BAC Information

Click to search

BAC

Clone NameB6Ng01-260P08
ChromosomeX (Build37)1 (Build37)
Map Location 40,465,208 - 40,465,468154,049,276 - 154,050,346
singlet/doubletsingletsinglet
Overlap geneOdz1
Upstream geneStag2, LOC100039899, Sh2d1a
Downstream geneGm362, LOC100039977, LOC100039987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260P08.bB6Ng01-260P08.g
ACCGA065750GA065751
length9141,079
definitionB6Ng01-260P08.b B6Ng01-260P08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,465,208 - 40,465,468)(154,049,276 - 154,050,346)
sequence
gaattcactttgtagaccaggctggcctcaaactcagaaatccgcctgcc
tctgcctcccgagtgctgggattaaaggcgtgcaccaccacgcccggctt
attatcatttcttaatgtcactgtatatctgggtacatttttcagaattt
ctggacttttttgtgtccatttcctacttgctttcccaggctttggtccg
ggtggctttgtttttgtagtttctggtactagacaggcagaattcattct
attactaatatagacccacagctattcaagtatagttaatgtagtgtgtc
acagttttcaatctcagaaggttgtgtgtgtgtgtgtgtgtgtgtgtgaa
tgtctcacagttttcagtctcagaagattttatgtgtgtgtgtgtgttgt
gtgaaatatataaaaaaacaaggcacccatgctagcaccagctaatttct
agtatcacagtttccccgccgctagggtctccatggtccccaacctgcag
aggatcctgctcacattcccagccaaccaccccttgaggttagctgtcac
aaatccctgtaaacaggtaaaatcaaaactctagaggcctgtaatttatc
agtcagattaatattagtcaattctcaccccacgaaacacccgcacaatg
agctcaaaactcagttgatataaacacaagctacacacttagggtaaacg
catcctacttattatttaatcacctaagaaatcccaatacttatggctcc
caggactgtgtggttctggctcctcttcctctcctataggttccatcttg
tctcttcctctccatctccccctcttccctcagtctctaattctcacccc
accttctctttccactgccaatcataagctagccttacccttcacctgct
ttcacctacttaca
gaattccaagcccaggattggctcaaggactacgtagggcattggtgaag
gctaggaagcaaagtttgattatgcttaggtatttggcaagtcattgctt
tgaggcacctataacaaaacaatactgagaggaagcacacagatccattc
gcaaggacaagtttggagcatttgttatatgggatgccacagttccagga
gactaagtttccgtgaacatttcgcctcgggaatgtgttcaggtttctag
tcctgccacgcgtgtcactactagacttgatgtatcactctatgatcaca
gaaggaacggaagagagaaggcaaagacccatccttcctttgaaatctgg
ctgcatttattctctgtgggtcagaagtgggaaagggcttgcagcctcac
tttcatgatcccaagaattttgagaggggtagaaagattgggaaagggaa
gaagagaaagtacacatatgtattttaatatacacctacaaacacacata
catatatacacaaattcacacacacacaatacatacttatacacacttat
atgtgtatccataaacatatatatatatatacatatatgtgcatgtatac
acatgcacatacatatacacaaatatacataccatatatacatatacacc
cataccatatatacatatacaaatatgtatgaatgtatacatatacataa
atacacacatatataaatatataaacacacatacatatatgtgtgtgtat
attcctcaagacagagggatatttttgctaccgtacaccaacctgtgaga
gactttttcctttcttactctggaagctgactttcctcagtctgcctctt
tccctgtctgaggatgggtgaaatagcttcacatttcccctcaatgcatt
ctgttcacagaacagcagttcacaacttaagactctaggccagtcaaccg
tgacttaggcttgcttccctggatctgcttctgctggaataaactaaggg
tttggctttttctgtttcctcattacagatgtccatgggagtccaatgca
cgtaacctttggcaaccaagtctttgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_40465208_40465468
seq2: B6Ng01-260P08.b_52_445

seq1  TCACTTTGTAGACCAGGCTGGCCTCAAATTCAGAAATCCGCCTGCCTCTG  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTG  50

seq1  CCTCCCAAGTCCTGGGATTAAAGGCATGTGCCAGCACTGCCCGGCCGAGA  100
      |||||| ||| |||||||||||||| ||  ||| ||| |||||||    |
seq2  CCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCAC-GCCCGGC--TTA  97

seq1  AAATCAATTTTTAATGAAAGAAAAAA-----GAAATTTATGTATAACTTC  145
        |||| || ||||||  |    | |     | |  || |  | || |||
seq2  TTATCATTTCTTAATGTCACTGTATATCTGGGTACATTTTTCAGAATTTC  147

seq1  ATAAGTTTTAT-----AATTT--TATTTATTTTC----------------  172
         | |||| |      ||||  || ||  ||||                
seq2  TGGACTTTTTTGTGTCCATTTCCTACTTGCTTTCCCAGGCTTTGGTCCGG  197

seq1  ---------ATTATATAGTTT------------------TATTCATTC-A  194
                || | ||||||                   |||||||| |
seq2  GTGGCTTTGTTTTTGTAGTTTCTGGTACTAGACAGGCAGAATTCATTCTA  247

seq1  TGATTTATAAA-----ACAGAAAT--ATGTATTGTT-ATATACTAATGT-  235
      | | | ||| |     ||||  ||  | |||| ||| || || |  ||| 
seq2  TTACTAATATAGACCCACAGCTATTCAAGTATAGTTAATGTAGT-GTGTC  296

seq1  --AATTTTTA------------TGTGTGTGTGTGTGTGTT----------  261
        | |||| |            |||||||||||||||| |          
seq2  ACAGTTTTCAATCTCAGAAGGTTGTGTGTGTGTGTGTG-TGTGTGTGTGA  345

seq1  -------------------------------------------------  261
                                                       
seq2  ATGTCTCACAGTTTTCAGTCTCAGAAGATTTTATGTGTGTGTGTGTGTT  394

seq1: chr1_154049276_154050346
seq2: B6Ng01-260P08.g_70_1148

seq1  GAATTCCAAGCCCAGGATTGGCTCAAGGACTACGTAGGGCATTGGTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAGGATTGGCTCAAGGACTACGTAGGGCATTGGTGAAG  50

seq1  GCTAGGAAGCAAAGTTTGATTATGCTTAGGTATTTGGCAAGTCATTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAAGCAAAGTTTGATTATGCTTAGGTATTTGGCAAGTCATTGCTT  100

seq1  TGAGGCACCTATAACAAAACAATACTGAGAGGAAGCACACAGATCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCACCTATAACAAAACAATACTGAGAGGAAGCACACAGATCCATTC  150

seq1  GCAAGGACAAGTTTGGAGCATTTGTTATATGGGATGCCACAGTTCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACAAGTTTGGAGCATTTGTTATATGGGATGCCACAGTTCCAGGA  200

seq1  GACTAAGTTTCCGTGAACATTTCGCCTCGGGAATGTGTTCAGGTTTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGTTTCCGTGAACATTTCGCCTCGGGAATGTGTTCAGGTTTCTAG  250

seq1  TCCTGCCACGCGTGTCACTACTAGACTTGATGTATCACTCTATGATCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCACGCGTGTCACTACTAGACTTGATGTATCACTCTATGATCACA  300

seq1  GAAGGAACGGAAGAGAGAAGGCAAAGACCCATCCTTCCTTTGAAATCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACGGAAGAGAGAAGGCAAAGACCCATCCTTCCTTTGAAATCTGG  350

seq1  CTGCATTTATTCTCTGTGGGTCAGAAGTGGGAAAGGGCTTGCAGCCTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTATTCTCTGTGGGTCAGAAGTGGGAAAGGGCTTGCAGCCTCAC  400

seq1  TTTCATGATCCCAAGAATTTTGAGAGGGGTAGAAAGATTGGGAAAGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGATCCCAAGAATTTTGAGAGGGGTAGAAAGATTGGGAAAGGGAA  450

seq1  GAAGAGAAAGTACACATATGTATTTTAATATACACCTACAAACACACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAGTACACATATGTATTTTAATATACACCTACAAACACACATA  500

seq1  CATATATACACAAATTCACACACACACAATACATACTTATACACACTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATACACAAATTCACACACACACAATACATACTTATACACACTTAT  550

seq1  ATGTGTATCCATAAACATATATATATATATACATATATGTGCATGTATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATCCATAAACATATATATATATATACATATATGTGCATGTATAC  600

seq1  ACATGCACATACATATACACAAATATACATACCATATATACATATACACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACATACATATACACAAATATACATACCATATATACATATACACC  650

seq1  CATACCATATATACATATACAAATATGTATGAATGTATACATATACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCATATATACATATACAAATATGTATGAATGTATACATATACATAA  700

seq1  ATACACACATATATAAATATATAAACACACATACATATATGTGTGTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACATATATAAATATATAAACACACATACATATATGTGTGTGTAT  750

seq1  ATTCCTCAAGACAGAGGGATATTTTTGCTACCGTACACCAACCTGTGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCAAGACAGAGGGATATTTTTGCTACCGTACACCAACCTGTGAGA  800

seq1  GAC-TTTTCCTTTCTTACTCTTGAAGCTGACTTTCCTCAGTCTGCCTCTT  849
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACTTTTTCCTTTCTTACTCTGGAAGCTGACTTTCCTCAGTCTGCCTCTT  850

seq1  TCCCTGTCTGAGGAT-GGTGAAATAGCTTCACATTTCCCCTCAATGCATT  898
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCCTGTCTGAGGATGGGTGAAATAGCTTCACATTTCCCCTCAATGCATT  900

seq1  CTGTTCACAGAACAGCAGTTCACAAC-TAAGACTCTAGGCCAGTCAACCG  947
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGTTCACAGAACAGCAGTTCACAACTTAAGACTCTAGGCCAGTCAACCG  950

seq1  TGACTTAGGCTTGCTTCCCTTGAATCTGCTTCTGCTGGGAATAAACT-AG  996
      ||||||||||||||||||| || ||||||||||||| |||||||||| ||
seq2  TGACTTAGGCTTGCTTCCC-TGGATCTGCTTCTGCT-GGAATAAACTAAG  998

seq1  GGTTT-GCTTTTTCTGTTT-CTCATTACAGTTGTCCAT-GGAGT-CAATG  1042
      ||||| ||||||||||||| |||||||||| ||||||| ||||| |||||
seq2  GGTTTGGCTTTTTCTGTTTCCTCATTACAGATGTCCATGGGAGTCCAATG  1048

seq1  C-CATAACCTTT-GCAAACCAGTCTTTGCAG  1071
      | | |||||||| |||| | |||||||||||
seq2  CACGTAACCTTTGGCAACCAAGTCTTTGCAG  1079