BAC Information

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BAC

Clone NameB6Ng01-267J24
ChromosomeX (Build37)
Map Location 54,069,680 - 54,090,762
singlet/doubletdoublet
Overlap geneMtap7d3
Upstream geneEG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1
Downstream geneGpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6, Rbmx, Snord61, Gm364, Gpr101, Aldoa-ps, EG666441, LOC666447
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267J24.bB6Ng01-267J24.g
ACCGA070695GA070696
length1,0531,080
definitionB6Ng01-267J24.b B6Ng01-267J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,069,680 - 54,070,727)(54,089,690 - 54,090,762)
sequence
gaattcctttagcctttctttatcttgcaatggctctggttccctttctt
ttttcttttcttttctttcttttttttttttttttttttgagacaaggtt
tcttgtgtagccaggattgtcctggaactcactctgtagaccaggctggc
ctcgaactcagaaatctgcctgtctctgcctcccaagtgctgggattaaa
ggcgtgcgccaccacgcccggctctggttccctttctgtctgcactgact
tttgcttctgttcattctttcttctctctcaagttcctcttttatcacac
tggaactgtcttagacagatgttgtccaccagagacccttactcactctg
tactgtttcctaattaatgtttgttgcttcttaaactgttcttaatggtt
cgtactctctcagggagccacaagatcaggtaaattaggaaaaatcagcc
tgcgatggaaactgtcagagaggtagggtgctgtgtttggagtctttgca
caggtggtagataatagtcctgagctaaacccaaaccaaaatacattgag
ggttgcattctgaaggctaatggggttcagtgtctggaccttcaacttcc
tcttttctccctgaagttagtgtttaaggacttattctgaaggtaaggaa
aatggaagaaaatagcaagaggtgagattattcccttcctttctacaggg
tcagtaaacacagaaaagaactaaacaactatgtgacaccaacactaaat
ggaaagactctaatatggcatactgtatcttctgcctgcttctgttttct
tttttcttctgcagatgcttgtcgtcgctgggtcttttctttttgttcct
tcagtttacggtgtttttcttccaattgctttttcatactgcagcttcgc
cttctgttctttctcagcagttgttttttccttgttggctgaatgttcca
agcaccattttcatggtgttaagccaaatttttttttcacaattacatac
ataaaaaggcaaaaatgtttactttgtccttctttatcattcttaggaca
aca
gaattcctaatcactgtagctaaattaaatccaagtgatgggtttaattg
ttttatttttatttagttattatttttattttattatttattatttattt
tatttatcttttcatatttatcatttaattatttattttatttattattt
aattatttgatttttattttatttaatggactttacatttacaaaatgcc
tacacatttttatgcaaggtttgtttacactttacaaggcatcttggtgg
ttttctttctttttttttttttaaagatttatttattggttatatgtaag
tacactgtagctgtcttcagacactccagaaaagggagtcagatctcatt
acggatggttgtaagccaccatgtggttgctgggatttgaactccggacc
ttcggaagagcagtcgggtgctcttacccactgagccatctcaccagccc
ggttttcttttttttatcttatttgatacttcaaacattatgcagatagt
atgatgaatagtcagtcatcatcccatgagaacagaacaaatcggagcta
ggaaccacagtaatggctgccatcccatcccccaagaggcagaggcagga
tgttcacgtgagcctaagagtgtggagccaaactgagcagcacaggaata
ctatggctcaaaaacaaagcaagaccaaaacagagagaacaaaggttcta
gagtagacaatttaaatttatatcatagaaaagatacatttgagctatgt
gactctgggcattttaattttctttcctttctccctcttaatttttcttt
tatttagtaatatcatgagggtgaagttcgggggagggatgtatgtgcac
gtgtatgcaccactaccccaggtggtggattgtcatggcttcagcatgga
aggtcagaagaatcacgttctattatgtcttctactgcatattccagcaa
tgagctcttggtaggttggtcaaggcaggcacttttaccatttagcttgg
tctaaatttgataaccctttctaacctcagtctcctgcctcccataaaaa
ttgtacaaaagacattcaagcccaaggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_54069680_54070727
seq2: B6Ng01-267J24.b_46_1098

seq1  GAATTCCTTTAGCCTTTCTTTATCTTGCAATGGCTCTGGTTCCCTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAGCCTTTCTTTATCTTGCAATGGCTCTGGTTCCCTTTCTT  50

seq1  TTTTCTTTTCTTTTCTTTCTTTTTTTTTTTTTTTTTTTTGAGACAAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTCTTTCTTTTTTTTTTTTTTTTTTTTGAGACAAGGTT  100

seq1  TCTTGTGTAGCCAGGATTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTAGCCAGGATTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC  150

seq1  CTCGAACTCAGAAATCTGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAACTCAGAAATCTGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAA  200

seq1  GGCGTGCGCCACCACGCCCGGCTCTGGTTCCCTTTCTGTCTGCACTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGCGCCACCACGCCCGGCTCTGGTTCCCTTTCTGTCTGCACTGACT  250

seq1  TTTGCTTCTGTTCATTCTTTCTTCTCTCTCAAGTTCCTCTTTTATCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTGTTCATTCTTTCTTCTCTCTCAAGTTCCTCTTTTATCACAC  300

seq1  TGGAACTGTCTTAGACAGATGTTGTCCACCAGAGACCCTTACTCACTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGTCTTAGACAGATGTTGTCCACCAGAGACCCTTACTCACTCTG  350

seq1  TACTGTTTCCTAATTAATGTTTGTTGCTTCTTAAACTGTTCTTAATGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTCCTAATTAATGTTTGTTGCTTCTTAAACTGTTCTTAATGGTT  400

seq1  CGTACTCTCTCAGGGAGCCACAAGATCAGGTAAATTAGGAAAAATCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTCTCTCAGGGAGCCACAAGATCAGGTAAATTAGGAAAAATCAGCC  450

seq1  TGCGATGGAAACTGTCAGAGAGGTAGGGTGCTGTGTTTGGAGTCTTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATGGAAACTGTCAGAGAGGTAGGGTGCTGTGTTTGGAGTCTTTGCA  500

seq1  CAGGTGGTAGATAATAGTCCTGAGCTAAACCCAAACCAAAATACATTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTAGATAATAGTCCTGAGCTAAACCCAAACCAAAATACATTGAG  550

seq1  GGTTGCATTCTGAAGGCTAATGGGGTTCAGTGTCTGGACCTTCAACTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCATTCTGAAGGCTAATGGGGTTCAGTGTCTGGACCTTCAACTTCC  600

seq1  TCTTTTCTCCCTGAAGTTAGTGTTTAAGGACTTATCCTGAAGGTAAGGAA  650
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTTTTCTCCCTGAAGTTAGTGTTTAAGGACTTATTCTGAAGGTAAGGAA  650

seq1  AATGGAAGAAAATAGCAAGAGGTGAGATTATTCCCTTCCTTTCTACAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGAAAATAGCAAGAGGTGAGATTATTCCCTTCCTTTCTACAGGG  700

seq1  TCAGTAAACACAGAAAAGAACTAAACAACTATGTGACACCAACACTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAACACAGAAAAGAACTAAACAACTATGTGACACCAACACTAAAT  750

seq1  GGAAAGACTCTAATATGGCATACTGTATCTTCTGCCTGCTTCTGTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACTCTAATATGGCATACTGTATCTTCTGCCTGCTTCTGTTTTCT  800

seq1  TTTTTCTTCTGCAGATGCTTGTCGTCGCTGGTCCTTTTCTTTTTGTTCCT  850
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  TTTTTCTTCTGCAGATGCTTGTCGTCGCTGGGTCTTTTCTTTTTGTTCCT  850

seq1  TCAGTTTACGGTGTTTTTCTTCCAATTGC-TTTTCATACTGCAGCTTCGC  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCAGTTTACGGTGTTTTTCTTCCAATTGCTTTTTCATACTGCAGCTTCGC  900

seq1  CTTCTGTTCTTTCTCAAGCAGTTG-TTTTTCCTTGTTGGCTGAAATGTTC  948
      ||||||||||||||| |||||||| ||||||||||||||||| |||||||
seq2  CTTCTGTTCTTTCTC-AGCAGTTGTTTTTTCCTTGTTGGCTG-AATGTTC  948

seq1  CAAGCA-CATTTTCATGGTGTTAAAGCCAAATTTTTTTTCCAC-ATTACA  996
      |||||| ||||||||||||||| |||||||||||||||| ||| ||||||
seq2  CAAGCACCATTTTCATGGTGTT-AAGCCAAATTTTTTTTTCACAATTACA  997

seq1  TACAT-AAAAGGGAAAAATG-TTACTTTGTC--TCCTTATCATTCTTAAG  1042
      ||||| |||||| ||||||| ||||||||||  || |||||||||||| |
seq2  TACATAAAAAGGCAAAAATGTTTACTTTGTCCTTCTTTATCATTCTTAGG  1047

seq1  ACAACA  1048
      ||||||
seq2  ACAACA  1053

seq1: chrX_54089690_54090762
seq2: B6Ng01-267J24.g_66_1144 (reverse)

seq1  AACCTTGGGC-TAAATGCTTTTTGTCCCATTTTTATGG--AGCAGGAAAC  47
      |||||||||| | ||||  |||||| | ||||||||||   |||||| ||
seq2  AACCTTGGGCTTGAATGTCTTTTGTACAATTTTTATGGGAGGCAGGAGAC  50

seq1  TGAGGCTTAGAAAGG--TATTCAATTTAGACCAGCTTAATTGGTAAAAGT  95
      ||||| |||||||||  |||  |||||||||||   ||| ||||||||||
seq2  TGAGG-TTAGAAAGGGTTATCAAATTTAGACCAAGCTAAATGGTAAAAGT  99

seq1  GCCTGCCTTG-CCAACCTTACAATGAGCTCATTGCCTGGAATATGCAGTA  144
      |||||||||| |||||| ||| | |||||||||| |||||||||||||||
seq2  GCCTGCCTTGACCAACC-TACCAAGAGCTCATTG-CTGGAATATGCAGTA  147

seq1  GAAGGACATAATAGAACGTGATTC-TCTGACC-TCCATGCTGAAGCCATG  192
      ||| |||||||||||||||||||| ||||||| |||||||||||||||||
seq2  GAA-GACATAATAGAACGTGATTCTTCTGACCTTCCATGCTGAAGCCATG  196

seq1  AC-ATTCACCACCTGTGCTAGT-GTGCATACACGTGCACATACATCCCTC  240
      || || ||||||||| | |||| |||||||||||||||||||||||||||
seq2  ACAATCCACCACCTGGGGTAGTGGTGCATACACGTGCACATACATCCCTC  246

seq1  CCCCGAACTTCACCCTCATGATATTACTAAATAAAAGAAAAATTAAGAGG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAACTTCACCCTCATGATATTACTAAATAAAAGAAAAATTAAGAGG  296

seq1  GAGAAAGGAAAGAAAATTAAAATGCCCAGAGTCACATAGCTCAAATGTAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGAAAGAAAATTAAAATGCCCAGAGTCACATAGCTCAAATGTAT  346

seq1  CTTTTCTATGATATAAATTTAAATTGTCTACTCTAGAACCTTTGTTCTCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTATGATATAAATTTAAATTGTCTACTCTAGAACCTTTGTTCTCT  396

seq1  CTGTTTTGGTCTTGCTTTGTTTTTGAGCCATAGTATTCCTGTGCTGCTCA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGGTCTTGCTTTGTTTTTGAGCCATAGTATTCCTGTGCTGCTCA  446

seq1  GTTTGGCTCCACACTCTTAGGCTCACGTGAACATCCTGCCTCTGCCTCTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCTCCACACTCTTAGGCTCACGTGAACATCCTGCCTCTGCCTCTT  496

seq1  GGGGGATGGGATGGCAGCCATTACTGTGGTTCCTAGCTCCGATTTGTTCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATGGGATGGCAGCCATTACTGTGGTTCCTAGCTCCGATTTGTTCT  546

seq1  GTTCTCATGGGATGATGACTGACTATTCATCATACTATCTGCATAATGTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATGGGATGATGACTGACTATTCATCATACTATCTGCATAATGTT  596

seq1  TGAAGTATCAAATAAGATAAAAAAAAGAAAACCGGGCTGGTGAGATGGCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTATCAAATAAGATAAAAAAAAGAAAACCGGGCTGGTGAGATGGCT  646

seq1  CAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATC  696

seq1  CCAGCAACCACATGGTGGCTTACAACCATCCGTAATGAGATCTGACTCCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACCACATGGTGGCTTACAACCATCCGTAATGAGATCTGACTCCC  746

seq1  TTTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAACCAATA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAACCAATA  796

seq1  AATAAATCTTTAAAAAAAAAAAAAGAAAGAAAACCACCAAGATGCCTTGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTTTAAAAAAAAAAAAAGAAAGAAAACCACCAAGATGCCTTGT  846

seq1  AAAGTGTAAACAAACCTTGCATAAAAATGTGTAGGCATTTTGTAAATGTA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTAAACAAACCTTGCATAAAAATGTGTAGGCATTTTGTAAATGTA  896

seq1  AAGTCCATTAAATAAAATAAAAATCAAATAATTAAATAATAAATAAAATA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATTAAATAAAATAAAAATCAAATAATTAAATAATAAATAAAATA  946

seq1  AATAATTAAATGATAAATATGAAAAGATAAATAAAATAAATAATAAATAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAAATGATAAATATGAAAAGATAAATAAAATAAATAATAAATAA  996

seq1  TAAAATAAAAATAATAACTAAATAAAAATAAAACAATTAAACCCATCACT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAAATAATAACTAAATAAAAATAAAACAATTAAACCCATCACT  1046

seq1  TGGATTTAATTTAGCTACAGTGATTAGGAATTC  1073
      |||||||||||||||||||||||||||||||||
seq2  TGGATTTAATTTAGCTACAGTGATTAGGAATTC  1079