BAC Information

Click to search

BAC

Clone NameB6Ng01-262J15
ChromosomeX (Build37)
Map Location 155,193,052 - 155,325,681
singlet/doubletdoublet
Overlap geneLOC436243
Upstream geneKlhl34, Cnksr2, EG667483, LOC671033, LOC667487
Downstream geneLOC100040371, Rps6ka3, Eif1ay, Mtap7d2, A830080D01Rik, LOC100041359, Sh3kbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262J15.bB6Ng01-262J15.g
ACCGA066975GA066976
length1,090636
definitionB6Ng01-262J15.b B6Ng01-262J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,324,669 - 155,325,681)(155,193,052 - 155,193,687)
sequence
gaattcattgggtcttaacaattttaaaaaccctaggtccactagggtca
tcttctctgaataccaacaaatgtcaatctcatctcaaagaagcatgaaa
gccccatccaaatgttcaattgttgtttgtgaagcattcatgttctattt
ggttgcataatctggtatctatctggttctaaagttacctgaacactgaa
gcatctatttgcttaagcatggttttaggataatgcaggtagcatggtcc
tatgcagcaaaacagtattatggtttggacaaaatttatttcatatgttg
ggacctgtagagttttgaaagagaatgctctccacatgtccatagagagt
gacacaattaggagttgtggctttggaatcggtatgtttttgttggagga
ggtgtacaactaaggaatgtactttgaggtgtctgaagtgcaagccagtt
cactgtctgctggctatggattgagacgtagaactctccactcctctagc
atcatgtctgccctcacccaaccgtacttcctgccatgatgattatggac
taaatctctgaaaatgtaaagtgtaaatgaaagtgtaacatctataaagc
tgtgaagagacagcacaaccaaggcaaacattataaaagaaaacatttaa
ttgggactggcttacagtttcagcggtttagtacattaccatcttggctg
gacgcatggcagcctacaggcagacatagttctgaagaaggaggtaagag
ttgctgttttgtcccattgacagtgtcctttgccttacagaagcttttca
atttttttttttttaaagatttatttatttattatatgtaaagtacactg
tagctgtcttcagacactccagaagagggagtcagatctcgttacagatg
gttgtgagccaccatgtggttgctgggatttgaactcctgacctttcaga
agagcagtcgggtgctcttacccactgagccatctcaccagccccagctt
ttcaattttatgaggtcccatttgtctattctgatttagagcatagccat
tggtgttcctgtcaggaaatttttctctatgccatgtgtt

gaattcataggaagccataacataaagttcaagatttggctttagtgagt
caaataggcaaaataataacagaagaaaggaaaaccaagcccacacagag
caggatacttgaaaacttcagtgtctgttgagatttattacccaaagatg
agcttgtggaaagagaaggaagcaatctcttcttggaaataaatttcaag
acctattgtcaacgaaaataaatcacaaatagaaaaaccctctctgggga
aagtcaagaaaacatctcctaggaacatgatcacttcatcagtgacaatg
ctctaccttcaaggaagctgagagaagaaaccttatgtacactcaaaatt
agaggctagatttaaatgtcaataaaaattgtttcatgtgacagggaact
gctgctccaaatgcatcgtgtaaatttattactaacaaaagaagatatat
gaagccgggcatggtggcgcatgcctttaaccccagcactcaggaggcag
agccaggcggatttctgagttcgaggccaacctggtctacaaagtgagtt
ccaggacagccagggctatacagagaaatcctgtcttgaaaatccaaagg
aaaacaagaaggaggaggaggaggggaagggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_155324669_155325681
seq2: B6Ng01-262J15.b_124_1135 (reverse)

seq1  AACACATGGGCATAGAGAAAAATTTCCTGAACAGAACACCAATGGCTTAT  50
      ||||||| ||||||||||||||||||||||   ||||||||||||| |||
seq2  AACACAT-GGCATAGAGAAAAATTTCCTGACAGGAACACCAATGGC-TAT  48

seq1  GCTCTAAAATCAAGAATAGACAAATGGGACCTCATAAAATTGAAAAGCTG  100
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTCT-AAATC-AGAATAGACAAATGGGACCTCATAAAATTGAAAAGCTG  96

seq1  GGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCTG-A  149
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCTGAA  146

seq1  AGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTG  196

seq1  TAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGT  246

seq1  AC-TTACATATAATAAATAAATAAATCTTT-AAAAAAAAAAAATTGAAAA  297
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAATTGAAAA  296

seq1  GCTTCTGTAAGGCAAAGGACACTGTCAATGGGACAAAACAGCAACTCTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTAAGGCAAAGGACACTGTCAATGGGACAAAACAGCAACTCTTA  346

seq1  CCTCCTTCTTCAGAACTATGTCTGCCTGTAGGCTGCCATGCGTCCAGCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCTTCAGAACTATGTCTGCCTGTAGGCTGCCATGCGTCCAGCCA  396

seq1  AGATGGTAATGTACTAAACCGCTGAAACTGTAAGCCAGTCCCAATTAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTAATGTACTAAACCGCTGAAACTGTAAGCCAGTCCCAATTAAAT  446

seq1  GTTTTCTTTTATAATGTTTGCCTTGGTTGTGCTGTCTCTTCACAGCTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTTATAATGTTTGCCTTGGTTGTGCTGTCTCTTCACAGCTTTA  496

seq1  TAGATGTTACACTTTCATTTACACTTTACATTTTCAGAGATTTAGTCCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTTACACTTTCATTTACACTTTACATTTTCAGAGATTTAGTCCAT  546

seq1  AATCATCATGGCAGGAAGTACGGTTGGGTGAGGGCAGACATGATGCTAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCATGGCAGGAAGTACGGTTGGGTGAGGGCAGACATGATGCTAGA  596

seq1  GGAGTGGAGAGTTCTACGTCTCAATCCATAGCCAGCAGACAGTGAACTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGAGAGTTCTACGTCTCAATCCATAGCCAGCAGACAGTGAACTGG  646

seq1  CTTGCACTTCAGACACCTCAAAGTACATTCCTTAGTTGTACACCTCCTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTTCAGACACCTCAAAGTACATTCCTTAGTTGTACACCTCCTCC  696

seq1  AACAAAAACATACCGATTCCAAAGCCACAACTCCTAATTGTGTCACTCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACATACCGATTCCAAAGCCACAACTCCTAATTGTGTCACTCTC  746

seq1  TATGGACATGTGGAGAGCATTCTCTTTCAAAACTCTACAGGTCCCAACAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACATGTGGAGAGCATTCTCTTTCAAAACTCTACAGGTCCCAACAT  796

seq1  ATGAAATAAATTTTGTCCAAACCATAATACTGTTTTGCTGCATAGGACCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAAATTTTGTCCAAACCATAATACTGTTTTGCTGCATAGGACCA  846

seq1  TGCTACCTGCATTATCCTAAAACCATGCTTAAGCAAATAGATGCTTCAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCTGCATTATCCTAAAACCATGCTTAAGCAAATAGATGCTTCAGT  896

seq1  GTTCAGGTAACTTTAGAACCAGATAGATACCAGATTATGCAACCAAATAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGTAACTTTAGAACCAGATAGATACCAGATTATGCAACCAAATAG  946

seq1  AACATGAATGCTTCACAAACAACAATTGAACATTTGGATGGGGCTTTCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAATGCTTCACAAACAACAATTGAACATTTGGATGGGGCTTTCAT  996

seq1  GCTTCTTTGAGATGAG  1013
      ||||||||||||||||
seq2  GCTTCTTTGAGATGAG  1012


seq1: chrX_155193052_155193687
seq2: B6Ng01-262J15.g_65_700

seq1  GAATTCATAGGAAGCCATAACATAAAGTTCAAGATTTGGCTTTAGTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGAAGCCATAACATAAAGTTCAAGATTTGGCTTTAGTGAGT  50

seq1  CAAATAGGCAAAATAATAACAGAAGAAAGGAAAACCAAGCCCACACAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGGCAAAATAATAACAGAAGAAAGGAAAACCAAGCCCACACAGAG  100

seq1  CAGGATACTTGAAAACTTCAGTGTCTGTTGAGATTTATTACCCAAAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATACTTGAAAACTTCAGTGTCTGTTGAGATTTATTACCCAAAGATG  150

seq1  AGCTTGTGGAAAGAGAAGGAAGCAATCTCTTCTTGGAAATAAATTTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTGGAAAGAGAAGGAAGCAATCTCTTCTTGGAAATAAATTTCAAG  200

seq1  ACCTATTGTCAACGAAAATAAATCACAAATAGAAAAACCCTCTCTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTGTCAACGAAAATAAATCACAAATAGAAAAACCCTCTCTGGGGA  250

seq1  AAGTCAAGAAAACATCTCCTAGGAACATGATCACTTCATCAGTGACAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAGAAAACATCTCCTAGGAACATGATCACTTCATCAGTGACAATG  300

seq1  CTCTACCTTCAAGGAAGCTGAGAGAAGAAACCTTATGTACACTCAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTTCAAGGAAGCTGAGAGAAGAAACCTTATGTACACTCAAAATT  350

seq1  AGAGGCTAGATTTAAATGTCAATAAAAATTGTTTCATGTGACAGGGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTAGATTTAAATGTCAATAAAAATTGTTTCATGTGACAGGGAACT  400

seq1  GCTGCTCCAAATGCATCGTGTAAATTTATTACTAACAAAAGAAGATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCCAAATGCATCGTGTAAATTTATTACTAACAAAAGAAGATATAT  450

seq1  GAAGCCGGGCATGGTGGCGCATGCCTTTAACCCCAGCACTCAGGAGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCGGGCATGGTGGCGCATGCCTTTAACCCCAGCACTCAGGAGGCAG  500

seq1  AGCCAGGCGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAAAGTGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAAAGTGAGTT  550

seq1  CCAGGACAGCCAGGGCTATACAGAGAAATCCTGTCTTGAAAATCCAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGCCAGGGCTATACAGAGAAATCCTGTCTTGAAAATCCAAAGG  600

seq1  AAAACAAGAAGGAGGAGGAGGAGGGGAAGGGGGAGG  636
      ||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGAAGGAGGAGGAGGAGGGGAAGGGGGAGG  636


| Home | SequenceCutter | Blast | Download |