BAC Information

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BAC

Clone NameB6Ng01-273P14
ChromosomeX (Build37)
Map Location 57,272,587 - 57,413,558
singlet/doubletdoublet
Overlap geneF9, EG434782, Mcf2
Upstream geneFgf13
Downstream geneAtp11c, LOC666517, LOC631784, LOC100039611, LOC100039621, Gm715, Hspa9-ps1, EG236831, LOC666559, LOC671636, Sox3, EG631922, Rpl7l1-ps, LOC627159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273P14.bB6Ng01-273P14.g
ACCGA075400GA075401
length1,162769
definitionB6Ng01-273P14.b B6Ng01-273P14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,272,587 - 57,273,765)(57,412,792 - 57,413,558)
sequence
gaattccaaacaacttattagcaataggcatgtccataaatgaggtctct
ctgtctctctctctgtgtctctgtctgtctgtctctctgtctctgtctct
gtctctgtctctgtctctctctctctctctctctcacacacacacacaca
cacacacacacacacacacacacaaacacacacacacacacacacattgg
gactcctgcataccctcaggccctaggaaaaccaatgagatgatctctag
gcacagactgactaactgatggggataatgaaaagggacatatgtggaaa
ggattaaagcaaaacttacttcttagaataagcacatgggctctgatcta
ctgccacatttctccaagtctgacagtatgcccagatcactaggaatttg
tcaggtacacagtctcacactccacctcaatctccctggatttgaacaac
tagagagtgaggccctgcaatctgggttcaaggaagccctgcagatcatt
ctgatactgtagtttagaaacccactgtcctaaaggacacacacagaaac
ctgtctccaaaatatcaaataatggagtcaatctatgctgtcctccaagt
gtgttcaccacagaaactgcatatacagtattacctgtgcatattgtttt
aaactaagagttagattaggagcaaaacccaagccttaactatatattta
accaaagcccaagtgattccatcagagaggagagacaggccacctcctac
ctcaatgaaaggagccagtccagaccttacataaaattggggggtcagta
catgtggatactttacttaactagtttaaaaacattaaaattttttcagt
ttctttgtcacttttgccacacttccagggaataatgggccacatgtagt
tggtcactattttactggacaaggcaggtataagagaaattttccatcat
tacatgtatttctgtagatagtacatatcatggtttactctagcttaaaa
ctcttgggtcataatataatttagtagtgatttccatgatctcacacgac
aatatttctctaataaaaatatgaacttctgatgctgaatgacactgcat
tcatcaatagctacattacgagttcaggtaagttgcatcaataccaattg
acagcactagaa
gaattcttttgggcagaatgaggatttcaggatggttctagctacacttt
tgacattgatgttgtttcttctcttgtttatcatagaaactgggctgctc
ctccagttaaaggacatcaatcatttcctaatgcaagacattgctttcct
gtctggtaagtaacctttatcatgtacttaagggaagataaatgtataaa
ctggtcagcagagttcatttgagatatgtataaatagtttgctatccata
tccatatatacacatatataaacacacatatattagattataaaatgttt
taataatcatttatatgttgtagatctagttactaaacaagcggacatta
agaataattaaggattttaacatttttaatatgtaattaagagcaatctt
aatactcttgtgcatttgtctttagacattcacagggtatgtggggaaat
atgtgtcttagaagagtgtggggtagatttattaattttttttgtctatt
cattttttaagatttttaaaaaagatttatttatttattatatgtaagta
cactgtagctgtcttcagacaccccaaaagcgggcatcagatctcattac
ggatggttgtgagccaccacgtggttgctgggattttgaactcaggacct
tcagaagagcagtcagtgctcttacccgctgagtcatctctccagcccct
tttgtctattcataagcagagcctcttttttttttttttaaaaaaattta
ttttatttatttaaaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_57272587_57273765
seq2: B6Ng01-273P14.b_42_1203

seq1  GAATTCCAAACAACTTATTAGCAATAGGCATGTCCATAAATGAGGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACAACTTATTAGCAATAGGCATGTCCATAAATGAGGTCTCT  50

seq1  CTGTCTCTCTCTCTGTGTCTCTGTCTGTCTGTCTCTCTGTCTCTGTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTCTCTGTGTCTCTGTCTGTCTGTCTCTCTGTCTCTGTCTCT  100

seq1  GTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCACACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCACACACACACACACA  150

seq1  CACACACACACACACACACACACAAACACACACACACACACACACATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACAAACACACACACACACACACACATTGG  200

seq1  GACTCCTGCATACCCTCAGGCCCTAGGAAAACCAATGAGATGATCTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTGCATACCCTCAGGCCCTAGGAAAACCAATGAGATGATCTCTAG  250

seq1  GCACAGACTGACTAACTGATGGGGATAATGAAAAGGGACATATGTGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACTGACTAACTGATGGGGATAATGAAAAGGGACATATGTGGAAA  300

seq1  GGATTAAAGCAAAACTTACTTCTTAGAATAAGCACATGGGCTCTGATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGCAAAACTTACTTCTTAGAATAAGCACATGGGCTCTGATCTA  350

seq1  CTGCCACATTTCTCCAAGTCTGACAGTATGCCCAGATCACTAGGAATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACATTTCTCCAAGTCTGACAGTATGCCCAGATCACTAGGAATTTG  400

seq1  TCAGGTACACAGTCTCACACTCCACCTCAATCTCCCTGGATTTGAACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTACACAGTCTCACACTCCACCTCAATCTCCCTGGATTTGAACAAC  450

seq1  TAGAGAGTGAGGCCCTGCAATCTGGGTTCAAGGAAGCCCTGCAGATCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGTGAGGCCCTGCAATCTGGGTTCAAGGAAGCCCTGCAGATCATT  500

seq1  CTGATACTGTAGTTTAGAAACCCACTGTCCTAAAGGACACACACAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACTGTAGTTTAGAAACCCACTGTCCTAAAGGACACACACAGAAAC  550

seq1  CTGTCTCCAAAATATCAAATAATGGAGTCAATCTATGCTGTCCTCCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCAAAATATCAAATAATGGAGTCAATCTATGCTGTCCTCCAAGT  600

seq1  GTGTTCACCACAGAAACTGCATATACAGTATTACCTGTGCATATTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCACCACAGAAACTGCATATACAGTATTACCTGTGCATATTGTTTT  650

seq1  AAACTAAGAGTTAGATTAGGAGCAAAACCCAAGCCTTAACTATATATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGAGTTAGATTAGGAGCAAAACCCAAGCCTTAACTATATATTTA  700

seq1  ACCAAAGCCCAAGTGATTCCATCAGAGAGGAGAGACAGGCCACCTCCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGCCCAAGTGATTCCATCAGAGAGGAGAGACAGGCCACCTCCTAC  750

seq1  CTCAATGAAAGGAGCCAGTCCAGACCTTACATAAAATT-GGGGGTCAGTA  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCAATGAAAGGAGCCAGTCCAGACCTTACATAAAATTGGGGGGTCAGTA  800

seq1  CATGTGGATACTTTACTTAACTAG-TTAAAAACATTAAAATTTTTTCAGT  848
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATGTGGATACTTTACTTAACTAGTTTAAAAACATTAAAATTTTTTCAGT  850

seq1  TTCTTTGTCACTTTTGCCACACTTCCAGGGAATAAT-GGCCACATGTAGT  897
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCTTTGTCACTTTTGCCACACTTCCAGGGAATAATGGGCCACATGTAGT  900

seq1  TGGTCACTATTTTACTGGACAAGGCAGGTATTAAGAGAAATTTTCCATCA  947
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGTCACTATTTTACTGGACAAGGCAGGTA-TAAGAGAAATTTTCCATCA  949

seq1  TTACATGTATTTCTGTTAGATAGTACATATCATGGTTTACTCTAGCTTAA  997
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTACATGTATTTCTG-TAGATAGTACATATCATGGTTTACTCTAGCTTAA  998

seq1  AACTCCTTGGGTCATAATTATAATTTAGTAGTGATTTCAATGATTCTTCA  1047
      |||| |||||||||||| |||||||||||||||||||| |||||   |||
seq2  AACT-CTTGGGTCATAA-TATAATTTAGTAGTGATTTCCATGAT--CTCA  1044

seq1  CACGACAATAATTTCTCTAAT-AAAATATGAACTTCTGATAGCTTAAATG  1096
      ||||||||| ||||||||||| |||||||||||||||||| || | ||||
seq2  CACGACAAT-ATTTCTCTAATAAAAATATGAACTTCTGAT-GC-TGAATG  1091

seq1  ACACTGCAATCATCAAATTAGCTACAATTTAAGGAGGTCAGGTAGATGTT  1146
      |||||||| |||||||  ||||||||   | | ||| |||||||     |
seq2  ACACTGCATTCATCAA--TAGCTACA---TTACGAGTTCAGGTA---AGT  1133

seq1  TGCATCTAAATATCACATTTAACAGCACTAGAA  1179
      ||||||  ||||   || || ||||||||||||
seq2  TGCATC--AATA--CCAATTGACAGCACTAGAA  1162

seq1: chrX_57412792_57413558
seq2: B6Ng01-273P14.g_70_838 (reverse)

seq1  TACTTACATTAAATAAAT-AAATAAATCTTTTT--AAAAAAAAAAAAGAA  47
      |||||   |||||||||| |||||||| |||||  |||||||||||||| 
seq2  TACTT---TTAAATAAATAAAATAAATTTTTTTAAAAAAAAAAAAAAGAG  47

seq1  GCTCTGCTTATGAATAGACAAAA-GGGCTGGAGAAATGACTCAGCGGGTA  96
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  GCTCTGCTTATGAATAGACAAAAGGGGCTGGAGAGATGACTCAGCGGGTA  97

seq1  AGAGCACTGACTGCTCTTCTGAAGGTCCTGAGTTC-AAATCCCAGCAACC  145
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAGCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAAATCCCAGCAACC  147

seq1  ACGTGGTGGCTCACAACCATCCGTAATGAGATCTGATGCCCGCTTCTGGG  195
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACGTGGTGGCTCACAACCATCCGTAATGAGATCTGATGCCCGCTTTTGGG  197

seq1  GTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCT  247

seq1  TTTTTAAAAATCTTAAAAAATGAATAGACAAAAAAAATTAATAAATCTAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAATCTTAAAAAATGAATAGACAAAAAAAATTAATAAATCTAC  297

seq1  CCCACACTCTTCTAAGACACATATTTCCCCACATACCCTGTGAATGTCTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTCTTCTAAGACACATATTTCCCCACATACCCTGTGAATGTCTA  347

seq1  AAGACAAATGCACAAGAGTATTAAGATTGCTCTTAATTACATATTAAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAATGCACAAGAGTATTAAGATTGCTCTTAATTACATATTAAAAA  397

seq1  TGTTAAAATCCTTAATTATTCTTAATGTCCGCTTGTTTAGTAACTAGATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAATCCTTAATTATTCTTAATGTCCGCTTGTTTAGTAACTAGATC  447

seq1  TACAACATATAAATGATTATTAAAACATTTTATAATCTAATATATGTGTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACATATAAATGATTATTAAAACATTTTATAATCTAATATATGTGTG  497

seq1  TTTATATATGTGTATATATGGATATGGATAGCAAACTATTTATACATATC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATGTGTATATATGGATATGGATAGCAAACTATTTATACATATC  547

seq1  TCAAATGAACTCTGCTGACCAGTTTATACATTTATCTTCCCTTAAGTACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGAACTCTGCTGACCAGTTTATACATTTATCTTCCCTTAAGTACA  597

seq1  TGATAAAGGTTACTTACCAGACAGGAAAGCAATGTCTTGCATTAGGAAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAGGTTACTTACCAGACAGGAAAGCAATGTCTTGCATTAGGAAAT  647

seq1  GATTGATGTCCTTTAACTGGAGGAGCAGCCCAGTTTCTATGATAAACAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATGTCCTTTAACTGGAGGAGCAGCCCAGTTTCTATGATAAACAAG  697

seq1  AGAAGAAACAACATCAATGTCAAAAGTGTAGCTAGAACCATCCTGAAATC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAACAACATCAATGTCAAAAGTGTAGCTAGAACCATCCTGAAATC  747

seq1  CTCATTCTGCCCAAAAGAATTC  767
      ||||||||||||||||||||||
seq2  CTCATTCTGCCCAAAAGAATTC  769