MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-264O12
Chromosome	X (Build37)
Map Location	10,777,651 - 10,918,338
singlet/doublet	doublet
Overlap gene	LOC100042922, LOC100042927, LOC100042929, LOC100042931, OTTMUSG00000016790, LOC100042939, LOC100042943, LOC100042944, LOC100042946, EG236663
Upstream gene	Rpgr, Otc, 4933416E14Rik, Tspan7, EG546265, LOC633354, LOC633361, LOC100042912, Mid1ip1, LOC668982, Ppia-psx_105.1
Downstream gene	8430439B09Rik, LOC669520, Rpl23a-ps, LOC100043945, Bcor, 2900008C10Rik, LOC385323, LOC100043946
Link	Open Mouse BAC browser

Click to get alignment info.

name	Rpgr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19893 MGI:1344037
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Otc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18416 MGI:97448
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933416E14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71180 MGI:1918430
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Tspan7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21912 MGI:1298407
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG546265 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546265 MGI:3647036
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 19 mRNAs, 779 ESTs, 6 Proteins

name	LOC633354 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:633354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins

name	LOC633361 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:633361
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 59 Proteins pseudo : _no_value

name	LOC100042912 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042912
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Mid1ip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68041 MGI:1915291
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668982 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668982
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins pseudo : _no_value

name	Ppia-psx_105.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:547156
definition	note : peptidylprolyl isomerase A pseudogene x_105.1 pseudo : _no_value

name	LOC100042922 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042922
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	LOC100042927 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042927
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	LOC100042929 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042929
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	LOC100042931 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042931
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	OTTMUSG00000016790 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:547160 MGI:3649617
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042939 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042939
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	LOC100042943 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	LOC100042944 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042944
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	LOC100042946 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042946
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins

name	EG236663 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236663 MGI:3643273
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	8430439B09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78147 MGI:1925397
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC669520 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669520
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Rpl23a-ps (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628338
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC100043945 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043945
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein pseudo : _no_value

name	Bcor (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71458 MGI:1918708
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	2900008C10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72937 MGI:1920187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 15 ESTs

name	LOC385323 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:385323
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC100043946 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043946
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	Rpgr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755347 GeneID:19893 MGI:1344037
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinitis pigmentosa GTPase regulator transcript_id : NM_011285.1

name	Otc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803523 GeneID:18416 MGI:97448
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ornithine transcarbamylase transcript_id : NM_008769.3

name	Tspan7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84662760 GeneID:21912 MGI:1298407
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetraspanin 7 transcript_id : NM_019634.2

name	EG546265 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407006 GeneID:546265 MGI:3647036
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 19 mRNAs, 779 ESTs, 6 Proteins product : predicted gene, EG546265 transcript_id : XM_620954.3

name	LOC633354 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271039 GeneID:633354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins product : similar to lactate dehydrogenase 1, A chain transcript_id : XM_001481252.1

name	LOC100042912 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270966 GeneID:100042912
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100042912 transcript_id : XM_001476973.1

name	Mid1ip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801493 GeneID:68041 MGI:1915291
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish)) transcript_id : NM_026524.3

name	LOC100042922 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270968 GeneID:100042922
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001476992.1

name	LOC100042927 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270970 GeneID:100042927
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : hypothetical protein LOC100042927 transcript_id : XM_001477006.1

name	LOC100042929 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270972 GeneID:100042929
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001477023.1

name	LOC100042931 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270974 GeneID:100042931
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001477035.1

name	OTTMUSG00000016790 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125347343 GeneID:547160 MGI:3649617
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000016790 transcript_id : NM_001025260.2

name	LOC100042939 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270976 GeneID:100042939
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001477063.1

name	LOC100042943 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270978 GeneID:100042943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001477078.1

name	LOC100042944 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270980 GeneID:100042944
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001477092.1

name	LOC100042946 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270982 GeneID:100042946
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 6 Proteins product : similar to 1700012L04Rik protein transcript_id : XM_001477106.1

name	EG236663 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:20983169 GeneID:236663 MGI:3643273
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : predicted gene, EG236663 transcript_id : XM_141620.1

name	8430439B09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270984 GeneID:78147 MGI:1925397
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 8430439B09 gene transcript_id : XM_001477135.1

name	LOC669520 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271041 GeneID:669520
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical LOC669520 transcript_id : XM_001481253.1

name	Bcor (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66792787 GeneID:71458 MGI:1918708
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bcl6 interacting corepressor transcript_id : NM_175045.2

name	Bcor (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351506 GeneID:71458 MGI:1918708
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bcl6 interacting corepressor transcript_id : NM_175046.2

name	Bcor (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365597 GeneID:71458 MGI:1918708
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bcl6 interacting corepressor transcript_id : NM_175044.2

name	Bcor (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142346423 GeneID:71458 MGI:1918708
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bcl6 interacting corepressor transcript_id : NM_029510.2

name	2900008C10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270986 GeneID:72937 MGI:1920187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 15 ESTs product : RIKEN cDNA 2900008C10 gene transcript_id : XM_001477165.1

name	LOC100043946 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271044 GeneID:100043946
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : hypothetical protein LOC100043946 transcript_id : XM_001481254.1

name	Rpgr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755348 CCDS:CCDS30014.1 GeneID:19893 MGI:1344037
definition	GO_component : GO:0005929 - cilium [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0005507 - copper ion binding [Evidence IEA]; GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0042462 - eye photoreceptor cell development [Evidence IMP]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence ISS] [Evidence IMP] codon_start : 1 product : retinitis pigmentosa GTpase regulator protein_id : NP_035415.1

name	Otc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679184 CCDS:CCDS30015.1 GeneID:18416 MGI:97448
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0009348 - ornithine carbamoyltransferase complex [Evidence IEA] GO_function : GO:0016597 - amino acid binding [Evidence IEA]; GO:0016743 - carboxyl- and carbamoyltransferase activity [Evidence IEA]; GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008652 - amino acid biosynthesis [Evidence IEA]; GO:0006520 - amino acid metabolism [Evidence IEA]; GO:0006526 - arginine biosynthesis [Evidence IEA]; GO:0000050 - urea cycle [Evidence IEA] codon_start : 1 note : sparse fur product : ornithine transcarbamylase protein_id : NP_032795.1

name	Tspan7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84662761 CCDS:CCDS30016.1 GeneID:21912 MGI:1298407
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : transmembrane 4 superfamily member 2 product : tetraspanin 7 protein_id : NP_062608.2

name	EG546265 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82999865 GeneID:546265 MGI:3647036
definition	codon_start : 1 product : similar to Chain A, Crystal Structure Of Human Rangap1-Ubc9 protein_id : XP_620954.2

name	LOC633354 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271040 GeneID:633354
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481302.1

name	LOC100042912 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270967 GeneID:100042912
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477023.1

name	Mid1ip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386020 CCDS:CCDS30018.1 GeneID:68041 MGI:1915291
definition	GO_component : GO:0005874 - microtubule [Evidence IEA]; GO:0015630 - microtubule cytoskeleton [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007026 - negative regulation of microtubule depolymerization [Evidence IGI] codon_start : 1 product : Mid1 interacting protein protein_id : NP_080800.1

name	LOC100042922 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270969 GeneID:100042922
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477042.1

name	LOC100042927 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270971 GeneID:100042927
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477056.1

name	LOC100042929 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270973 GeneID:100042929
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477073.1

name	LOC100042931 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270975 GeneID:100042931
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477085.1

name	OTTMUSG00000016790 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70608196 GeneID:547160 MGI:3649617
definition	codon_start : 1 note : Novel protein similar to Histone H2A product : hypothetical protein LOC547160 protein_id : NP_001020431.1

name	LOC100042939 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270977 GeneID:100042939
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477113.1

name	LOC100042943 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270979 GeneID:100042943
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477128.1

name	LOC100042944 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270981 GeneID:100042944
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477142.1

name	LOC100042946 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270983 GeneID:100042946
definition	codon_start : 1 product : similar to 1700012L04Rik protein protein_id : XP_001477156.1

name	EG236663 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20983170 GeneID:236663 MGI:3643273
definition	codon_start : 1 product : hypothetical protein protein_id : XP_141620.1

name	8430439B09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270985 GeneID:78147 MGI:1925397
definition	codon_start : 1 product : hypothetical protein LOC78147 protein_id : XP_001477185.1

name	LOC669520 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271042 GeneID:669520
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481303.1

name	Bcor (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41281849 CCDS:CCDS30022.1 GeneID:71458 MGI:1918708
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform d is encoded by transcript variant d; BCL-6 corepressor product : BCL-6 interacting corepressor isoform d protein_id : NP_778211.1

name	Bcor (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41281843 GeneID:71458 MGI:1918708
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform b is encoded by transcript variant b; BCL-6 corepressor product : BCL-6 interacting corepressor isoform b protein_id : NP_778209.1

name	Bcor (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66792788 CCDS:CCDS30021.1 GeneID:71458 MGI:1918708
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant c; BCL-6 corepressor product : BCL-6 interacting corepressor isoform c protein_id : NP_778210.2

name	Bcor (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28144863 GeneID:71458 MGI:1918708
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform a is encoded by transcript variant a; BCL-6 corepressor product : BCL-6 interacting corepressor isoform a protein_id : NP_083786.1

name	2900008C10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270987 GeneID:72937 MGI:1920187
definition	codon_start : 1 product : hypothetical protein LOC72937 protein_id : XP_001477215.1

name	LOC100043946 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271045 GeneID:100043946
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481304.1

name	LOC633361 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:633361
definition	number : 2 pseudo : _no_value

name	LOC633361 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:633361
definition	number : 1 pseudo : _no_value

name	Rpl23a-ps (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:628338
definition	number : 1 pseudo : _no_value

name	LOC385323 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385323
definition	number : 2 pseudo : _no_value

name	LOC385323 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385323
definition	number : 1 pseudo : _no_value

name	4933416E14Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149270965 GeneID:71180 MGI:1918430
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 4933416E14 gene transcript_id : XR_032962.1

name	LOC668982 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:94407008 GeneID:668982
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins product : similar to High mobility group box 1 pseudo : _no_value transcript_id : XR_002281.1

name	LOC100043945 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271043 GeneID:100043945
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)-like pseudo : _no_value transcript_id : XR_035068.1

clone name	MSMg01-217B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541B03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-381P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352F23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-490N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233D02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-264O12.b	B6Ng01-264O12.g
ACC	GA068692	GA068693
length	836	1,080
definition	B6Ng01-264O12.b	B6Ng01-264O12.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(10,917,495 - 10,918,338)	(10,777,651 - 10,778,735)
sequence	gaattctgcccacatacaaaggaagttaaggatgattacctccaccagtt aattttgagtgtattttccttttcatgagagtgctatatcatacaaatct gtctaaatacatttaaaagtgctcttttaataatgaaccacacaataaaa atcccaagagccatgaaagccttgtgttattgaatagtgacatttttttt ttctgattggtatacctagcatgttggtaattcttaaaagtgatgaatct cagactcaatcgaatataaggggcatgagaaggtgctcctgacgctatct taagcatctgggaagactgtcttgaaaaagtaacatcagttgactcaagt acaggatgctggaaaaggactctactcttcttaggaaggaagaactgcaa atgtagtctgcatttcttctctatcaaaaatatttatttatttatttatt tatttatttatttatttttatttattattcaggtgtgtggatgttttgct tatatgtatgtgctacatgtgtgaagtgtccacagagggcagaaaagggt attagatcctctggaactgatcttagtcctctggaaaccagccagtgccc ttgacctgtaagccatctctccagccccatctgcatttccttttattctc atgcaagtttccccatcagctgtttatggctgcccagaagttctgctgcc cacttcctaaggctctcgggtcactggtgctgacttaggttaatctgggg gaatgacaataattcgagccagaagaacctccaaggttttttttggtggt tggttgattttttttttgaaaggggggggcgggcag	gaattcatcatgagtgctagaagtcaccttggagctcactggcttctgtc ctgtgaagattgagaacctaacttctgtccaagggactgcagtataatgt ctcaccactgaagccaaatgctcaacaaaatcatcatgaatgctgtctct aaagactggttagcagtttcttagggaaacatggtaaaaaggtgatcggg agccacttaggcaaggttttcataagtgtcttcagcttctgctaaatgaa ctgtaccctcaacaaaagtagtttatgaacttagagatgttatgactgtt tcctcaacagtctctcttctcccagctccctcacttgctttcaatctatc ccttctctatcttctcctacattctttcaagtctctgggtgcctgttttg aggctaactgttgtcaactcactccaggttttcttctggcttcagttctc tctatgtctgttttgttgttgttttggttttggttttggtttggtttgtt ttctggtttttcactcttccttgaccttaaaacaaatacactagggcatg gttattttatgaagttctttggattttaatgacctttgtttcagacattg tacattttggctctactctatatctatctatctctatctatctatctatc tatctatctatctatctatctatctatctatctatctatctatctatcta tccatccatccatctacctacctacctacctacctatctacctacctact tatctatcatgtatgtattttattgtttgagatgaaatctcatgcagtcc aggctggcatcaaactccctatgtagctggcaatggctttgaactttgga tctccctgacttcacctcctgagtgctggaatacaggtatgtgccaccat tcccagtttatgtagtgttgacgaacattacgtgtgctagcccagtactg gacaactgatctaagccttcatccccttttaaataataagtatgctgaga tggcccctcttcatataccttagcatacgtcccttagttattgagcaagc ttaggcagctactctgatcattaattgata
quality values	Open. Hide. 52 41 22 35 62 62 49 47 56 62 37 24 62 33 62 62 47 21 62 62 62 62 49 62 62 62 62 62 54 62 62 43 43 28 24 20 22 26 28 28 34 56 59 46 62 59 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 49 62 62 54 62 62 54 49 62 62 62 62 62 62 62 54 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 46 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 58 42 58 58 58 54 58 58 58 52 58 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 52 58 58 58 58 58 58 58 45 42 52 58 58 52 58 58 58 48 54 58 54 58 51 58 58 58 58 58 58 58 58 50 58 39 58 58 51 53 53 58 58 58 58 58 58 58 50 53 49 49 50 50 51 54 44 48 49 51 54 49 46 58 52 46 51 58 47 46 52 42 51 58 30 27 58 53 54 58 58 54 58 58 52 36 58 28 19 51 53 51 50 52 53 53 52 53 53 49 41 52 33 46 40 51 32 54 40 49 34 54 21 31 50 51 39 25 54 53 52 53 32 45 42 39 53 52 52 37 27 52 54 44 46 39 53 43 45 52 42 45 45 39 29 54 54 54 54 32 54 35 28 27 54 39 54 53 54 32 52 33 52 33 24 17 30 29 40 45 53 42 42 32 47 30 37 31 52 33 47 34 47 32 52 52 47 33 49 32 51 31 51 25 33 46 13 22 12 19 6 25 18 42 28 45 30 43 31 31 25 33 17 51 51 32 31 29 33 33 34 38 38 31 42 35 34 34 42 36 36 34 36 32 31 32 31 31 30 43 32 31 28 25 25 30 35 19 34 36 32 31 19 25 39 28 46 33 23 30 15 41 48 41 20 7 37 32 16 26 20 32 38 22 33 20 22 36 31 29 27 32 31 19 21 23 32 31 27 27 26 24 32 36 29 17 32 27 21 24 22 24 30 21 48 31 18 28 27 21 21 33 14 14 26 33 22 48 22 29 21 24 33 20 18 25 25 25 25 29 23 25 28 21 31 21 14 14 17 8 31 11 18 29 48 48 32 24 22 22 22 32 22 21 27 48 25 17 30 22 48 48 33 17 14 32 19 10 11 24 32 27 15 14 29 15 30 48 22 14 48 48 37 21 34 32 31 15 17 18 18 9 7 6 5 9 10 26 17 20 31 19 34 19 13 9 7 13 4 13 11 13 24 27 21 17 21 19 29 8 9 20 27 22 13 9 6 19 12 15 21 5 11 6 28 4 3 29 20 8 11 18 11 24 15 12 7 21 19 24 12 24 9 19 13 15 6 8 16 13 17 27 16 28 12 27 38 47 38 13 18 16 3 9 11 10 19 13 24 13 19 8 16 6 5 8 6 9 7 28 11 28 10 9 6 6 4 6 7 7 21 8 5 21 21 17 40 47 32 34 25 26 17 4 6 24 14 11 14 8 15 12 7 14 3 2 5 28 26 26 23 23 20 22 23 9 4 6 11 2 2 8 26 6 29 26 28 8 3 17 25 17 4 3 3	Open. Hide. 62 59 59 59 62 59 43 62 59 59 62 43 35 23 28 32 34 27 29 23 42 56 59 62 62 62 59 62 62 62 54 62 59 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 59 54 54 59 59 38 36 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 59 62 62 62 62 54 54 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 54 54 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 54 58 58 58 58 58 58 58 58 58 58 49 43 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 52 58 58 58 58 58 58 58 58 58 58 42 39 58 58 54 58 58 58 58 54 51 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 51 58 54 58 58 58 51 49 58 58 51 58 58 58 58 36 31 58 58 52 58 58 51 58 58 51 58 58 58 58 54 58 58 54 53 41 50 58 40 42 58 58 58 54 50 52 53 44 58 58 58 58 58 58 54 58 47 51 54 54 58 39 58 53 58 51 58 50 54 54 54 53 54 54 54 51 54 49 54 52 54 49 51 31 54 38 54 54 54 47 54 54 54 40 54 50 54 44 44 42 54 26 35 51 49 39 49 44 42 39 44 42 35 22 35 39 42 39 54 44 54 44 54 47 54 46 54 54 54 33 54 33 53 34 52 41 49 31 52 42 53 30 41 53 51 51 31 53 52 47 34 37 49 41 41 47 45 52 32 33 46 47 42 47 46 32 32 31 40 40 41 40 40 40 33 31 19 38 41 31 45 28 31 32 27 20 22 33 40 31 37 29 33 21 19 40 40 40 40 40 42 31 34 43 27 40 31 43 29 34 27 46 46 16 27 32 43 46 33 46 41 31 40 25 42 32 31 33 46 31 27 32 42 31 27 26 30 36 24 29 32 39 30 37 15 17 18 15 25 39 25 21 31 32 31 47 29 29 39 31 46 39 31 31 32 31 31 31 25 31 26 15 21 24 29 25 30 25 38 31 38 44 31 21 36 27 26 37 48 24 28 26 18 22 21 31 31 44 25 7 16 30 32 31 31 33 12 17 31 21 19 14 8 19 26 11 24 32 17 30 18 19 30 32 10 10 14 10 15 19 15 14 22 21 22 18 21 32 32 34 29 16 31 8 5 47 21 31 27 27 47 19 18 21 34 31 32 28 11 29 10 13 24 18 6 4 7 5 5 8 10 29 14 17 13 13 18 19 28 24 13 13 6 13 30 7 23 13 18 28 28 28 22 18 22 16 6 27 28 16 26 32 24 28 16 22 22 7 15 15 25 7 8 10 19 19 38 38 22 14 34 21 22 16 38 13 7 6 4 13 6 5 14 3 6 18 28 23 26 16 22 9 19 5 9 14 10 16 17 13 6 9 12 22 23 9 10 7 19 9 16 24 11 11 23 7 14 10 10 8 19 7 22 18 26 20 17 10 21 7 11 8 6 4 4 22 14 8 6 4 2 7 22 12 6 6 7 7 20 15 13 18 6 9 6 4 9 14 8 15 7 10 4 10 12 10 5 11 17 9 12 14 14

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_10917495_10918338
seq2: B6Ng01-264O12.b_48_883 (reverse)

seq1  CTGCCCCCCCCCCACTTCAAAAAAAAAAAACAAACAAACAAACAAAAAAA  50
      |||||| |||||| |||  ||||||||    || ||| ||| ||  ||||
seq2  CTGCCCGCCCCCCCCTTTCAAAAAAAA----AATCAACCAACCACCAAAA  46

seq1  AAAACCCTGGAG--TCTTCTTGCTCTGATTATTGTCATTTTCCCCCAGAT  98
      |||||| |||||  |||||| ||||  ||||||||||  |||||||||||
seq2  AAAACCTTGGAGGTTCTTCTGGCTCGAATTATTGTCA--TTCCCCCAGAT  94

seq1  TAACTTAAGTCAGCACAGTTGACCCCGAAGAGCCTTAGGAAGTGGGCAGC  148
      |||| |||||||||||   ||||||   ||||||||||||||||||||||
seq2  TAACCTAAGTCAGCACCAGTGACCC--GAGAGCCTTAGGAAGTGGGCAGC  142

seq1  AGAACTTTCTGGGCAGCCATAGACAGCTGATGGGGAAACTTGCATGAGAA  198
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAAC-TTCTGGGCAGCCATAAACAGCTGATGGGGAAACTTGCATGAGAA  191

seq1  TAAAAGGAAATGCAGATGGGGCTGGAGAGATGGCTTACAGGTCAAGGGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAAATGCAGATGGGGCTGGAGAGATGGCTTACAGGTCAAGGGCA  241

seq1  CTGGCTGGTTTCCAGAGGACTAAGATCAGTTCCAGAGGATCTAATACCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGTTTCCAGAGGACTAAGATCAGTTCCAGAGGATCTAATACCCT  291

seq1  TTTCTGCCCTCTGTGGACACTTCACACATGTAGCACATACATATAAGCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCCTCTGTGGACACTTCACACATGTAGCACATACATATAAGCAA  341

seq1  AACATCCACACACCTGAAATAATAAATAAAAATAAATAAATAAATAAATA  398
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACATCCACACACCTG-AATAATAAATAAAAATAAATAAATAAATAAATA  390

seq1  AATAAATAAATAAATATTTTTGATAGAGAAGAAATGCAGACTACATTTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATATTTTTGATAGAGAAGAAATGCAGACTACATTTGC  440

seq1  AGTTCTTCCTTCCTAAGAAGAGTAGAGTCCTTTTCCAGCATCCTGTACTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCCTTCCTAAGAAGAGTAGAGTCCTTTTCCAGCATCCTGTACTT  490

seq1  GAGTCAACTGATGTTACTTTTTCAAGACAGTCTTCCCAGATGCTTAAGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAACTGATGTTACTTTTTCAAGACAGTCTTCCCAGATGCTTAAGAT  540

seq1  AGCGTCAGGAGCACCTTCTCATGCCCCTTATATTCGATTGAGTCTGAGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCAGGAGCACCTTCTCATGCCCCTTATATTCGATTGAGTCTGAGAT  590

seq1  TCATCACTTTTAAGAATTACCAACATGCTAGGTATACCAATCAGAAAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTTTTAAGAATTACCAACATGCTAGGTATACCAATCAGAAAAAA  640

seq1  AAAATGTCACTATTCAATAACACAAGGCTTTCATGGCTCTTGGGATTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCACTATTCAATAACACAAGGCTTTCATGGCTCTTGGGATTTTT  690

seq1  ATTGTGTGGTTCATTATTAAAAGAGCACTTTTAAATGTATTTAGACAGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGGTTCATTATTAAAAGAGCACTTTTAAATGTATTTAGACAGAT  740

seq1  TTGTATGATATAGCACTCTCATGAAAAGGAAAATACACTCAAAATTAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGATATAGCACTCTCATGAAAAGGAAAATACACTCAAAATTAACT  790

seq1  GGTGGAGGTAATCATCCTTAACTTCCTTTGTATGTGGGCAGAATTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGTAATCATCCTTAACTTCCTTTGTATGTGGGCAGAATTC  836

seq1: chrX_10777651_10778735
seq2: B6Ng01-264O12.g_70_1149

seq1  GAATTCATCATGAGTGCTAGAAGTCACCTTGGAGCTCACTGGCTTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATGAGTGCTAGAAGTCACCTTGGAGCTCACTGGCTTCTGTC  50

seq1  CTGTGAAGATTGAGAACCTAACTTCTGTCCAAGGGACTGCAGTATAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGATTGAGAACCTAACTTCTGTCCAAGGGACTGCAGTATAATGT  100

seq1  CTCACCACTGAAGCCAAATGCTCAACAAAATCATCATGAATGCTGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCACTGAAGCCAAATGCTCAACAAAATCATCATGAATGCTGTCTCT  150

seq1  AAAGACTGGTTAGCAGTTTCTTAGGGAAACATGGTAAAAAGGTGATCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGGTTAGCAGTTTCTTAGGGAAACATGGTAAAAAGGTGATCGGG  200

seq1  AGCCACTTAGGCAAGGTTTTCATAAGTGTCTTCAGCTTCTGCTAAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTAGGCAAGGTTTTCATAAGTGTCTTCAGCTTCTGCTAAATGAA  250

seq1  CTGTACCCTCAACAAAAGTAGTTTATGAACTTAGAGATGTTATGACTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCCTCAACAAAAGTAGTTTATGAACTTAGAGATGTTATGACTGTT  300

seq1  TCCTCAACAGTCTCTCTTCTCCCAGCTCCCTCACTTGCTTTCAATCTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACAGTCTCTCTTCTCCCAGCTCCCTCACTTGCTTTCAATCTATC  350

seq1  CCTTCTCTATCTTCTCCTACATTCTTTCAAGTCTCTGGGTGCCTGTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTATCTTCTCCTACATTCTTTCAAGTCTCTGGGTGCCTGTTTTG  400

seq1  AGGCTAACTGTTGTCAACTCACTCCAGGTTTTCTTCTGGCTTCAGTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAACTGTTGTCAACTCACTCCAGGTTTTCTTCTGGCTTCAGTTCTC  450

seq1  TCTATGTCTGTTTTGTTGTTGTTTTGGTTTTGGTTTTGGTTTGGTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTCTGTTTTGTTGTTGTTTTGGTTTTGGTTTTGGTTTGGTTTGTT  500

seq1  TTCTGGTTTTTCACTCTTCCTTGACCTTAAAACAAATACACTAGGGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTTTTCACTCTTCCTTGACCTTAAAACAAATACACTAGGGCATG  550

seq1  GTTATTTTATGAAGTTCTTTGGATTTTAATGACCTTTGTTTCAGACATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTATGAAGTTCTTTGGATTTTAATGACCTTTGTTTCAGACATTG  600

seq1  TACATTTTGGCTCTACTCTATATCTATCTATCTCTATCTATCTATCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTGGCTCTACTCTATATCTATCTATCTCTATCTATCTATCTATC  650

seq1  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  700

seq1  TCCATCCATCCATCTACCTACCTACCTACCTACCTATCTACCTACCTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCATCCATCTACCTACCTACCTACCTACCTATCTACCTACCTACT  750

seq1  TATCTATCATGTATGTA-TTTATTGTTTGAGATGAAATCTCATGCAGTCC  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATCTATCATGTATGTATTTTATTGTTTGAGATGAAATCTCATGCAGTCC  800

seq1  AGGCTGGCATCAAACTCCCTATGTAGCTGGCAATGGCTTTGAACTTTGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCATCAAACTCCCTATGTAGCTGGCAATGGCTTTGAACTTTGGA  850

seq1  TCTCCCTGACTTCACCTCCTGAGTGCTGGAAATACAGGTATGTGCCACCA  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTCCCTGACTTCACCTCCTGAGTGCTGG-AATACAGGTATGTGCCACCA  899

seq1  TTCCCAGTTTATGTAGTGTTGACGGACATTACGTGTGCTAGCCAAGTACT  949
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  TTCCCAGTTTATGTAGTGTTGACGAACATTACGTGTGCTAGCCCAGTACT  949

seq1  GGACCAACTGATCTAAGCCTTCATCCCCTTTTAAATATTAGGTATGCTGA  999
      ||| ||||||||||||||||||||||||||||||||| || |||||||||
seq2  GGA-CAACTGATCTAAGCCTTCATCCCCTTTTAAATAATAAGTATGCTGA  998

seq1  GATGGCCCCTCTTCATATACCTTAAGCATACGTCCCTTAAGTTATGGAGC  1049
      ||||||||||||||||||||||| |||||||||||||| |||||| ||||
seq2  GATGGCCCCTCTTCATATACCTT-AGCATACGTCCCTT-AGTTATTGAGC  1046

seq1  ACAGCTATAGCAGCTACTCTGAATCATTATTTGATA  1085
      | ||||   |||||||||||| ||||||| ||||||
seq2  A-AGCTTAGGCAGCTACTCTG-ATCATTAATTGATA  1080

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BAC

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Alignment Information