BAC Information

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BAC

Clone NameB6Ng01-268B04
ChromosomeX (Build37)10 (Build37)
Map Location 140,555,250 - 140,555,778111,560,044 - 111,561,151
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC209541, Chrdl1, Pak3, Capn6, Dcx
Downstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268B04.bB6Ng01-268B04.g
ACCGA071031GA071032
length1,0941,110
definitionB6Ng01-268B04.b B6Ng01-268B04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,555,250 - 140,555,778)(111,560,044 - 111,561,151)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagtacaagccattgctgtt
ctgttcaggaattttttcccctgtgcccatatcttcaaggcttttcccca
ctttctcctctataagtttcagtgtctctggttttatgtgaagttccttg
atccacttagatttgaccttagtacaaggagataagtatggatcgattcg
cattcttctacacgataacaaccagttgtgccagcaccaattgttgaaaa
tgctgtcttttttccactggatggttttagctcccttgtcgaagatcaag
tgaccataggtgtgtgcgttcatttctgggttttcaattctattccattg
gtctacttgtctctctctataccagtaccatgcagtttttatcacaagtg
ctctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctt
ttatctttgagaagactttttgctatcctaggttttttgttattccagat
gaatttgcaaattgctccttctaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgtcgatcctgccaatcccatgagcatgggagatctttccgtc
ttctgagatcttctttaattttctttcttcagagattttgaagtttttat
catacagatcttttcacttccttagttagagtcacgccaagatattttta
tattatttgtgactattgagaagggtgttgtttccctaatttctttctca
gcctgttaattctttgtataggagaaagggcattgacttggtttgaagtt
tattttatatccagctactttcaccggaagcttgtttattcagg

gaattcaaggccagccatatatagcaaggtcctgtcgcaaacaaagtcac
gttgtgagcaataaaagtagccaaccaaatttcagttctaaacatcaatg
cctgtagcaggaaatgttaaaaaaatatctaactggcacattcccaccct
agtggcatcaactctgccagaacagctttgccggccatgcactggccgac
ctgtttttaatgtgctggagactgactcagaactccacaatctctccacc
cagccctctaggttcccacttgcggctgccaccgccttaagaaaaacaat
acagacttagttcagaaacaatggcaactcaatctctgggcacaactgaa
acctaatcttgtaaaccttattaaaatctgattcctccgaaggcagatcc
ctggaaactgtagcagctacatcttatccatctctgtccccattccaaaa
agaacctaactctctcctgtttcctctcttcctccacccaacctggaagt
cccgcctacttgctcagtgattggctcctttattcattaagggattggtt
tacaagatcagcaccaggcctatccacaacaaatgcctttgagagcctta
gtgaattcttgcttgaaacaaaaaccaaagccatggttgcaggtcgcttg
ctctcatgtggtggccttcagcatatcctcaggcacagcgatttccaaca
acttggccatcgggtatctttcttcaagaaagattcaagaactacaggaa
aaggcaagaagtgtcattgcaaatcccataaactcatcttggtgctgggt
tcagaagtggtggggcctcctggagtcagacttcttgctgaggccaaaac
caggttaccaagaggaagcagcctgactgctgggcagggcatttcactgc
aggcctgcagaagctgagaacctctcctgcagaactggatgctccagact
caggaaggaggaaaaagggaaagaagttatgatcagcacctgtgagatcc
attttgagctcagtgctgactttagcctgaatctgttgttgaacctgtaa
gaataagtaccagttcctgaacccgccccttttcattcttttaacgggtc
tttgcttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_140555250_140555778
seq2: B6Ng01-268B04.b_601_1141 (reverse)

seq1  CCTG-ATAAAC-AGCTT-CGGTG-AAGTAGCTGGATATAAAATAAAC-TC  45
      |||| |||||| ||||| ||||| ||||||||||||||||||||||| ||
seq2  CCTGAATAAACAAGCTTCCGGTGAAAGTAGCTGGATATAAAATAAACTTC  50

seq1  AAA-CAAGTCAATGGCCTTTCT-CTATACAAAGAATAAACAGGCTGAGAA  93
      ||| |||||||||| ||||||| ||||||||||||| |||||||||||||
seq2  AAACCAAGTCAATGCCCTTTCTCCTATACAAAGAATTAACAGGCTGAGAA  100

seq1  AGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATAT-AAAA  142
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAAA  150

seq1  TATCTTGGCGTGACTCTAACTAAGGAGGTG-AAAGATCTGTATGATAAAA  191
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  TATCTTGGCGTGACTCTAACTAAGGAAGTGAAAAGATCTGTATGATAAAA  200

seq1  ACTTC-AAATCTCTGAAGAAAG-AAATTAAAGAAGATCTCAGAAGATGGA  239
      ||||| |||||||||||||||| ||||||||||||||||||||||| |||
seq2  ACTTCAAAATCTCTGAAGAAAGAAAATTAAAGAAGATCTCAGAAGACGGA  250

seq1  AAGATCTCCCATGCTCAT-GGATTGGCAGGATCAACATTGTAAAAATGGC  288
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  AAGATCTCCCATGCTCATGGGATTGGCAGGATCGACATTGTAAAAATGGC  300

seq1  TATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTC  350

seq1  CAACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGG  388
      |||||||||||||||||||||| ||||||||||||||||||||  |||||
seq2  CAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGG  400

seq1  AATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAAC  438
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAAGATAAAAGAAC  450

seq1  TTCTGGCGGAATCACCATGCCAGACCTAAAGCTTTACTACAGAGCAATTG  488
       ||||| |||||||||||||| |||||||||||||||||||||||| |||
seq2  CTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCACTTG  500

seq1  TGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTA  529
      ||||||||||||||||||||||||||||||| |||||||||
seq2  TGATAAAAACTGCATGGTACTGGTATAGAGAGAGACAAGTA  541


seq1: chr10_111560044_111561151
seq2: B6Ng01-268B04.g_66_1175 (reverse)

seq1  AATAAGC-AAGACCCG-TAAAAGATGGAACAGGGGCGGG-TCAGGAACTG  47
      ||||||| |||||||| |||||||  ||| ||||||||| ||||||||||
seq2  AATAAGCAAAGACCCGTTAAAAGAATGAAAAGGGGCGGGTTCAGGAACTG  50

seq1  GTACTTAT--CTACAGGTTCCAACAACCAGATTCAGGCTAAAGTCAGCCA  95
      ||||||||   |||||||| |||||| |||||||||||||||||||| ||
seq2  GTACTTATTCTTACAGGTT-CAACAA-CAGATTCAGGCTAAAGTCAG-CA  97

seq1  CTGAGCTCAAAATGGATCCTCACAGGTGCTGATCATAAC-TCTTTCCCTT  144
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  CTGAGCTCAAAATGGAT-CTCACAGGTGCTGATCATAACTTCTTTCCCTT  146

seq1  TCTCCTCCTTCCTGAGTCTGGAGCATCCAGTTCTGCAGGAGAGGTTCTCA  194
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTTCCTGAGTCTGGAGCATCCAGTTCTGCAGGAGAGGTTCTCA  196

seq1  GCTTCTGCAGGCCTGCAGTGAAATGCCCTGCCCAGCAGTCAGGCTGCTTC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCAGGCCTGCAGTGAAATGCCCTGCCCAGCAGTCAGGCTGCTTC  246

seq1  CTCTTGGTAACCTGGTTTTGGCCTCAGCAAGAAGTCTGACTCCAGGAGGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTAACCTGGTTTTGGCCTCAGCAAGAAGTCTGACTCCAGGAGGC  296

seq1  CCCACCACTTCTGAACCCAGCACCAAGATGAGTTTATGGGATTTGCAATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACTTCTGAACCCAGCACCAAGATGAGTTTATGGGATTTGCAATG  346

seq1  ACACTTCTTGCCTTTTCCTGTAGTTCTTGAATCTTTCTTGAAGAAAGATA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTTGCCTTTTCCTGTAGTTCTTGAATCTTTCTTGAAGAAAGATA  396

seq1  CCCGATGGCCAAGTTGTTGGAAATCGCTGTGCCTGAGGATATGCTGAAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATGGCCAAGTTGTTGGAAATCGCTGTGCCTGAGGATATGCTGAAGG  446

seq1  CCACCACATGAGAGCAAGCGACCTGCAACCATGGCTTTGGTTTTTGTTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACATGAGAGCAAGCGACCTGCAACCATGGCTTTGGTTTTTGTTTC  496

seq1  AAGCAAGAATTCACTAAGGCTCTCAAAGGCATTTGTTGTGGATAGGCCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAATTCACTAAGGCTCTCAAAGGCATTTGTTGTGGATAGGCCTG  546

seq1  GTGCTGATCTTGTAAACCAATCCCTTAATGAATAAAGGAGCCAATCACTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGATCTTGTAAACCAATCCCTTAATGAATAAAGGAGCCAATCACTG  596

seq1  AGCAAGTAGGCGGGACTTCCAGGTTGGGTGGAGGAAGAGAGGAAACAGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTAGGCGGGACTTCCAGGTTGGGTGGAGGAAGAGAGGAAACAGGA  646

seq1  GAGAGTTAGGTTCTTTTTGGAATGGGGACAGAGATGGATAAGATGTAGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTAGGTTCTTTTTGGAATGGGGACAGAGATGGATAAGATGTAGCT  696

seq1  GCTACAGTTTCCAGGGATCTGCCTTCGGAGGAATCAGATTTTAATAAGGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTTTCCAGGGATCTGCCTTCGGAGGAATCAGATTTTAATAAGGT  746

seq1  TTACAAGATTAGGTTTCAGTTGTGCCCAGAGATTGAGTTGCCATTGTTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGATTAGGTTTCAGTTGTGCCCAGAGATTGAGTTGCCATTGTTTC  796

seq1  TGAACTAAGTCTGTATTGTTTTTCTTAAGGCGGTGGCAGCCGCAAGTGGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAAGTCTGTATTGTTTTTCTTAAGGCGGTGGCAGCCGCAAGTGGG  846

seq1  AACCTAGAGGGCTGGGTGGAGAGATTGTGGAGTTCTGAGTCAGTCTCCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGAGGGCTGGGTGGAGAGATTGTGGAGTTCTGAGTCAGTCTCCAG  896

seq1  CACATTAAAAACAGGTCGGCCAGTGCATGGCCGGCAAAGCTGTTCTGGCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAAAACAGGTCGGCCAGTGCATGGCCGGCAAAGCTGTTCTGGCA  946

seq1  GAGTTGATGCCACTAGGGTGGGAATGTGCCAGTTAGATATTTTTTTAACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGATGCCACTAGGGTGGGAATGTGCCAGTTAGATATTTTTTTAACA  996

seq1  TTTCCTGCTACAGGCATTGATGTTTAGAACTGAAATTTGGTTGGCTACTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCTACAGGCATTGATGTTTAGAACTGAAATTTGGTTGGCTACTT  1046

seq1  TTATTGCTCACAACGTGACTTTGTTTGCGACAGGACCTTGCTATATATGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCTCACAACGTGACTTTGTTTGCGACAGGACCTTGCTATATATGG  1096

seq1  CTGGCCTTGAATTC  1108
      ||||||||||||||
seq2  CTGGCCTTGAATTC  1110


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