BAC Information

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BAC

Clone NameB6Ng01-266I20
ChromosomeX (Build37)
Map Location 162,559,389 - 162,675,057
singlet/doubletdoublet
Overlap geneGemin8
Upstream geneGlra2, LOC100040753
Downstream geneGpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266I20.bB6Ng01-266I20.g
ACCGA069921GA069922
length1,0271,148
definitionB6Ng01-266I20.b B6Ng01-266I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,559,389 - 162,560,012)(162,673,922 - 162,675,057)
sequence
gaattctttgtttagctctgagcctcattttttattagggttattcggtt
tcctggaacccaacttcttgagttctttatatatatattgaatattatcc
ccctatcggatttaggattggtaaagatcttttaccaatctgttggtggc
ctttttgtcttactgacagtttcctttgccttacagaagctctgcaattt
tatgaggtcctattgatcgattcttgatcttacagctcaagccattgatg
ttctgtttaggaatttttcccctgtgcccatatcttccaggctttccccc
actttctcttcttttggttttagtgtctttggttttatgtggagttcctt
gatccacatagatatgagctttgtaaaaagagataagaatggatcaatta
acattcttctacatgataactgccaattgagccagcaccatttgttaaaa
tgctgtctttttcgcactggatggttttagcacctttgtcaaagatcaag
tgactataggtgtgtgggttcatttctgggtcttcaattctatcccattg
atctacctgtctgtcattgtaccagtactgtgcagtttttatcataattg
ttctgtagtacagcttgaggtcaggcatggtgattccaccaaaggttctt
ttattgttgaaaatagtttactatcctagatctttggttattccagatga
ataggcaaaattgctctgtctaactctgtgaagaattgaattggaatttt
gatggggattgcatttgaatctgtagattgcttttggcaagatacacatt
ttttactatattaatccttccaatcaatgatcatggggagatactttcca
tccttctgagatctttctatgatttcttttttttccagtttttttcaaaa
ataatttttattagatattttccttttttacatttcaaatgcctattgaa
aaaaaattctcaccatcagattccttcttacaaaggcttatacctcaaca
tatcttggaaaacctgggacgaaatgg

gaattccctttcttcaaataaaactaatgttcccatgttaagtagccaca
gactttacaaattaaaacaagatgcactgcaggtgggtgaacaaattggg
caaggctttctggaaagctgtttggcagtgtgtgtcaagaaacttcaaaa
tatgcattgcccctgacctagtaagtcccctcctgagactctcacctcag
taaataatgagagttaaagtcaaaatgaatgcaaaaggatgtttatcaga
tggcgagataaaatagcaaataaaacaacaaaacaaaaacaggaaagcaa
ccattgctcaactcgcaggaagtagctgaagaaaagtctttgctgagttt
gctctgtgcgtctcaactgaaatgggttttgtgaccctggcccccagctg
tctctccccatctccctctccttctctctcccctagaggccccagagaca
taaatttagccatctctgaggagttttgagcatttcaaacaggtaggaag
gcacatctctgtcctgttcaccctgggactgctacagatgtctccaagct
gtgggactattggtctgagctacaggggataaacacagaggctcatcccg
aggttcccttttagggctgctatccagctgggctgtgacttagagaatag
gggaaagggttgcatcctgtgggcaggtcttaaagagtctgaggttagaa
ctgaggacttagacacatagaaatgagcagtagcctgggggctctgtatt
tcaaagctgactaaaaaacagatcctgcctttaaaacataggtcatttca
tgctgctcctctgagtcatagcaattggcaaacactttttaatgtgggtt
tgtattgagtatctcaatccagcagtttgggccatgtctgtcttccaggg
ttagggcctttcatagtccatatttttgcaccatggcccaagtttcccca
catgtatgagtttagatcaacaggttcacaagaaaatacacccggaaact
gataacaatgccccaagactgtggcctaactagacagagactacagctaa
tctgacaagtggtcttccttgcattctgcagaatacaatttaaaccgaac
cattcatacagctcaaaatattaacttacctggttctagtttcatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_162559389_162560012
seq2: B6Ng01-266I20.b_429_1068

seq1  AATGGATCAATTAACATTCTTCTACATGATAACTGCCAATTGAGCCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATCAATTAACATTCTTCTACATGATAACTGCCAATTGAGCCAGCA  50

seq1  CCATTTGTTAAAATGCTGTCTTTTTCGCACTGGATGGTTTTAGCACCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTTAAAATGCTGTCTTTTTCGCACTGGATGGTTTTAGCACCTTT  100

seq1  GTCAAAGATCAAGTGACTATAGGTGTGTGGGTTCATTTCTGGGTCTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGATCAAGTGACTATAGGTGTGTGGGTTCATTTCTGGGTCTTCAA  150

seq1  TTCTATCCCATTGATCTACCTGTCTGTCATTGTACCAGTACTGTGCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCCCATTGATCTACCTGTCTGTCATTGTACCAGTACTGTGCAGTT  200

seq1  TTTATCATAATTGTTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATAATTGTTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATTCC  250

seq1  ACCAAAGGTTCTTTTATTGTTGAAAATAGTTTACTATCCTAGATCTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGTTCTTTTATTGTTGAAAATAGTTTACTATCCTAGATCTTTGG  300

seq1  TTATTCCAGATGAATAGGC-AAATTGCTCTGTCTAACTCTGTGAAGAATT  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTATTCCAGATGAATAGGCAAAATTGCTCTGTCTAACTCTGTGAAGAATT  350

seq1  GAATTGGAATTTTGATGGGGATTGCA-TTGAATCTGTAGATTGCTTTTGG  398
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATTGGAATTTTGATGGGGATTGCATTTGAATCTGTAGATTGCTTTTGG  400

seq1  CAAGATACACA-TTTTTACTATATTAATCCTTCCAATCAATGATCAT-GG  446
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  CAAGATACACATTTTTTACTATATTAATCCTTCCAATCAATGATCATGGG  450

seq1  GAGATAC-TTCCAT-CTTCTGAGATC-TTCTATGATTTC-TTTTTTTCCA  492
      ||||||| |||||| ||||||||||| |||||||||||| ||||||||||
seq2  GAGATACTTTCCATCCTTCTGAGATCTTTCTATGATTTCTTTTTTTTCCA  500

seq1  GTTTTTTTCAAAAATAATTTTTATTAGATATTTTCTTTTTTTACATTTCA  542
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTTTTTTCAAAAATAATTTTTATTAGATATTTTCCTTTTTTACATTTCA  550

seq1  AATG-CTATTGAAAAAAA--TCTCACCATCAGA-TCCTTC-TACAAAAGG  587
      |||| |||||||||||||  ||||||||||||| |||||| |||||| | 
seq2  AATGCCTATTGAAAAAAAATTCTCACCATCAGATTCCTTCTTACAAAGGC  600

seq1  CTATA-CTCAACAAATC-TGGAAAACCT-GGACGAAATGG  624
       |||| ||||||| ||| |||||||||| |||||||||||
seq2  TTATACCTCAACATATCTTGGAAAACCTGGGACGAAATGG  640


seq1: chrX_162673922_162675057
seq2: B6Ng01-266I20.g_67_1214 (reverse)

seq1  GAAATGAAACTAGAA-CAGGTTAGTTAAATATTTTTGGAGCTGTATGAAT  49
      ||||||||||||||| ||||| |||| ||||||||  |||||||||||||
seq2  GAAATGAAACTAGAACCAGGTAAGTT-AATATTTT--GAGCTGTATGAAT  47

seq1  GGTTCGTTTTAAAATTGTA-TCTGCAG-ATGCAAGG-AGA-CAC-TGTCA  94
      |||||| ||| |||||||| ||||||| |||||||| ||| ||| |||||
seq2  GGTTCGGTTT-AAATTGTATTCTGCAGAATGCAAGGAAGACCACTTGTCA  96

seq1  GATTAGCTGTAGTCTCTGTCTAGTTA-GCCACAGTCTTGGGCATTTGTTA  143
      |||||||||||||||||||||||||| ||||||||||||||   ||||||
seq2  GATTAGCTGTAGTCTCTGTCTAGTTAGGCCACAGTCTTGGGGCATTGTTA  146

seq1  TCAG-TTCCGGGTGTATTT--CTGTGAA-CTG-TGATCTAAACTCATACA  188
      |||| ||||||||||||||   |||||| ||| |||||||||||||||||
seq2  TCAGTTTCCGGGTGTATTTTCTTGTGAACCTGTTGATCTAAACTCATACA  196

seq1  TGT-GGGAAACTT-GGCCATGGTGCAAAAATATGGACTATGAAAGGCCCT  236
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGAAACTTGGGCCATGGTGCAAAAATATGGACTATGAAAGGCCCT  246

seq1  AACCCTGG-AGACAGACATGGCCCAAACTGCTGGATTGAGATACTCAATA  285
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGAAGACAGACATGGCCCAAACTGCTGGATTGAGATACTCAATA  296

seq1  CAAA-CCACATTAAAAAGTGTTTGCCAATTGCTATGACTCAGAGGAGCAG  334
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCACATTAAAAAGTGTTTGCCAATTGCTATGACTCAGAGGAGCAG  346

seq1  CATGAAATGACCTATGTTTTAAAGGCAGGATCTGTTTTTTAGTCAGCTTT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATGACCTATGTTTTAAAGGCAGGATCTGTTTTTTAGTCAGCTTT  396

seq1  GAAATACAGAGCCCCCAGGCTACTGCTCATTTCTATGTGTCTAAGTCCTC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACAGAGCCCCCAGGCTACTGCTCATTTCTATGTGTCTAAGTCCTC  446

seq1  AGTTCTAACCTCAGACTCTTTAAGACCTGCCCACAGGATGCAACCCTTTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAACCTCAGACTCTTTAAGACCTGCCCACAGGATGCAACCCTTTC  496

seq1  CCCTATTCTCTAAGTCACAGCCCAGCTGGATAGCAGCCCTAAAAGGGAAC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTCTCTAAGTCACAGCCCAGCTGGATAGCAGCCCTAAAAGGGAAC  546

seq1  CTCGGGATGAGCCTCTGTGTTTATCCCCTGTAGCTCAGACCAATAGTCCC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGATGAGCCTCTGTGTTTATCCCCTGTAGCTCAGACCAATAGTCCC  596

seq1  ACAGCTTGGAGACATCTGTAGCAGTCCCAGGGTGAACAGGACAGAGATGT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGGAGACATCTGTAGCAGTCCCAGGGTGAACAGGACAGAGATGT  646

seq1  GCCTTCCTACCTGTTTGAAATGCTCAAAACTCCTCAGAGATGGCTAAATT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTACCTGTTTGAAATGCTCAAAACTCCTCAGAGATGGCTAAATT  696

seq1  TATGTCTCTGGGGCCTCTAGGGGAGAGAGAAGGAGAGGGAGATGGGGAGA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCTGGGGCCTCTAGGGGAGAGAGAAGGAGAGGGAGATGGGGAGA  746

seq1  GACAGCTGGGGGCCAGGGTCACAAAACCCATTTCAGTTGAGACGCACAGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGGGGGCCAGGGTCACAAAACCCATTTCAGTTGAGACGCACAGA  796

seq1  GCAAACTCAGCAAAGACTTTTCTTCAGCTACTTCCTGCGAGTTGAGCAAT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTCAGCAAAGACTTTTCTTCAGCTACTTCCTGCGAGTTGAGCAAT  846

seq1  GGTTGCTTTCCTGTTTTTGTTTTGTTGTTTTATTTGCTATTTTATCTCGC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTTCCTGTTTTTGTTTTGTTGTTTTATTTGCTATTTTATCTCGC  896

seq1  CATCTGATAAACATCCTTTTGCATTCATTTTGACTTTAACTCTCATTATT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATAAACATCCTTTTGCATTCATTTTGACTTTAACTCTCATTATT  946

seq1  TACTGAGGTGAGAGTCTCAGGAGGGGACTTACTAGGTCAGGGGCAATGCA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGGTGAGAGTCTCAGGAGGGGACTTACTAGGTCAGGGGCAATGCA  996

seq1  TATTTTGAAGTTTCTTGACACACACTGCCAAACAGCTTTCCAGAAAGCCT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAAGTTTCTTGACACACACTGCCAAACAGCTTTCCAGAAAGCCT  1046

seq1  TGCCCAATTTGTTCACCCACCTGCAGTGCATCTTGTTTTAATTTGTAAAG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAATTTGTTCACCCACCTGCAGTGCATCTTGTTTTAATTTGTAAAG  1096

seq1  TCTGTGGCTACTTAACATGGGAACATTAGTTTTATTTGAAGAAAGGGAAT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCTACTTAACATGGGAACATTAGTTTTATTTGAAGAAAGGGAAT  1146

seq1  TC  1136
      ||
seq2  TC  1148


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