattactat
gaacatgacttgccagtaaaatggctttggtttgaatataagggtgaata
gaaaaggaggggggaacagaaaagaaaaaagaaaataaataaagaatgag
attctaaaacccagaatactcatgatagcttgattggtatcagagaaatt
cttgaaggtagtcaggaattcaatgaagaattacaaagtaacactgaaat
aatttatataagattatgctatcaaacaagtgcaaggaagaaatacaagc
caattattatttcaatatttccattttaattgaactcaaaatgaactctt
tagtttatggaccacagttctttagcaagaggacaaaaatcctgtttaga
aggctgcctctaccatggaaggaagtaaaaactcatactggacagcttaa
cttttacctgccagattgtttcgatttttattgacttggtcatgaagtcg
gggcatgaacaggagaatactaatgagttgaaggtatcccttatcagggc
agagtttataccaatgactgagggaatctgagatgtacattaattaaaac
atcacagcatcaaaatgaaaccttgggtttgaaagtgtttggaaacccat
tttcatgtgttcctttaatccatgaaatatggacctgagggtactactgc
aaggcagacatgagctaaataaagtgttattttctcttagatactctaag
ggaagagatcttactgcacttctctatctgaaagcaagaaaactgtaaga
tgctgtgaggtggatcccagggaaagtatctgaaatatagctacggatac
ctgatgcatttgcctcaggggcaacaaatgggaattgt

gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaatgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcatatattaaacc
atccctgcatccccggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttattggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttagggcatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtatctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttacgtctcccttttcagttctgattttgttaat
taggattttgtctctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgatttgcttccttttttctagagct
tttagatgtgttgtcaagctgctagtatgtgctctctcacgtttattctg
gaggcactcagagctatgagtttccctctagaaatgctttcatgtgtccc
aaagtttagtacgtgtgcttcattcatttaaacctctaaaagtctttatt
tcttcttattcttcctggacagtatcatgagaagatgttgtcagtccacg
gaagtgcttccggatatatgatatataggttgtcatggagaacagccatt
agtcactgatactctata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_62701074_62702272
seq2: B6Ng01-258A12.b_45_1232

seq1  GAATTCACTGTAACTCTTCATCTAGTCACTGGGACTTGTGAAATTTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTAACTCTTCATCTAGTCACTGGGACTTGTGAAATTTTACT  50

seq1  TGTATATATTAGCATGTTAATTGATATTGATAATATGTAGGTCTTGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATTAGCATGTTAATTGATATTGATAATATGTAGGTCTTGTTTA  100

seq1  TGCTGATATTCCTTGCTGAAACATCCCTGTGATGTCTATAATATACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATATTCCTTGCTGAAACATCCCTGTGATGTCTATAATATACATAT  150

seq1  TATAGCATGCATAATTGGAAGCTACAGTATTCAGCTGTGCCATAACTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATGCATAATTGGAAGCTACAGTATTCAGCTGTGCCATAACTCTG  200

seq1  TAATCTTACACATATGCTTCCAAACAACAAAAACTATTCTGATTTCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTACACATATGCTTCCAAACAACAAAAACTATTCTGATTTCATAT  250

seq1  TAGAGACTTTCCATTTTATGGATAATTACTAGCCAGCTATGAGAGAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACTTTCCATTTTATGGATAATTACTAGCCAGCTATGAGAGAGTAA  300

seq1  CTTCATCAGTCTTCAAATTTGTAAAATGAAAAACATAATTTCATTACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCAGTCTTCAAATTTGTAAAATGAAAAACATAATTTCATTACTAT  350

seq1  GAACATGACTTGCCAGTAAAATGGCTTTGGTTTGAATATAAGGGTGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGACTTGCCAGTAAAATGGCTTTGGTTTGAATATAAGGGTGAATA  400

seq1  GAAAAGGAGGGGGGAACAGAAAAGAAAAAAGAAAATAAATAAAGAATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAGGGGGGAACAGAAAAGAAAAAAGAAAATAAATAAAGAATGAG  450

seq1  ATTCTAAAACCCAGAATACTCATGATAGCTTGATTGGTATCAGAGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAACCCAGAATACTCATGATAGCTTGATTGGTATCAGAGAAATT  500

seq1  CTTGAAGGTAGTCAGGAATTCAATGAAGAATTACAAAGTAACACTGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGTAGTCAGGAATTCAATGAAGAATTACAAAGTAACACTGAAAT  550

seq1  AATTTATATAAGATTATGCTATCAAACAAGTGCAAGGAAGAAATACAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATAAGATTATGCTATCAAACAAGTGCAAGGAAGAAATACAAGC  600

seq1  CAATTATTATTTCAATATTTCCATTTTAATTGAACTCAAAATGAACTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATTATTTCAATATTTCCATTTTAATTGAACTCAAAATGAACTCTT  650

seq1  TAGTTTATGGACCACAGTTCTTTAGCAAGAGGACAAAAATCCTGTTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATGGACCACAGTTCTTTAGCAAGAGGACAAAAATCCTGTTTAGA  700

seq1  AGGCTGCCTCTACCATGGAAGGAAGTAAAAACTCATACTGGACAGCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCCTCTACCATGGAAGGAAGTAAAAACTCATACTGGACAGCTTAA  750

seq1  CTTTTACCTGCCAGATTGTTTCGATTTTTATTGACTTGGTCATGAAGTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCTGCCAGATTGTTTCGATTTTTATTGACTTGGTCATGAAGTCG  800

seq1  GGGCATGAACAGGAGAATACTAATGAGTTGAAGGTATCCCTTATCAGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGAACAGGAGAATACTAATGAGTTGAAGGTATCCCTTATCAGGGC  850

seq1  AGAGTTTATACCAATGACTGAGGGAATCTGAGATGTACATTAATTAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTATACCAATGACTGAGGGAATCTGAGATGTACATTAATTAAAAC  900

seq1  ATCACAGCATCAAAATGAAACCTTGGGTTTGAAAGTGTTTGGAAACCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCATCAAAATGAAACCTTGGGTTTGAAAGTGTTTGGAAACCCAT  950

seq1  TTTCATGTGTTCCTTTAATCCATGAAATATGGACCTGAGGGTACTACTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTGTTCCTTTAATCCATGAAATATGGACCTGAGGGTACTACTGC  1000

seq1  AAGGCAGACATGAGCTAAATAAAG-GTGTATTTCTCTTAGATACTCTAA-  1048
      |||||||||||||||||||||||| ||   ||||||||||||||||||| 
seq2  AAGGCAGACATGAGCTAAATAAAGTGTTATTTTCTCTTAGATACTCTAAG  1050

seq1  GGAAGAGAATCTTAACTGCAACTTCTCTATCTGAAAGCAAAAGAAAAACT  1098
      ||||||| ||||| ||||| ||||||||||||||||||||    ||||||
seq2  GGAAGAG-ATCTT-ACTGC-ACTTCTCTATCTGAAAGCAA---GAAAACT  1094

seq1  GTAAGATGGCTGTGAGGTTGATTCCCCAGGGGAAAGTATCTG-AATATAG  1147
      ||||||| |||||||||| |||  |||| ||||||||||||| |||||||
seq2  GTAAGAT-GCTGTGAGGTGGAT--CCCA-GGGAAAGTATCTGAAATATAG  1140

seq1  CTACAGAATTAAACTGATGCATTGGCCTCAGGGGGCAACAAATGGAAATT  1197
      |||| ||    | |||||||||| |||||| |||||||||||||| ||||
seq2  CTACGGA---TACCTGATGCATTTGCCTCA-GGGGCAACAAATGGGAATT  1186

seq1  GT  1199
      ||
seq2  GT  1188


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