BAC Information

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BAC

Clone NameB6Ng01-273J12
ChromosomeX (Build37)
Map Location 152,296,709 - 152,297,848
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394, Ptchd1
Downstream gene4930503H13Rik, LOC640803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273J12.bB6Ng01-273J12.g
ACCGA075128GA075129
length1,2471,143
definitionB6Ng01-273J12.b B6Ng01-273J12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgagcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagatgag
gcattctgtcagtccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctggggctcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagtggaagcccatgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgattgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcagctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcagtgtataatcgtacatctggccatttcttcttgcaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtcccagaaaggggttgtaatgctgcagctgt
ccacttctgggtggtgcctgcataacgtgcagagccatcagtaaaccagg
ctctagtcttctcctcttcggtcagttgatcatagggaacaccccatgag
gctataggtgcatgcttggcagcagatggcattgtaacaggagtagaaac
cataggcatttgagcaacttcttcatgtaacttgcttgtgccttcaggac
ctgctctgggcccgatcacgtattataaccactttcaattgaataataag
aactgctgctgtgcacgttcccaccttaatgaccttgcagggtcctgaat
agtaacccaggctcatgatggtaaattcaagttcggcatagtgacttggg
tgtgttccttaattggttgcgaagcagcacgttgtcactcgtagcat
gaattccagttactgaatcttatggatatcctggcaggttgatttttgtt
ctggttcagaggtatcaaaacttagtaagactattaattattttctcctt
tgccaggtagcacagtatttactggtactgtagaaactagaccacaacat
tcttcatataagtaggaaagaatctcatattgaaccagaaataactccaa
ctatacaaagtgatccacaacaaaacgaatgatactggagggattgtcat
tccagagttcaagatattttcagatgtatggcaataaaaacaatatggta
ctggaaataaaccagacatgtagaacagagaaacaaattgagcacactac
caaaaacaatttatagtttatactgtatttagtggagactgctcttctgg
tactaccagttgcagttaatagactcatcacacagaccttggatagccta
gaattccaggaatcatctgtgatattatatctcttccaaacttaccatat
gccctatgtgttttcattcttctgttcattgaagtattgcatatcccctt
ctatgcaaagtgtgtcctaatagacaacattatttattacggactataaa
ttgtacttcctaagtaccattgttgttcctattttcatcactctgattct
cctttttaatataccaaatatatacttcttttggggttatttggttataa
caaaaaacttggtttgagataattaatacaagagaaaatttattaggaaa
atgtggaataatatcagattgaaaagctaactcagagacaaaaggtagaa
aggtactctgtatagtattaggattggaggcagtgaccatctacagaata
tggaatggaaaaactaggtaggattcatattagaaatggtctgttataga
tatgttttcttaatttgttcagtcatgaatgtaatgtacaatataaaata
cctttgaaatgaataatgctaattacagggagatgtggaaacagggcata
aacaggtttggaagcaatacaaaattgattttagtcttgtctgaatatct
tgaatcctagtgctcttgatcaggacagtagcctgatatatattcctgat
tctcatccttaaatacctgcaatgaacagtgcctgaattggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_152296709_152297848
seq2: B6Ng01-273J12.g_63_1205

seq1  GAATTCCAGTTACTGAATCTTATGGATATCCTGGCAGGTTGATTTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTACTGAATCTTATGGATATCCTGGCAGGTTGATTTTTGTT  50

seq1  CTGGTTCAGAGGTATCAAAACTTAGTAAGACTATTAATTATTTTCTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCAGAGGTATCAAAACTTAGTAAGACTATTAATTATTTTCTCCTT  100

seq1  TGCCAGGTAGCACAGTATTTACTGGTACTGTAGAAACTAGACCACAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGTAGCACAGTATTTACTGGTACTGTAGAAACTAGACCACAACAT  150

seq1  TCTTCATATAAGTAGGAAAGAATCTCATATTGAACCAGAAATAACTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATATAAGTAGGAAAGAATCTCATATTGAACCAGAAATAACTCCAA  200

seq1  CTATACAAAGTGATCCACAACAAAACGAATGATACTGGAGGGATTGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAAAGTGATCCACAACAAAACGAATGATACTGGAGGGATTGTCAT  250

seq1  TCCAGAGTTCAAGATATTTTCAGATGTATGGCAATAAAAACAATATGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTTCAAGATATTTTCAGATGTATGGCAATAAAAACAATATGGTA  300

seq1  CTGGAAATAAACCAGACATGTAGAACAGAGAAACAAATTGAGCACACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATAAACCAGACATGTAGAACAGAGAAACAAATTGAGCACACTAC  350

seq1  CAAAAACAATTTATAGTTTATACTGTATTTAGTGGAGACTGCTCTTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAATTTATAGTTTATACTGTATTTAGTGGAGACTGCTCTTCTGG  400

seq1  TACTACCAGTTGCAGTTAATAGACTCATCACACAGACCTTGGATAGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCAGTTGCAGTTAATAGACTCATCACACAGACCTTGGATAGCCTA  450

seq1  GAATTCCAGGAATCATCTGTGATATTATATCTCTTCCAAACTTACCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAATCATCTGTGATATTATATCTCTTCCAAACTTACCATAT  500

seq1  GCCCTATGTGTTTTCATTCTTCTGTTCATTGAAGTATTGCATATCCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATGTGTTTTCATTCTTCTGTTCATTGAAGTATTGCATATCCCCTT  550

seq1  CTATGCAAAGTGTGTCCTAATAGACAACATTATTTATTACGGACTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAAAGTGTGTCCTAATAGACAACATTATTTATTACGGACTATAAA  600

seq1  TTGTACTTCCTAAGTACCATTGTTGTTCCTATTTTCATCACTCTGATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTCCTAAGTACCATTGTTGTTCCTATTTTCATCACTCTGATTCT  650

seq1  CCTTTTTAATATACCAAATATATACTTCTTTTGGGGTTATTTGGTTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTAATATACCAAATATATACTTCTTTTGGGGTTATTTGGTTATAA  700

seq1  CAAAAAACTTGGTTTGAGATAATTAATACAAGAGAAAATTTATTAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACTTGGTTTGAGATAATTAATACAAGAGAAAATTTATTAGGAAA  750

seq1  ATGTGGAATAATATCAGATTGAAAAGCTAACTCAGAGACAAAAGGTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAATAATATCAGATTGAAAAGCTAACTCAGAGACAAAAGGTAGAA  800

seq1  AGGTACTCTGTATAGTATTAGGATTGGAGGCAGTGACCATCTACAGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTCTGTATAGTATTAGGATTGGAGGCAGTGACCATCTACAGAATA  850

seq1  TGGAATGGAAAAACTAGGTAGGATTCATATTAGAAATGGTCTGTTATAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGAAAAACTAGGTAGGATTCATATTAGAAATGGTCTGTTATAGA  900

seq1  TATGTTTTCTTAATTTGTTCAGTCATGAATGTAATGTACAATATAAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTCTTAATTTGTTCAGTCATGAATGTAATGTACAATATAAAATA  950

seq1  CCTTTGAAAATGATAATGCTAATTACAGGGAGATGTGGAAACAGGGCATA  1000
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAAATGAATAATGCTAATTACAGGGAGATGTGGAAACAGGGCATA  1000

seq1  AACAGGGTTGGAAGCAATACAAAATTGATTTTAGTCTTGTCTG-ATATCT  1049
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  AACAGGTTTGGAAGCAATACAAAATTGATTTTAGTCTTGTCTGAATATCT  1050

seq1  TG-ATCCTAGTGCTCTTGAATCAGAACAAGTTAGCTG--ATATATTCCTG  1096
      || ||||||||||||||| ||||| || |||   |||  |||||||||||
seq2  TGAATCCTAGTGCTCTTG-ATCAGGAC-AGTAGCCTGATATATATTCCTG  1098

seq1  AATTCCTCATTCTTAAATA-CTGC-ATG-ACAGTGCCTGATTTGGTT  1140
      |  | ||||| |||||||| |||| ||| ||||||||||| ||||||
seq2  A--TTCTCATCCTTAAATACCTGCAATGAACAGTGCCTGAATTGGTT  1143