MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-267F18
Chromosome	X (Build37)
Map Location	113,499,981 - 113,500,184
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC623913, LOC546363, LOC100039277
Downstream gene	Cpxcr1, EG624153, LOC100039300, EG665045, LOC100039319
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC623913 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623913
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 Proteins pseudo : _no_value

name	LOC546363 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 94 ESTs, 18 Proteins pseudo : _no_value

name	LOC100039277 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039277
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Cpxcr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382239 MGI:2685989
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG624153 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:624153 MGI:3644980
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	LOC100039300 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039300
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 1 Protein

name	EG665045 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665045 MGI:3645337
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	LOC100039319 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	LOC100039277 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272141 GeneID:100039277
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : similar to H2A-Bbd transcript_id : XM_001472598.1

name	Cpxcr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802443 GeneID:382239 MGI:2685989
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CPX chromosome region, candidate 1 transcript_id : NM_001033471.2

name	EG624153 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83003484 GeneID:624153 MGI:3644980
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG624153 transcript_id : XM_888672.1

name	LOC100039300 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272143 GeneID:100039300
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 1 Protein product : similar to enhancer of yellow 2 homolog (Drosophila) transcript_id : XM_001472631.1

name	EG665045 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149272145 GeneID:665045 MGI:3645337
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG665045 transcript_id : XM_974153.2

name	LOC100039319 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272147 GeneID:100039319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : similar to H2A histone family, member B3 transcript_id : XM_001472670.1

name	LOC100039277 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272142 GeneID:100039277
definition	codon_start : 1 product : similar to H2A-Bbd protein_id : XP_001472648.1

name	Cpxcr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701999 CCDS:CCDS30367.1 GeneID:382239 MGI:2685989
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC382239 protein_id : NP_001028643.1

name	EG624153 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83003485 GeneID:624153 MGI:3644980
definition	codon_start : 1 product : similar to H2A-Bbd protein_id : XP_893765.1

name	LOC100039300 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272144 GeneID:100039300
definition	codon_start : 1 product : similar to enhancer of yellow 2 homolog (Drosophila) protein_id : XP_001472681.1

name	EG665045 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149272146 GeneID:665045 MGI:3645337
definition	codon_start : 1 product : hypothetical protein protein_id : XP_979247.2

name	LOC100039319 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272148 GeneID:100039319
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472720.1

name	LOC623913 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623913
definition	number : 1 pseudo : _no_value

name	LOC546363 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:546363
definition	number : 1 pseudo : _no_value

clone name	MSMg01-171K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188E13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-083K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279P02
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-267F18.b
ACC	GA070503
length	252
definition	B6Ng01-267F18.b
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gattccataaattctttgttttttttttctaaatatgcaaacttcttttc ttcaattacatttccaatgctatcctttatagaaaagccccactccccta tgcacccattcccattttttggccctggcattcccctgtactggggcata taatgtttgcctgaccaatgggcctctctttccagtgatggccgactaag tcatcttttgatacatatgcatctagagtcaacagctctggggtactggt ta
quality values	Open. Hide. 16 24 6 9 9 16 16 31 27 22 14 28 17 17 12 31 23 15 17 25 27 30 19 15 20 16 28 27 21 7 6 5 4 4 4 5 5 4 4 5 6 6 7 9 6 10 12 10 6 9 28 27 22 15 27 25 15 17 17 18 25 33 22 27 22 10 17 22 32 17 30 28 33 11 5 5 5 4 7 5 10 7 7 5 6 5 7 8 10 11 10 16 19 24 22 30 29 13 16 17 30 13 14 18 19 18 12 14 13 19 9 12 30 12 14 18 13 13 13 23 23 23 23 18 23 16 18 18 14 34 36 27 27 23 23 27 36 16 18 13 16 16 26 25 34 36 30 10 18 16 11 17 25 19 34 10 18 18 18 22 13 10 22 29 16 19 15 18 10 29 17 25 26 34 16 13 10 10 26 23 34 41 27 27 11 14 14 21 12 11 5 7 18 18 27 11 13 14 9 16 10 17 27 18 28 19 27 22 27 24 30 36 21 23 27 38 15 12 23 21 10 7 18 27 23 13 28 12 23 18 13 18 9 31 13 26 25 27 18 25 27 27 27 18 30 28 19 28 15 9 12 23

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_113499981_113500184
seq2: B6Ng01-267F18.b_91_287 (reverse)

seq1  TAACCAGTACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGAT  50
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  TAACCAGTACCCCAGAGCTGTTGACTCTAGATGCATATGTATCAAAAGAT  50

seq1  GGCCTAATCAGCCATCACTGGAAAAAGAGGCCCATTGGACATGCAAACTT  100
      | | || || |||||||||||||| ||||||||||||| || |||||| |
seq2  GACTTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGTCAGGCAAACAT  100

seq1  TATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAGTGGGAGTGGGTG  150
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  TATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAATGGGAATGGGTG  150

seq1  GGTAGGGGAGTGGGGGGGGTATGGGGGACTTTT------GGGATAGCATT  194
        |||||||||||||             |||||       ||||||||||
seq2  CATAGGGGAGTGGGG-------------CTTTTCTATAAAGGATAGCATT  187

seq1  GGAAATGTAA  204
      ||||||||||
seq2  GGAAATGTAA  197

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information