This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Parameter
BAC name
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Search Result
BAC
Clone Name
B6Ng01-274F10
Chromosome
X (Build37)
Map Location
157,801,008 - 157,802,114
singlet/doublet
singlet
Overlap gene
none
Upstream gene
Gpr64
,
Phka2
,
Ppef1
,
Rs1
,
Gja6
,
Scml2
,
LOC414364
Downstream gene
Prkaca-ps1
,
Rai2
,
Gm47
,
Nhs
Link
Open Mouse BAC browser
Click to get alignment info.
name
Gpr64
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:237175
MGI:2446854
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs
name
Phka2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:110094
MGI:97577
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ppef1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:237178
MGI:1097157
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Rs1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:20147
MGI:1336189
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gja6
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:414089
MGI:95717
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Scml2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:107815
MGI:1340042
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC414364
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:414364
definition
note
: vitamin K epoxide reductase complex, subunit 1-like 1 pseudogene 5
pseudo
: _no_value
name
Prkaca-ps1
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:237188
definition
note
: protein kinase, cAMP dependent, catalytic, alpha pseudogene 1
pseudo
: _no_value
name
Rai2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:24004
MGI:1344378
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gm47
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:195726
MGI:2684893
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
name
Nhs
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:195727
MGI:2684894
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gpr64
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:119943141
GeneID:237175
MGI:2446854
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: G protein-coupled receptor 64
transcript_id
: NM_178712.3
name
Gpr64
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:119943130
GeneID:237175
MGI:2446854
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: G protein-coupled receptor 64
transcript_id
: NM_001079857.1
name
Gpr64
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:119943135
GeneID:237175
MGI:2446854
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: G protein-coupled receptor 64
transcript_id
: NM_001079847.1
name
Gpr64
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:119943138
GeneID:237175
MGI:2446854
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: G protein-coupled receptor 64
transcript_id
: NM_001079848.1
name
Phka2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141801780
GeneID:110094
MGI:97577
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: phosphorylase kinase alpha 2
transcript_id
: NM_172783.2
name
Ppef1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124244034
GeneID:237178
MGI:1097157
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: protein phosphatase with EF hand calcium-binding domain 1
transcript_id
: NM_011147.1
name
Rs1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:42476340
GeneID:20147
MGI:1336189
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: retinoschisis (X-linked, juvenile) 1 (human)
transcript_id
: NM_011302.3
name
Gja6
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:47894400
GeneID:414089
MGI:95717
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: gap junction membrane channel protein alpha 6
transcript_id
: NM_001001496.1
name
Scml2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118403327
GeneID:107815
MGI:1340042
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: sex comb on midleg-like 2 (Drosophila)
transcript_id
: NM_133194.3
name
Rai2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141803061
GeneID:24004
MGI:1344378
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: retinoic acid induced 2
transcript_id
: NM_198409.2
name
Gm47
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:83004682
GeneID:195726
MGI:2684893
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
product
: gene model 47, (NCBI)
transcript_id
: XM_112125.5
name
Nhs
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124486677
GeneID:195727
MGI:2684894
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Nance-Horan syndrome (human)
transcript_id
: NM_001081052.1
name
Gpr64
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31542914
GeneID:237175
MGI:2446854
definition
GO_function
: GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1; LNB-TM7 heptahelical receptor Me6
product
: G protein-coupled receptor 64 isoform 1
protein_id
: NP_848827.1
name
Gpr64
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:119943131
GeneID:237175
MGI:2446854
definition
GO_function
: GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2; LNB-TM7 heptahelical receptor Me6
product
: G protein-coupled receptor 64 isoform 2
protein_id
: NP_001073326.1
name
Gpr64
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:119943136
GeneID:237175
MGI:2446854
definition
GO_function
: GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: isoform 3 is encoded by transcript variant 3; LNB-TM7 heptahelical receptor Me6
product
: G protein-coupled receptor 64 isoform 3
protein_id
: NP_001073316.1
name
Gpr64
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:119943139
GeneID:237175
MGI:2446854
definition
GO_function
: GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: isoform 4 is encoded by transcript variant 4; LNB-TM7 heptahelical receptor Me6
product
: G protein-coupled receptor 64 isoform 4
protein_id
: NP_001073317.1
name
Phka2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27370156
CCDS:CCDS30504.1
GeneID:110094
MGI:97577
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005516 - calmodulin binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004689 - phosphorylase kinase activity [Evidence IEA]
GO_process
: GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0005977 - glycogen metabolism [Evidence IEA]
codon_start
: 1
product
: phosphorylase kinase alpha 2
protein_id
: NP_766371.1
name
Ppef1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124244035
GeneID:237178
MGI:1097157
definition
GO_function
: GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence ISS]
codon_start
: 1
note
: PPEF 1
product
: protein phosphatase with EF hand calcium-binding domain 1
protein_id
: NP_035277.1
name
Rs1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:42476341
CCDS:CCDS30505.1
GeneID:20147
MGI:1336189
definition
GO_function
: GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]
codon_start
: 1
product
: retinoschisis 1 homolog
protein_id
: NP_035432.3
name
Gja6
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:47894401
CCDS:CCDS30506.1
GeneID:414089
MGI:95717
definition
GO_component
: GO:0005922 - connexon complex [Evidence IEA]; GO:0005921 - gap junction [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0015285 - connexon channel activity [Evidence IEA]; GO:0005243 - gap-junction forming channel activity [Evidence IEA]
GO_process
: GO:0007154 - cell communication [Evidence IEA]; GO:0007267 - cell-cell signaling [Evidence IEA]
codon_start
: 1
note
: connexin 33
product
: gap junction membrane channel protein alpha 6
protein_id
: NP_001001496.1
name
Scml2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:118403328
GeneID:107815
MGI:1340042
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_process
: GO:0045449 - regulation of transcription [Evidence IEA]
codon_start
: 1
product
: sex comb on midleg-like 2
protein_id
: NP_573457.3
name
Rai2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:38259196
CCDS:CCDS30507.1
GeneID:24004
MGI:1344378
definition
codon_start
: 1
exception
: mismatches in translation
product
: retinoic acid induced 2
protein_id
: NP_940801.1
name
Gm47
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:83004683
GeneID:195726
MGI:2684893
definition
codon_start
: 1
product
: hypothetical protein LOC195726
protein_id
: XP_112125.5
name
Nhs
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124486678
GeneID:195727
MGI:2684894
definition
codon_start
: 1
product
: Nance-Horan syndrome
protein_id
: NP_001074521.1
clone name
MSMg01-544N16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-388F24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-412P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-398F07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-383H20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-085K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-361J04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-433L11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-443N14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-176N18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-131G10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-422N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-538M24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-472I17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338M01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-465F22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-357P01
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-133C21
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-517J21
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-368E12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343M19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-489J09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-302L10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-293M03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-325B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-344A24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-139M16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-157N19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-451M03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291A14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-140C07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-505I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-182G16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-183J22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526E16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-093P03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-346N20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-194L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-064F23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-494J07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-389J04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-448J11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147P10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-511G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-327G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-489N21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-150M05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-279H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544G23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-103O22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368O20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-176G21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-081I16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-211C12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-155P20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-245O05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-144N15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-081G13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-242M16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-006D16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-159M02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-268B21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-062H13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-065L03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-263N05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-319I03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-059H07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-294C15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-129J01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-019B05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-002A10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-031A23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-059N19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-279N14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-178I05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-115E01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-252J20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-302P06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-029P05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-084K06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-274F10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-104F19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-185F04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-335H18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-286F08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-005O16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-191E01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-190B06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-166N13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-183H05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-014K07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-160P14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-227H22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-077F24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-031G07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-072N11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-044A09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-013E17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-199K23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-008H22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-202L20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-100M21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-334P09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-157M12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-101G17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-326A11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-141J07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-098G14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-021K22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-202J09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-091A08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-218P07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-227D13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-198F06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-035C24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-334K10
singlet/doublet
doublet
plural/unique
unique
