BAC Information

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BAC

Clone NameB6Ng01-265P21
ChromosomeX (Build37)
Map Location 163,045,508 - 163,199,837
singlet/doubletdoublet
Overlap geneLOC100041912
Upstream geneLOC100040753, Gemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6
Downstream geneLOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311, Frmpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265P21.bB6Ng01-265P21.g
ACCGA069499GA069500
length1,1451,112
definitionB6Ng01-265P21.b B6Ng01-265P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,045,508 - 163,046,671)(163,198,709 - 163,199,837)
sequence
gaattccaggacagccagggctatacagagaaatcctgtctcgaaaaaaa
ccaaaaaaaaaaaaaaaaaaaataagaagaattccttacaggcataccca
gctgtttgagctttaggcaatatcagatgtagttaagttaacatgcaaga
atagccatcacaaatacacacacacacacacacacacacatacacacgta
tataaacatatatgtatgtatatatagtatatatatataaaatgttcaca
tacataatttttttaaatcttaaaaagtccattcctatttcccagatgga
aaaaaactagaattcatgtaggagttggtccatggaccatgttttgctga
tccctgctacagagaagagcagtttcctcatccatttctggaatccatgc
aggctggtattgatgtgctacctaagtggcaatttcatcctcaatgctga
tgcttctttcttggaggaagagttgagacaaatccaatctccccttgaag
cttaggcagaaagaccaaactggctactgtctggaagaactttaaattaa
aaaaaattaaattgcaagcataaggaagatacttctaaaaatatctaata
tctatatctatctatatctatatatcaagtgtccatgttttctttgaact
tgacttgggaaaataccatagaaattgaactcgaattggattcccagagt
gtctttaaaaaaaaaaaagattcagagaatattaaaaccatttaacattt
atctgtggaaaatgatagaagataggtgcaacgaaaatttcattgactat
tattttatttcaatgaatattaaacattttgggttttaagacttcagggt
cacatacaatgttgtgttataatactgagttgttttataatttgttttct
ttttcttacgtagcaaaagatacagaatttttttaaatgccagctgtaca
ttttacctctagagcaggaagtcattttactataaataaacatcaaatac
agctgcaggtttgcaactttcaatttgctttctaggttctctcggtcgtc
gtcgtcatcatcatcatcatcgacagatctgctatgttagctagttgtct
aaactcaatgtagctatgaagttgtctcactcctgacattcactt
gaattctattcatccaagaccttcttcaaggcattaagccagttgctctc
acccgtcctaatgctgtgaccctttaatacagttcctcatattgtcgtga
ccctcaaccatacaattagtttcattgctacttcataactgtagttttgt
tatggttagaaatcataatgttaatatatgtttccaatggtcttaggtga
cccctgtgaaagggtgatgtgacccctaaaggggttgtgacacataggct
aagaactactgatttaaactaagatcgaacatgctatctgtttccaagac
catacatttcttcatcaaaacaaaaatgtctccctcccattcaagtgtat
atgaactgcattgctctgtgttaagattcattgagaagatgctagcttta
aaatttagaagttgaaaatatgcttccaccatgataaattacactactgt
gttagctcttatgatttcaaacactaaaataaatgatggtggtaaagaga
aagaatatatgcttgtcattttttaataagcctttatcctccactagtct
atttgatatatagccaggtcaatcaatgataactataatgaaaaattttg
cttgactaagaataggcatatcactcagaccatgtttttctaaaaataaa
aaattctatagatagcttagtaaggatagaaagatactttaaatttcata
tttgggaatgacaggtgaaatttcaagctgccagggttaaaataattgta
gcatctagcgatgcattggcatcgagagctgatgtattgatgagggggaa
agatcctagccgaatatagccagacaatttagatacagaggattcaaaag
agcaggcatagagaggaggctccaagtgcctggagctaaatgtattgatt
gaaagatcagcatactagcagaagcatccattaagccaaatatcattgta
ccagggaacagggggaaaatgaaagctctaaacatgaaatggctttgtat
ctgagatgagactgaatattatctatgtctcatccctgaacgtttttcta
aagcctagggttctgaactatagttgttattactacatgaaaatggagac
atatgttataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_163045508_163046671
seq2: B6Ng01-265P21.b_45_1189

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAATCCTGTCTCGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAATCCTGTCTCGAAAAAAA  50

seq1  CCAAAAAAAAAAAAAAAAAAAATAAGAAGAATTCCTTACAGGCATACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAAAAAAAAAAAAATAAGAAGAATTCCTTACAGGCATACCCA  100

seq1  GCTGTTTGAGCTTTAGGCAATATCAGATGTAGTTAAGTTAACATGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGAGCTTTAGGCAATATCAGATGTAGTTAAGTTAACATGCAAGA  150

seq1  ATAGCCATCACAAATACACACACACACACACACACACACATACACACGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCATCACAAATACACACACACACACACACACACACATACACACGTA  200

seq1  TATAAACATATATGTATGTATATATAGTATATATATATAAAATGTTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACATATATGTATGTATATATAGTATATATATATAAAATGTTCACA  250

seq1  TACATAATTTTTTTAAATCTTAAAAAGTCCATTCCTATTTCCCAGATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATTTTTTTAAATCTTAAAAAGTCCATTCCTATTTCCCAGATGGA  300

seq1  AAAAAACTAGAATTCATGTAGGAGTTGGTCCATGGACCATGTTTTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTAGAATTCATGTAGGAGTTGGTCCATGGACCATGTTTTGCTGA  350

seq1  TCCCTGCTACAGAGAAGAGCAGTTTCCTCATCCATTTCTGGAATCCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTACAGAGAAGAGCAGTTTCCTCATCCATTTCTGGAATCCATGC  400

seq1  AGGCTGGTATTGATGTGCTACCTAAGTGGCAATTTCATCCTCAATGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGTATTGATGTGCTACCTAAGTGGCAATTTCATCCTCAATGCTGA  450

seq1  TGCTTCTTTCTTGGAGGAAGAGTTGAGACAAATCCAATCTCCCCTTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTTCTTGGAGGAAGAGTTGAGACAAATCCAATCTCCCCTTGAAG  500

seq1  CTTAGGCAGAAAGACCAAACTGGCTACTGTCTGGAAGAACTTTAAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCAGAAAGACCAAACTGGCTACTGTCTGGAAGAACTTTAAATTAA  550

seq1  AAAAAATTAAATTGCAAGCATAAGGAAGATACTTCTAAAAATATCTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAATTGCAAGCATAAGGAAGATACTTCTAAAAATATCTAATA  600

seq1  TCTATATCTATCTATATCTATATATCAAGTGTCCATGTTTTCTTTGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATCTATCTATATCTATATATCAAGTGTCCATGTTTTCTTTGAACT  650

seq1  TGACTTGGGAAAATACCATAGAAATTGAACTCGAATTGGATTCCCAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGGGAAAATACCATAGAAATTGAACTCGAATTGGATTCCCAGAGT  700

seq1  GTCTTTAAAAAAAAAAAAGATTCAGAGAATATTAAAACCATTTAACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAAAAAAAAAAAAGATTCAGAGAATATTAAAACCATTTAACATTT  750

seq1  ATCTGTGGAAAATGATAGAAGATAGGTGCAACGAAAATTTCATTGACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGAAAATGATAGAAGATAGGTGCAACGAAAATTTCATTGACTAT  800

seq1  TATTTTATTTCAATGAATATTAAACATTTTGGGTTTTAAGACTTCAGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTCAATGAATATTAAACATTTTGGGTTTTAAGACTTCAGGGT  850

seq1  CACATACAATGTTGTGTTATAATACTGAGTTGTTTTATAATTTGTTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAATGTTGTGTTATAATACTGAGTTGTTTTATAATTTGTTTTCT  900

seq1  TTTTCTTACGTAGC-AAAGATACAGAATTTTTTTAAATGCCAGCTGTACA  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTTCTTACGTAGCAAAAGATACAGAATTTTTTTAAATGCCAGCTGTACA  950

seq1  TTTTACCTCTAGAGCAGGGAAGTCATTTTAACTATAAATAAAACATCAAA  999
      |||||||||||||||| |||||||||||| ||||||||| ||||||| ||
seq2  TTTTACCTCTAGAGCA-GGAAGTCATTTT-ACTATAAAT-AAACATC-AA  996

seq1  ATACAGCTGCAGGTTTTGCAACTTTCAATTTGCTTTTCTTAGTTTCTCCT  1049
      ||||||||||||| ||||||||||||||||||||||   ||| |||| ||
seq2  ATACAGCTGCAGG-TTTGCAACTTTCAATTTGCTTT--CTAGGTTCT-CT  1042

seq1  CCGTCGTCGTCGTCATCATCATCATCATCGACAGAATCTTGCTATG-TAG  1098
      | |||||||||||||||||||||||||||||||| ||| ||||||| |||
seq2  CGGTCGTCGTCGTCATCATCATCATCATCGACAG-ATC-TGCTATGTTAG  1090

seq1  CTTAGGTTGGTCTTAAACTCAATGTAGCCTATGTAGGTTGGCCTCAAACT  1148
      | |||  | ||| |||||||||||||| ||||| | ||||   ||  |||
seq2  C-TAG--TTGTC-TAAACTCAATGTAG-CTATG-AAGTTG---TCTCACT  1131

seq1  CCTGACCATTCTACTT  1164
      ||||| ||||| ||||
seq2  CCTGA-CATTC-ACTT  1145

seq1: chrX_163198709_163199837
seq2: B6Ng01-265P21.g_65_1176 (reverse)

seq1  TCTATAACATATGTCTCATTTTTTCATGTAGTAATAACCACTATAGTCAA  50
      |||||||||||||||||   |||||||||||||||||| ||||||||  |
seq2  TCTATAACATATGTCTC-CATTTTCATGTAGTAATAACAACTATAGTTCA  49

seq1  GAACCCTAGGGCTTTTAAGAAAACGTTTCAGGGATGGAGACATAGAT-AT  99
      |||||||| ||||||  ||||||   ||||||||| ||||||||||| ||
seq2  GAACCCTA-GGCTTT--AGAAAAACGTTCAGGGAT-GAGACATAGATAAT  95

seq1  ATTCAGGTCTCATCTCAGGAATACAAAAGCCATTTCATTGTTTAAGAGCT  149
      ||||| ||||||||||||  |||| |||||||||||| ||||| ||||||
seq2  ATTCA-GTCTCATCTCAG--ATAC-AAAGCCATTTCA-TGTTT-AGAGCT  139

seq1  TTCCATTTTCCCCCTGGTTTCCCTGGTTACAATGAATATTTTGGCTTAAT  199
      || |||||||||||||  |||||||| ||||||| ||| |||||||||||
seq2  TT-CATTTTCCCCCTG--TTCCCTGG-TACAATG-ATA-TTTGGCTTAAT  183

seq1  GGATGCTTCTGCTAGTATGCTGATCTTTTCAATCAATACATTTAGCTCCA  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGATGCTTCTGCTAGTATGCTGATC-TTTCAATCAATACATTTAGCTCCA  232

seq1  GGCACTTGGAGCCTCCTCTCTATGCCTGCTCTTTTGAATCCTCTGTATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTGGAGCCTCCTCTCTATGCCTGCTCTTTTGAATCCTCTGTATCT  282

seq1  AAATTGTCTGGCTATATTCGGCTAGGATCTTTCCCCCTCATCAATACATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCTGGCTATATTCGGCTAGGATCTTTCCCCCTCATCAATACATC  332

seq1  AGCTCTCGATGCCAATGCATCGCTAGATGCTACAATTATTTTAACCCTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCGATGCCAATGCATCGCTAGATGCTACAATTATTTTAACCCTGG  382

seq1  CAGCTTGAAATTTCACCTGTCATTCCCAAATATGAAATTTAAAGTATCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGAAATTTCACCTGTCATTCCCAAATATGAAATTTAAAGTATCTT  432

seq1  TCTATCCTTACTAAGCTATCTATAGAATTTTTTATTTTTAGAAAAACATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTTACTAAGCTATCTATAGAATTTTTTATTTTTAGAAAAACATG  482

seq1  GTCTGAGTGATATGCCTATTCTTAGTCAAGCAAAATTTTTCATTATAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGTGATATGCCTATTCTTAGTCAAGCAAAATTTTTCATTATAGTT  532

seq1  ATCATTGATTGACCTGGCTATATATCAAATAGACTAGTGGAGGATAAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGATTGACCTGGCTATATATCAAATAGACTAGTGGAGGATAAAGG  582

seq1  CTTATTAAAAAATGACAAGCATATATTCTTTCTCTTTACCACCATCATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAAAAATGACAAGCATATATTCTTTCTCTTTACCACCATCATTT  632

seq1  ATTTTAGTGTTTGAAATCATAAGAGCTAACACAGTAGTGTAATTTATCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTGTTTGAAATCATAAGAGCTAACACAGTAGTGTAATTTATCAT  682

seq1  GGTGGAAGCATATTTTCAACTTCTAAATTTTAAAGCTAGCATCTTCTCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAGCATATTTTCAACTTCTAAATTTTAAAGCTAGCATCTTCTCAA  732

seq1  TGAATCTTAACACAGAGCAATGCAGTTCATATACACTTGAATGGGAGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTAACACAGAGCAATGCAGTTCATATACACTTGAATGGGAGGGA  782

seq1  GACATTTTTGTTTTGATGAAGAAATGTATGGTCTTGGAAACAGATAGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTTGTTTTGATGAAGAAATGTATGGTCTTGGAAACAGATAGCAT  832

seq1  GTTCGATCTTAGTTTAAATCAGTAGTTCTTAGCCTATGTGTCACAACCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGATCTTAGTTTAAATCAGTAGTTCTTAGCCTATGTGTCACAACCCC  882

seq1  TTTAGGGGTCACATCACCCTTTCACAGGGGTCACCTAAGACCATTGGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGGTCACATCACCCTTTCACAGGGGTCACCTAAGACCATTGGAAA  932

seq1  CATATATTAACATTATGATTTCTAACCATAACAAAACTACAGTTATGAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTAACATTATGATTTCTAACCATAACAAAACTACAGTTATGAAG  982

seq1  TAGCAATGAAACTAATTGTATGGTTGAGGGTCACGACAATATGAGGAACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGAAACTAATTGTATGGTTGAGGGTCACGACAATATGAGGAACT  1032

seq1  GTATTAAAGGGTCACAGCATTAGGACGGGTGAGAGCAACTGGCTTAATGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAAGGGTCACAGCATTAGGACGGGTGAGAGCAACTGGCTTAATGC  1082

seq1  CTTGAAGAAGGTCTTGGATGAATAGAATTC  1129
      ||||||||||||||||||||||||||||||
seq2  CTTGAAGAAGGTCTTGGATGAATAGAATTC  1112