BAC Information

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BAC

Clone NameB6Ng01-261N02
ChromosomeX (Build37)
Map Location 91,503,878 - 91,624,003
singlet/doubletdoublet
Overlap geneKlhl15, LOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik
Upstream geneArx, Pola1, EG629581, Pcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x
Downstream geneEG668148, Maged1, LOC668150, EG385499, EG668156, Gspt2, LOC385500, Zxdb, LOC631331, EG631319, Zxda, Gm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189, 2810002O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261N02.bB6Ng01-261N02.g
ACCGA066393GA066394
length8161,181
definitionB6Ng01-261N02.b B6Ng01-261N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,503,878 - 91,504,693)(91,622,813 - 91,624,003)
sequence
gaattctaaagtgctagcatgaacaacagcaacaacaacaacgaaaacta
agaaattcataatcctgaaagacaatatcctgaaagactataaggtatga
aagcacattttttttttactatataattaaatctaacaatttcagaatct
tctttttaatttaaattttgtgatgctgggtgggggttggacctaggtct
tcacataagaagcactcgactattgaggtatattccaagttagatcttgt
ctttttaaaacatagttgtttaaatcatgatttgtttttgtctgtttcag
atattttttttatagaaaaccctaaaaatttattatatcttcttttttaa
aaaatatttttattaggtattttcctcatttacatttccaattgaaacta
aactgtaatttcagtttttacttaagcatatatctttggcatgtattttt
tactagctttgatgacctttgcatccattaacaaaaagataaggcctgtt
atcacaatgaatttcagtaaagatttatatgttaacaaagataaggcctg
ttatcacagtgcatttcagtaaagatttgctttaattttgttttgtgaca
gggtctcatttagtagcccaggtttggctggaactcactatatagcctag
gctagacttggacttgagtcagtcctcccaccttagctttctaagtgtta
ccattacaattgtgacccactctactttgctggctttttgttgttgtttt
ctttttctcttttcttttctttcctttccttttttctcttctcttctctt
ctcttctcttctcttc
gaattcttgagtacaaggtcagctataagctatagagtgagatcaaggcc
agcctaggcctcatagccaggccctgtctcaaacaaaatccaaaaagact
caggcaatctatggactaattcttcagctcaggccacaagagtggagtcc
tgggagttagccaagataataaccctggcaaggtcataaaaacacgcaga
tcacagaaactaaactgtccttgcggctctgcacattaaagagtactgcc
cagaattctgcagcttcggaaccacacactttcccagtaaaattgcttta
aaaacaaacggaaaattcaagttaaagtgcttccaaatccccaagtccct
gacaactcgccttctaactccatggagtgagtatccagcaggtaatctct
tctgtttttaaagtagaaggcctatactggctggttttatgtcaacttga
cacagcctacagtcatttgagaaatgggaccctcaactaagaaaatgtct
ccataaaatcaggctgcagataagcttacagggcattttcttaattggtg
attattgtgggagggcccagcctattgtgggtagtaccacccctgggctc
tataagaaagcacagagtaagctatggagagcaagccagtaagcagcact
cctccatagcctctgtatcagctcctgcctccaggttcctgccctgtttg
agttcctgtcctgacttcttcaatgatgaacagtgatgtggcctaacaaa
tcaatcctcccccataacaataataaccctaagacaagaccttttattta
ttcttccagaagtagctacctttcatcttactagactttccatttaaatg
atgtagctctttcctttccaataaaagaccttttgcgtgcctagaaacac
aagagggttcagaatcaccagagaactgttttaaaagcatacattccagc
accttctcctaaagagtctgacttggtaaatctaagaaacccaagaactt
attctaccctcagcaagtttcaaaatcactattccacagatgtttaggga
cagatactgaacatagctagtatggatagtcgagttcacttatttttaga
acatcttaagaaccttgattgaaattgtcaaagtaaacagcagcatgact
tatttatacctcagaattaggccctcactta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_91503878_91504693
seq2: B6Ng01-261N02.b_48_863

seq1  GAATTCTAAAGTGCTAGCATGAACAACAGCAACAACAACAACGAAAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGTGCTAGCATGAACAACAGCAACAACAACAACGAAAACTA  50

seq1  AGAAATTCATAATCCTGAAAGACAATATCCTGAAAGACTATAAGGTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCATAATCCTGAAAGACAATATCCTGAAAGACTATAAGGTATGA  100

seq1  AAGCACATTTTTTTTTTACTATATAATTAAATCTAACAATTTCAGAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATTTTTTTTTTACTATATAATTAAATCTAACAATTTCAGAATCT  150

seq1  TCTTTTTAATTTAAATTTTGTGATGCTGGGTGGGGGTTGGACCTAGGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAATTTAAATTTTGTGATGCTGGGTGGGGGTTGGACCTAGGTCT  200

seq1  TCACATAAGAAGCACTCGACTATTGAGGTATATTCCAAGTTAGATCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAGAAGCACTCGACTATTGAGGTATATTCCAAGTTAGATCTTGT  250

seq1  CTTTTTAAAACATAGTTGTTTAAATCATGATTTGTTTTTGTCTGTTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAACATAGTTGTTTAAATCATGATTTGTTTTTGTCTGTTTCAG  300

seq1  ATATTTTTTTTATAGAAAACCCTAAAAATTTATTATATCTTCTTTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTTTATAGAAAACCCTAAAAATTTATTATATCTTCTTTTTTAA  350

seq1  AAAATATTTTTATTAGGTATTTTCCTCATTTACATTTCCAATTGAAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTTATTAGGTATTTTCCTCATTTACATTTCCAATTGAAACTA  400

seq1  AACTGTAATTTCAGTTTTTACTTAAGCATATATCTTTGGCATGTATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAATTTCAGTTTTTACTTAAGCATATATCTTTGGCATGTATTTTT  450

seq1  TACTAGCTTTGATGACCTTTGCATCCATTAACAAAAAGATAAGGCCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCTTTGATGACCTTTGCATCCATTAACAAAAAGATAAGGCCTGTT  500

seq1  ATCACAATGAATTTCAGTAAAGATTTATATGTTAACAAAGATAAGGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATGAATTTCAGTAAAGATTTATATGTTAACAAAGATAAGGCCTG  550

seq1  TTATCACAGTGCATTTCAGTAAAGATTTGCTTTAATTTTGTTTTGTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAGTGCATTTCAGTAAAGATTTGCTTTAATTTTGTTTTGTGACA  600

seq1  GGGTCTCATTTAGTAGCCCAGGTTTGGCTGGAACTCACTATATAGCCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCATTTAGTAGCCCAGGTTTGGCTGGAACTCACTATATAGCCTAG  650

seq1  GCTAGACTTGGACTTGAGTCAGTCCTCCCACCTTAGCTTTCTAAGTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACTTGGACTTGAGTCAGTCCTCCCACCTTAGCTTTCTAAGTGTTA  700

seq1  CCATTACAATTGTGACCCACTCTACTTTGCTGGCTTTTTGTTGTTGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACAATTGTGACCCACTCTACTTTGCTGGCTTTTTGTTGTTGTTTT  750

seq1  CTTTTTCTCTTTTCTTTTCTTTCCTTTCCTTTTTTCTCTTCTCTTCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTCTTTTCTTTTCTTTCCTTTCCTTTTTTCTCTTCTCTTCTCTT  800

seq1  CTCTTCTCTTCTCTTC  816
      ||||||||||||||||
seq2  CTCTTCTCTTCTCTTC  816

seq1: chrX_91622813_91624003
seq2: B6Ng01-261N02.g_68_1248 (reverse)

seq1  TAAGTGAGG--CT-ATTCTGGAGTATAAATTAGTCATGCTGCTGTTTATT  47
      |||||||||  || ||||||  |||||||| ||||||||||||||||| |
seq2  TAAGTGAGGGCCTAATTCTGAGGTATAAATAAGTCATGCTGCTGTTTACT  50

seq1  TTTTTGAACAATTTTCATTCCAGTGTCTTTAAGATGTTCTTAAAAATAAG  97
      ||     |||| ||||| || || ||  ||||||||||| ||||||||||
seq2  TT----GACAA-TTTCAATCAAG-GTTCTTAAGATGTTC-TAAAAATAAG  93

seq1  TGAACTCGACTATTCATACTAGCTTATGTTCAGTATCTGTTCCCTAAACA  147
      ||||||||||||| ||||||||| ||||||||||||||| ||||||||||
seq2  TGAACTCGACTATCCATACTAGC-TATGTTCAGTATCTG-TCCCTAAACA  141

seq1  TCTTGTGGAATAGTGATTTTTGAAACTTGGCTGAGGGTAGAATAAGTTCT  197
      || ||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TC-TGTGGAATAGTGA-TTTTGAAACTT-GCTGAGGGTAGAATAAGTTCT  188

seq1  TGGGTTTCTTTAGATTTACCAAGTCAGACTCTTTAGGAGAAGGTGCTGGA  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTC-TTAGATTTACCAAGTCAGACTCTTTAGGAGAAGGTGCTGGA  237

seq1  ATGTATGCTTTTAAAACAGTTCTCTGGTGATTCTGAACCCTCTTGTGTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCTTTTAAAACAGTTCTCTGGTGATTCTGAACCCTCTTGTGTTT  287

seq1  CTAGGCACGCAAAAGGTCTTTTATTGGAAAGGAAAGAGCTACATCATTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCACGCAAAAGGTCTTTTATTGGAAAGGAAAGAGCTACATCATTTA  337

seq1  AATGGAAAGTCTAGTAAGATGAAAGGTAGCTACTTCTGGAAGAATAAATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAGTCTAGTAAGATGAAAGGTAGCTACTTCTGGAAGAATAAATA  387

seq1  AAAGGTCTTGTCTTAGGGTTATTATTGTTATGGGGGAGGATTGATTTGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCTTGTCTTAGGGTTATTATTGTTATGGGGGAGGATTGATTTGTT  437

seq1  AGGCCACATCACTGTTCATCATTGAAGAAGTCAGGACAGGAACTCAAACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACATCACTGTTCATCATTGAAGAAGTCAGGACAGGAACTCAAACA  487

seq1  GGGCAGGAACCTGGAGGCAGGAGCTGATACAGAGGCTATGGAGGAGTGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAACCTGGAGGCAGGAGCTGATACAGAGGCTATGGAGGAGTGCT  537

seq1  GCTTACTGGCTTGCTCTCCATAGCTTACTCTGTGCTTTCTTATAGAGCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTGGCTTGCTCTCCATAGCTTACTCTGTGCTTTCTTATAGAGCCC  587

seq1  AGGGGTGGTACTACCCACAATAGGCTGGGCCCTCCCACAATAATCACCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGTACTACCCACAATAGGCTGGGCCCTCCCACAATAATCACCAA  637

seq1  TTAAGAAAATGCCCTGTAAGCTTATCTGCAGCCTGATTTTATGGAGACAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAATGCCCTGTAAGCTTATCTGCAGCCTGATTTTATGGAGACAT  687

seq1  TTTCTTAGTTGAGGGTCCCATTTCTCAAATGACTGTAGGCTGTGTCAAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGTTGAGGGTCCCATTTCTCAAATGACTGTAGGCTGTGTCAAGT  737

seq1  TGACATAAAACCAGCCAGTATAGGCCTTCTACTTTAAAAACAGAAGAGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAAAACCAGCCAGTATAGGCCTTCTACTTTAAAAACAGAAGAGAT  787

seq1  TACCTGCTGGATACTCACTCCATGGAGTTAGAAGGCGAGTTGTCAGGGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCTGGATACTCACTCCATGGAGTTAGAAGGCGAGTTGTCAGGGAC  837

seq1  TTGGGGATTTGGAAGCACTTTAACTTGAATTTTCCGTTTGTTTTTAAAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATTTGGAAGCACTTTAACTTGAATTTTCCGTTTGTTTTTAAAGC  887

seq1  AATTTTACTGGGAAAGTGTGTGGTTCCGAAGCTGCAGAATTCTGGGCAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACTGGGAAAGTGTGTGGTTCCGAAGCTGCAGAATTCTGGGCAGT  937

seq1  ACTCTTTAATGTGCAGAGCCGCAAGGACAGTTTAGTTTCTGTGATCTGCG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTAATGTGCAGAGCCGCAAGGACAGTTTAGTTTCTGTGATCTGCG  987

seq1  TGTTTTTATGACCTTGCCAGGGTTATTATCTTGGCTAACTCCCAGGACTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATGACCTTGCCAGGGTTATTATCTTGGCTAACTCCCAGGACTC  1037

seq1  CACTCTTGTGGCCTGAGCTGAAGAATTAGTCCATAGATTGCCTGAGTCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGTGGCCTGAGCTGAAGAATTAGTCCATAGATTGCCTGAGTCTT  1087

seq1  TTTGGATTTTGTTTGAGACAGGGCCTGGCTATGAGGCCTAGGCTGGCCTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATTTTGTTTGAGACAGGGCCTGGCTATGAGGCCTAGGCTGGCCTT  1137

seq1  GATCTCACTCTATAGCTTATAGCTGACCTTGTACTCAAGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCACTCTATAGCTTATAGCTGACCTTGTACTCAAGAATTC  1181