BAC Information

Click to search

BAC

Clone NameB6Ng01-275G13
ChromosomeX (Build37)
Map Location 151,467,682 - 151,468,859
singlet/doubletsinglet
Overlap geneMagea2
Upstream geneOTTMUSG00000019268, LOC625650, LOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076, 4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8
Downstream geneMagea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394, Ptchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275G13.bB6Ng01-275G13.g
ACCGA076456GA076457
length1,2141,153
definitionB6Ng01-275G13.b B6Ng01-275G13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagaa
tccatctcataccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttcgtg
ggattggaagcttgtacaaccactctggaaatcagtctggtagttcctca
gaaaattggacatagtgctaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaataagggcacatgctccactat
gttcatagcagccttattcataatagccagaagctggaaagaaaccagat
gcccctcaacagaggaatggatacaaaaaatttggtacatttacacaatg
gagtactactcagctattaaaaggaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcaaatgatatgtactcactgataagaggatattagcccagaaac
ttagtataaccgagatataagagacaatttgtaaaacacatgaaactgaa
gaagaatgaagaccaaagtgtggacaccttgccccttctttgaattggaa
acaatcacccatagaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatctagagactgccatatccagggatctatcccataatt
agcctccaaacaatgacaccattgcatacactagcaagcgtttgctgaaa
agaccctgatatagctgtctcttgtgagactaggccggggcctagcaaac
acagaagtggatgctcagtcagctataggatggatcacagggcccccaat
ggaggagctagagaaagtatccaaggagctaaagaagatctgcaaccctg
taggtgcacaacattatgaattaccagtaccccggagctcgtgtctctag
ctgcatatgtgtcaaagatggcttagtcggcatcactgggaaagagatgc
catggacatgcaaattttataatggccccagtacaggacgtcaggctaaa
ggtggaatggtgctagggggtatgggtgactctcgcaatgcatcagcgac
atgcagcgtgcacg
gaattcccttgtgttagcaaatgccttggtgttaaactgggtatatgagt
tcctgcccagtcatttatgcctcatgatttggtggacaaaggtatttttt
ttgtgaggttcctgagatttgagcaacctatgctctgaattgtgatgtcc
agcacctctccagactttggtatctggggtctttgtgtactggacaccat
gtcatgtgactcctagaatggatgttgccttgtcctgccagttgaggaga
gaatttggggctcactctgaaatgttttaggacagatgatcccctgtata
atacagcttcatcctttggcctgcctagctctctgtcggtcacccttgtg
ggaaagttccctgcttcttcattctggagactatctaattttgctatcac
ttagacctttgcttgaggaaaggcaatggagtacttggctgtgtcaaaag
gctggtaagagtggactggggaagccttggttaggtctgagaaccaaaaa
tactatagtttaaatgatgtaacctgcatcaaagaggagcaccctcctgg
gaatcagctcctatccctcttcatctaagacccggtcctaagggaacatt
tcccaggtttgcagaaatgcaggagcatgtgggatttttattctggttga
aagttgaggagtgggtattttaagctaaatccaggatccagaagctcaga
caattaagcgagttttgtatcattttgggatcctgaaagaaacggtgatt
tcattactggaaagtgcttgggttctagtgtccatattggtggacaggga
agctaggggactgttttttgcggttccctgacttgaagggatgcctcagt
gagaacttgggcatatgattctctccctatcatacatttggggacatgga
ggtctccggaacgttttgtgaacgtcctgagtttaacggaacctctgtgc
tgacctgtggtacagagcacttcgggagcactcatatccggtgtctttga
ctctgcgcaattttgttctgagcgtctgagagtcttcatgctgtgcagtg
agttaggatttccggctcactatgaaacttaggactggagtcatcttagc
cttgctagttcagtcactaacttttggggagtgactccttagcctcgaag
tta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_151467682_151468859
seq2: B6Ng01-275G13.g_64_1216 (reverse)

seq1  TAACTTCGAGGGCTAAGGAGCTACTTCCCACAAAGTTAGTGGACTGGGAG  50
      ||||||||| ||||||||||  ||| |||| ||||||||| ||||  || 
seq2  TAACTTCGA-GGCTAAGGAGTCACTCCCCA-AAAGTTAGT-GACT--GAA  45

seq1  CTAGGCAGGCTAAAGGTTGACCCTCCAGTCCTTAAAGGTTTCATAGTGAG  100
      ||||  |||||||  | |||  ||||||||||   | |||||||||||||
seq2  CTAGCAAGGCTAA--GATGA--CTCCAGTCCT---AAGTTTCATAGTGAG  88

seq1  CCCGAAATTCTTACCTCAACTGGCACAGCATGGAGACCTCCCTTCCAGGA  150
      || |||| || || ||| ||| |||||||||| ||||      ||   ||
seq2  CCGGAAA-TCCTAACTC-ACT-GCACAGCATGAAGAC------TCTCAGA  129

seq1  CGCTCCAGAACAAAATGGCGCAGAGTCCAAAGGACACCGGATATGAGTGG  200
      |||| ||||||||||| ||||||||||  || |||||||||||||||| |
seq2  CGCT-CAGAACAAAATTGCGCAGAGTC--AAAGACACCGGATATGAGT-G  175

seq1  CTTCCGAAGTGCTCTGTACCACAGGTCAGCACAGAGGTTCCGTTAAACTC  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGAAGTGCTCTGTACCACAGGTCAGCACAGAGGTTCCGTTAAACTC  225

seq1  AGGACGTTCACAAAACGTTCCGGAGACCTCCATGTCCCCAAATGTATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGTTCACAAAACGTTCCGGAGACCTCCATGTCCCCAAATGTATGAT  275

seq1  AGGGAGAGAATCATATGCCCAAGTTCTCACTGAGGCATCCCTTCAAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAATCATATGCCCAAGTTCTCACTGAGGCATCCCTTCAAGTCA  325

seq1  GGGAACCGCAAAAAACAGTCCCCTAGCTTCCCTGTCCACCAATATGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCGCAAAAAACAGTCCCCTAGCTTCCCTGTCCACCAATATGGACA  375

seq1  CTAGAACCCAAGCACTTTCCAGTAATGAAATCACCGTTTCTTTCAGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACCCAAGCACTTTCCAGTAATGAAATCACCGTTTCTTTCAGGATC  425

seq1  CCAAAATGATACAAAACTCGCTTAATTGTCTGAGCTTCTGGATCCTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGATACAAAACTCGCTTAATTGTCTGAGCTTCTGGATCCTGGAT  475

seq1  TTAGCTTAAAATACCCACTCCTCAACTTTCAACCAGAATAAAAATCCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTAAAATACCCACTCCTCAACTTTCAACCAGAATAAAAATCCCAC  525

seq1  ATGCTCCTGCATTTCTGCAAACCTGGGAAATGTTCCCTTAGGACCGGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTGCATTTCTGCAAACCTGGGAAATGTTCCCTTAGGACCGGGTC  575

seq1  TTAGATGAAGAGGGATAGGAGCTGATTCCCAGGAGGGTGCTCCTCTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGAAGAGGGATAGGAGCTGATTCCCAGGAGGGTGCTCCTCTTTGA  625

seq1  TGCAGGTTACATCATTTAAACTATAGTATTTTTGGTTCTCAGACCTAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTTACATCATTTAAACTATAGTATTTTTGGTTCTCAGACCTAACC  675

seq1  AAGGCTTCCCCAGTCCACTCTTACCAGCCTTTTGACACAGCCAAGTACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCCCCAGTCCACTCTTACCAGCCTTTTGACACAGCCAAGTACTC  725

seq1  CATTGCCTTTCCTCAAGCAAAGGTCTAAGTGATAGCAAAATTAGATAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCTTTCCTCAAGCAAAGGTCTAAGTGATAGCAAAATTAGATAGTC  775

seq1  TCCAGAATGAAGAAGCAGGGAACTTTCCCACAAGGGTGACCGACAGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATGAAGAAGCAGGGAACTTTCCCACAAGGGTGACCGACAGAGAG  825

seq1  CTAGGCAGGCCAAAGGATGAAGCTGTATTATACAGGGGATCATCTGTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGGCCAAAGGATGAAGCTGTATTATACAGGGGATCATCTGTCCT  875

seq1  AAAACATTTCAGAGTGAGCCCCAAATTCTCTCCTCAACTGGCAGGACAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTCAGAGTGAGCCCCAAATTCTCTCCTCAACTGGCAGGACAAG  925

seq1  GCAACATCCATTCTAGGAGTCACATGACATGGTGTCCAGTACACAAAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATCCATTCTAGGAGTCACATGACATGGTGTCCAGTACACAAAGAC  975

seq1  CCCAGATACCAAAGTCTGGAGAGGTGCTGGACATCACAATTCAGAGCATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATACCAAAGTCTGGAGAGGTGCTGGACATCACAATTCAGAGCATA  1025

seq1  GGTTGCTCAAATCTCAGGAACCTCACAAAAAAAATACCTTTGTCCACCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTCAAATCTCAGGAACCTCACAAAAAAAATACCTTTGTCCACCAA  1075

seq1  ATCATGAGGCATAAATGACTGGGCAGGAACTCATATACCCAGTTTAACAC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAGGCATAAATGACTGGGCAGGAACTCATATACCCAGTTTAACAC  1125

seq1  CAAGGCATTTGCTAACACAAGGGAATTC  1178
      ||||||||||||||||||||||||||||
seq2  CAAGGCATTTGCTAACACAAGGGAATTC  1153