BAC Information

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BAC

Clone NameB6Ng01-262N08
ChromosomeX (Build37)
Map Location 141,842,736 - 141,994,523
singlet/doubletdoublet
Overlap geneAmot
Upstream geneTrpc5, LOC100039436, Zcchc16, LOC666655, LOC623591, Lhfpl1
Downstream geneEG434860, LOC100039313, LOC623697, LOC623731, LOC237096, LOC100039558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262N08.bB6Ng01-262N08.g
ACCGA067148GA067149
length4651,064
definitionB6Ng01-262N08.b B6Ng01-262N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,842,736 - 141,843,206)(141,993,446 - 141,994,523)
sequence
aattcccagcaaccacatgagggctcacaaccctcagcaatgggatctaa
tgccctcttctggtgtgtctgatggcagccacagtgtattcacatacata
aaataaaataaataagatcgttttaaaataattttcctgagctgtgtttg
taagggaagcacacttaaaaaaaaaagcttagcagcaataatatttgagg
caatataataaatttggctccccaaaccaaatctagcactagtgacagta
gcattaaggttacatagagaggcttgggaaaaacataagtcacacgtttt
cattccttgtcttcaattgctggatgcactatagagaataaagtcccacc
accctttccagacactttgtaatttggaagaagatgaaatcctttagctg
gtgagaaatcccaattagagagataagagactcaagctggggaaggaagg
agtggggggatggga

gaattccttgagggcagtgactatgcctcattcatctcgagtgcctcagg
atttttgtgagtgctggatagaaagcaaatgataaagaaaatggcaaaga
attgatttttttgaaatgaataaacttacttatgatgaagtctaaagaac
taagaataagccctctcttgggaatatagtagatgtaagaaaaatactat
tgctataaaaataccataccataatatttgagtagaataatagtgatcat
gatgacacattgctccatactaaatactgtcatcttttcctggtctcttt
ctgtccaatgcattatgactgctgcttttgatttaagaaaaatgtgaacc
ttacctaaaagttgcatttgtaaagaaagtagaaaaacttagtttgctct
caaggactatgctttgctacagttttagaacattcccactcagggcagga
agtgatgtgtgaaaagtaacatgaaaatccaacctggtatggaacgagag
cctgtctaccttccaggcttgtgataggcaaattcataccttggctgagc
taggtcattcttatgatgtctttagagaaagattcacatttaaaaagttg
tatgattatccaaatcaaacatgttgatgatatttttacacaaaccaagg
caaataaacccaggatataacattttcagctattaaaaatcaaaaacaaa
tcctctgatcattgtggaagtatcaaggacctgccatttattaatctttg
cactcttgctgggcgttgtttagcaaaggaaacttacaaagtgccctcta
tcccatttacaagtctcaatccctgtgtgagcctgtattgaaaacatgtg
gtgagggatgggtaatgtgccagagatggtggtgttgcacatcacatgtt
aataaaactgctgttggaactttgttgttttatcaaagagctaatgacta
cctacttcatttgtgtcagcagggaaccagcaagagtcagagtcaacagt
caggaatcacacaattttagtaaggtctattctaggccaaaaacagctgt
actgtaattcaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_141842736_141843206
seq2: B6Ng01-262N08.b_46_516

seq1  GAATTCAATTCCCAGCAACCACATGAGGGCTCACAACCCTCAGCAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCAACCACATGAGGGCTCACAACCCTCAGCAATGGG  50

seq1  ATCTAATGCCCTCTTCTGGTGTGTCTGATGGCAGCCACAGTGTATTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATGCCCTCTTCTGGTGTGTCTGATGGCAGCCACAGTGTATTCACA  100

seq1  TACATAAAATAAAATAAATAAGATCGTTTTAAAATAATTTTCCTGAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAATAAAATAAATAAGATCGTTTTAAAATAATTTTCCTGAGCTG  150

seq1  TGTTTGTAAGGGAAGCACACTTAAAAAAAAAAGCTTAGCAGCAATAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAAGGGAAGCACACTTAAAAAAAAAAGCTTAGCAGCAATAATAT  200

seq1  TTGAGGCAATATAATAAATTTGGCTCCCCAAACCAAATCTAGCACTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCAATATAATAAATTTGGCTCCCCAAACCAAATCTAGCACTAGTG  250

seq1  ACAGTAGCATTAAGGTTACATAGAGAGGCTTGGGAAAAACATAAGTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGCATTAAGGTTACATAGAGAGGCTTGGGAAAAACATAAGTCACA  300

seq1  CGTTTTCATTCCTTGTCTTCAATTGCTGGATGCACTATAGAGAATAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTCATTCCTTGTCTTCAATTGCTGGATGCACTATAGAGAATAAAGT  350

seq1  CCCACCACCCTTTCCAGACACTTTGTAATTTGGAAGAAGATGAAATCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACCCTTTCCAGACACTTTGTAATTTGGAAGAAGATGAAATCCTT  400

seq1  TAGCTGGTGAGAAATCCCAATTAGAGAGATAAGAGACTCAAGCTGGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGTGAGAAATCCCAATTAGAGAGATAAGAGACTCAAGCTGGGGAA  450

seq1  GGAAGGAGTGGGGGGATGGGA  471
      |||||||||||||||||||||
seq2  GGAAGGAGTGGGGGGATGGGA  471


seq1: chrX_141993446_141994523
seq2: B6Ng01-262N08.g_68_1131 (reverse)

seq1  AATTGAAATTACAGTAACAAGCTGGTTTTTTTGCCTAGAATAGACCTTTA  50
      ||||| ||||||||||   |||||  ||||| |||||||||||||| |||
seq2  AATTG-AATTACAGTA--CAGCTG--TTTTTGGCCTAGAATAGACC-TTA  44

seq1  CTAAAATTTGTGTGGTTTCCTGACTGGTTGACTTCTTGACTCCTTGGCTG  100
      |||||| |||||| | ||||||||| |||||||   ||||||  | ||||
seq2  CTAAAA-TTGTGT-GATTCCTGACT-GTTGACT--CTGACTC--TTGCTG  87

seq1  GTTCCCTGCTGACAC-AATGAAGTAGGTTAGTCA-TAGCTCTTTTGATAA  148
      ||||||||||||||| ||||||||||| |||||| |||||| ||||||||
seq2  GTTCCCTGCTGACACAAATGAAGTAGG-TAGTCATTAGCTC-TTTGATAA  135

seq1  AACAACAAAGTTCCAACAGCAGTTTTTATTAACATGTGATGTGCAACACC  198
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AACAACAAAGTTCCAACAGCAG-TTTTATTAACATGTGATGTGCAACACC  184

seq1  ACCATCTCTGGCACATTACCCATCCCTCACCACATGTTTTCAATACAGGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTGGCACATTACCCATCCCTCACCACATGTTTTCAATACAGGC  234

seq1  TCACACAGGGATTGAGACTTGTAAATGGGATAGAGGGCACTTTGTAAGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGGGATTGAGACTTGTAAATGGGATAGAGGGCACTTTGTAAGTT  284

seq1  TCCTTTGCTAAACAACGCCCAGCAAGAGTGCAAAGATTAATAAATGGCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCTAAACAACGCCCAGCAAGAGTGCAAAGATTAATAAATGGCAG  334

seq1  GTCCTTGATACTTCCACAATGATCAGAGGATTTGTTTTTGATTTTTAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGATACTTCCACAATGATCAGAGGATTTGTTTTTGATTTTTAATA  384

seq1  GCTGAAAATGTTATATCCTGGGTTTATTTGCCTTGGTTTGTGTAAAAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAATGTTATATCCTGGGTTTATTTGCCTTGGTTTGTGTAAAAATA  434

seq1  TCATCAACATGTTTGATTTGGATAATCATACAACTTTTTAAATGTGAATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAACATGTTTGATTTGGATAATCATACAACTTTTTAAATGTGAATC  484

seq1  TTTCTCTAAAGACATCATAAGAATGACCTAGCTCAGCCAAGGTATGAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAAAGACATCATAAGAATGACCTAGCTCAGCCAAGGTATGAATT  534

seq1  TGCCTATCACAAGCCTGGAAGGTAGACAGGCTCTCGTTCCATACCAGGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATCACAAGCCTGGAAGGTAGACAGGCTCTCGTTCCATACCAGGTT  584

seq1  GGATTTTCATGTTACTTTTCACACATCACTTCCTGCCCTGAGTGGGAATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCATGTTACTTTTCACACATCACTTCCTGCCCTGAGTGGGAATG  634

seq1  TTCTAAAACTGTAGCAAAGCATAGTCCTTGAGAGCAAACTAAGTTTTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAACTGTAGCAAAGCATAGTCCTTGAGAGCAAACTAAGTTTTTCT  684

seq1  ACTTTCTTTACAAATGCAACTTTTAGGTAAGGTTCACATTTTTCTTAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTACAAATGCAACTTTTAGGTAAGGTTCACATTTTTCTTAAAT  734

seq1  CAAAAGCAGCAGTCATAATGCATTGGACAGAAAGAGACCAGGAAAAGATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAGCAGTCATAATGCATTGGACAGAAAGAGACCAGGAAAAGATG  784

seq1  ACAGTATTTAGTATGGAGCAATGTGTCATCATGATCACTATTATTCTACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTTAGTATGGAGCAATGTGTCATCATGATCACTATTATTCTACT  834

seq1  CAAATATTATGGTATGGTATTTTTATAGCAATAGTATTTTTCTTACATCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTATGGTATGGTATTTTTATAGCAATAGTATTTTTCTTACATCT  884

seq1  ACTATATTCCCAAGAGAGGGCTTATTCTTAGTTCTTTAGACTTCATCATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTCCCAAGAGAGGGCTTATTCTTAGTTCTTTAGACTTCATCATA  934

seq1  AGTAAGTTTATTCATTTCAAAAAAATCAATTCTTTGCCATTTTCTTTATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTTATTCATTTCAAAAAAATCAATTCTTTGCCATTTTCTTTATC  984

seq1  ATTTGCTTTCTATCCAGCACTCACAAAAATCCTGAGGCACTCGAGATGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTTCTATCCAGCACTCACAAAAATCCTGAGGCACTCGAGATGAA  1034

seq1  TGAGGCATAGTCACTGCCCTCAAGGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  TGAGGCATAGTCACTGCCCTCAAGGAATTC  1064


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