BAC Information

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BAC

Clone NameB6Ng01-261E06
ChromosomeX (Build37)
Map Location 152,014,566 - 152,015,699
singlet/doubletsinglet
Overlap genePtchd1
Upstream geneLOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394
Downstream gene4930503H13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261E06.bB6Ng01-261E06.g
ACCGA065979GA065980
length1,1421,211
definitionB6Ng01-261E06.b B6Ng01-261E06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactagcaaatagttgagagttaactctaaccagtagaaatgctt
ctagaaatctgctcataaagtgactcatgttttaaagttatttaatgttt
tttttttttttttaatgagaccttctgggagatttgattttgcttgcttg
ctgtgttaatgactaatcataggaatcgatctactctgtacttctgcaat
tttgtgtttaggtttttcttggtcctatatttccttatcttccccaaagc
tcacagacacagcatggaaactgctgcctttggatgctccttaggctttt
tcaggttttaatgcctttcctactagcagggatgtcctcagctttggatc
cacgaggaattgttgagaaaagttacaataagagggcttactggtagatc
atctttaagtttcagtatgaaaatgtgtaatgtcaagagaaagtgaagtc
acctataatgcacctgtaacaaattccatatatggaaacaaacaagcata
ttcatctaaaaatgccatagattacaaactacttaaaatatactttactc
ttaggcaagtttcatgatattgcccatgtttataaaatacttttcttcga
tagcatctgcataaatttatgatgtttcttgtaccaagaaagaaatttca
agaatagatatttctggattaagtaacgtctattatttagaaaagagttc
attaatggggttacatttaaactttgtcagttataaacatttacttagaa
atatgaaatgtttggtttatccttgcctgttgtgtctcacagttaagagt
aaaagtgtactctacttaagtaaagacagatgcttatatctgggaaggat
atatgcatctttttctttctactagaggcttttcatatattaaataatat
acatattccaataacacatagggtttgaaactgagaaaatagttttcctt
tgctagacaattgcatttgaaagttccagtaaattatttttgcttaatag
agttttatttaaaagaataattatgttatatgtaagtattattagaattg
tttttatataatgcaaacctagtataatatggttgtgccatacatatata
atattatatctaattccataggtaaatgctatgcattggtaa
gaattcttagacaaatggatggatatggaggatatcttcctgagtgaggt
aacccaatcacaaaagaacacctatgatatgcacttactgataagtagat
attagcccagaagctcagaattctttttatctctgtcccttagagaaata
taggaaaacacaatcaaaaaggtgaagaatagaacaaaactgtccaaaac
ctaaaaatggaactagaaacaataaagaaaatacaaagggagttatcctt
ggaaatggaaaacctaagaaagagaccaggagttataaatgcaagcaaac
aaacagcttctgggacaggccccattttgggccctcatcttcatccagaa
agtagatctaagctccagacacctgtgctccttccccatcagaggagagg
tggcctgcagggagtactctgaccactgagattcaagagagagttggact
cccaggagtgcggacagaggcttacagaatcaaagggggaacaagctcca
gccagagacagctataacaactaacaccagagattaccagatggcgaaag
gcaaatgtaagaatcttactaacagaaaccaagaccgctcaccatcatca
gaacccagcactctcacttcagcaagtcctggatacccaaaaacaactga
aaagcaagattcagattaaaattgtatctcgtgatgctggtagaggagtt
taagaaggaaattaataactcacttaaagaaatacaggagaacatcgcta
aacaggtagaaggccttaaagaggaagcagaaaaaaatcccttaaagaat
tacaggaaaacacaatcaaacaggtgatggaattgaacagaaccgtccaa
gatctaaacagggaagaagaaacaataaagaaaacccaagtgagaaaact
ctgagatagaaaccctagaaaagaaatcaggaaccattagacgtgagcat
cagcaacagaattcaagagatgggaagagaaaattctcagttgcagaaga
ttcccatagaagaccattggatacaaccattcaaatggaaatgccaaaat
gccaaaagaatcttaacttcataccttacagggaaatccaggaaccatta
gagactaaccctacagatatagagtgaatgagaatgtagattttcactga
acgcagcaatgttctcaacaaacttatgatagaaaactttctcgataccc
tctatgggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_152014566_152015699
seq2: B6Ng01-261E06.b_45_1186

seq1  GAATTCACTAGCAAATAGTTGAGAGTTAACTCTAACCAGTAGAAATGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGCAAATAGTTGAGAGTTAACTCTAACCAGTAGAAATGCTT  50

seq1  CTAGAAATCTGCTCATAAAGTGACTCATGTTTTAAAGTTATTTAATGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATCTGCTCATAAAGTGACTCATGTTTTAAAGTTATTTAATGTTT  100

seq1  TTTTTTTTTTTTTAATGAGACCTTCTGGGAGATTTGATTTTGCTTGCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTAATGAGACCTTCTGGGAGATTTGATTTTGCTTGCTTG  150

seq1  CTGTGTTAATGACTAATCATAGGAATCGATCTACTCTGTACTTCTGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTAATGACTAATCATAGGAATCGATCTACTCTGTACTTCTGCAAT  200

seq1  TTTGTGTTTAGGTTTTTCTTGGTCCTATATTTCCTTATCTTCCCCAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTAGGTTTTTCTTGGTCCTATATTTCCTTATCTTCCCCAAAGC  250

seq1  TCACAGACACAGCATGGAAACTGCTGCCTTTGGATGCTCCTTAGGCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACACAGCATGGAAACTGCTGCCTTTGGATGCTCCTTAGGCTTTT  300

seq1  TCAGGTTTTAATGCCTTTCCTACTAGCAGGGATGTCCTCAGCTTTGGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTTAATGCCTTTCCTACTAGCAGGGATGTCCTCAGCTTTGGATC  350

seq1  CACGAGGAATTGTTGAGAAAAGTTACAATAAGAGGGCTTACTGGTAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGAATTGTTGAGAAAAGTTACAATAAGAGGGCTTACTGGTAGATC  400

seq1  ATCTTTAAGTTTCAGTATGAAAATGTGTAATGTCAAGAGAAAGTGAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAGTTTCAGTATGAAAATGTGTAATGTCAAGAGAAAGTGAAGTC  450

seq1  ACCTATAATGCACCTGTAACAAATTCCATATATGGAAACAAACAAGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAATGCACCTGTAACAAATTCCATATATGGAAACAAACAAGCATA  500

seq1  TTCATCTAAAAATGCCATAGATTACAAACTACTTAAAATATACTTTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTAAAAATGCCATAGATTACAAACTACTTAAAATATACTTTACTC  550

seq1  TTAGGCAAGTTTCATGATATTGCCCATGTTTATAAAATACTTTTCTTCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAAGTTTCATGATATTGCCCATGTTTATAAAATACTTTTCTTCGA  600

seq1  TAGCATCTGCATAAATTTATGATGTTTCTTGTACCAAGAAAGAAATTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTGCATAAATTTATGATGTTTCTTGTACCAAGAAAGAAATTTCA  650

seq1  AGAATAGATATTTCTGGATTAAGTAACGTCTATTATTTAGAAAAGAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGATATTTCTGGATTAAGTAACGTCTATTATTTAGAAAAGAGTTC  700

seq1  ATTAATGGGGTTACATTTAAACTTTGTCAGTTATAAACATTTACTTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGGGGTTACATTTAAACTTTGTCAGTTATAAACATTTACTTAGAA  750

seq1  ATATGAAATGTTTGGTTTATCCTTGCCTGTTGTGTCTCACAGTTAAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAATGTTTGGTTTATCCTTGCCTGTTGTGTCTCACAGTTAAGAGT  800

seq1  AAAAGTGTACTCTACTTAAGTAAAGACAGATGCTTATATCTGGGAAGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTACTCTACTTAAGTAAAGACAGATGCTTATATCTGGGAAGGAT  850

seq1  ATATGCATCTTTTTCTTTCTACTAGAGGCTTTTCATATATTAAATAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATCTTTTTCTTTCTACTAGAGGCTTTTCATATATTAAATAATAT  900

seq1  ACATATTCCAATAACAACATAGGGTTTGAAACTGAG-AAATAGTTTTCCT  949
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  ACATATTCCAATAAC-ACATAGGGTTTGAAACTGAGAAAATAGTTTTCCT  949

seq1  TTGCTAGACAATTGCATTTGAAAGTT-CAGTAAATTA-TTTTGC-TAATA  996
      |||||||||||||||||||||||||| |||||||||| |||||| |||||
seq2  TTGCTAGACAATTGCATTTGAAAGTTCCAGTAAATTATTTTTGCTTAATA  999

seq1  GAGTTTTATTTAAA--GATATTTATGTTTTATATGTAAGTA-TATTAGAA  1043
      ||||||||||||||   ||| |||||  ||||||||||||| ||||||||
seq2  GAGTTTTATTTAAAAGAATAATTATG--TTATATGTAAGTATTATTAGAA  1047

seq1  ---TGTTTATAT-ATGCAAAACTAGTAT-ATATGTGTGTG-CATATATAT  1087
         | ||||||| ||||||| ||||||| |||||  |||| |||| ||||
seq2  TTGTTTTTATATAATGCAAACCTAGTATAATATGGTTGTGCCATACATAT  1097

seq1  ATACATATATATATAT-ATTCCATA-GTATATGCTATGTCATTGTGTAA  1134
      ||| |||| ||||| | |||||||| ||| |||||||| ||||| ||||
seq2  ATA-ATAT-TATATCTAATTCCATAGGTAAATGCTATG-CATTG-GTAA  1142