BAC Information

Click to search

BAC

Clone NameB6Ng01-276M15
ChromosomeX (Build37)
Map Location 116,600,621 - 116,601,504
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665087, LOC385417
Downstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, Pcdh11x, H2afb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276M15.bB6Ng01-276M15.g
ACCGA077479GA077480
length1,1101,198
definitionB6Ng01-276M15.b B6Ng01-276M15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtactgtccctggtattacactatctctttgagtaaaagttag
gtcactgtccttcacaggaatttaccatcactaaggaagaaagaagtttc
tgaccgtaggagaaaccagaatagatatttagaattatagctgagttaca
cctatatacaggaatttacaatggtttaggaagtagatccggctgtggtt
ttagagtattgcattattcatgagatggttagctagaacggaactcccta
gttagaaccatgacttggatgtgaaaccccttgccctaggagtgaaaagt
tctcacacctggcttctaagactatagctgaccttagatagggattactc
tgtctcagttattttattgcccagttcctgccagtctttgcgttttcatt
tcctctgttctgtgtaagagtcattaagcatccggtacctcatttgtacc
ttgtgggtatgtcaccaaactaccttgtcgtcttctgcattaaaagtctg
atgttcgatttggaaaattacattcagattccacacaaactctcctgtgt
gtgtgtctgtctgtcattcatccacactttgcccacctgcgtcgagaaac
cccgttccatgcagacacagggacccagagggtctgcggcacaatgtttt
attgcttcatatctttttttcagtatgagctatcaattatgctaaaatcc
ttagccattctgagaagtataagatgaacgtccagtgctgtttatactcc
ctccaccttaggatacagaaggtcaagcttgatggaaatttcttcaaaag
gacctaggtaggttttgcagcagttggcagtcttgaatttatttaaaatc
tgctgggatagagatttattataatggtggtgttttttttttttttttcg
ctgtaaagatagtaacagttaaattaaatgaatgctaaattttagtagct
agaactagctgtcccttatgtaaagatgtcaagctgccaatggaaaaatc
agtttctatcatcttcctacacacaaagatatcctcacaatttatcccaa
gtgttacatctgcatttgtcttgggttacattacctgtctactgtaccct
atgaacagct

gaattctgtaggcttcttgtatgttcataggcatgtctttctttaggatt
gggaagttttcttctataattttgttgaaaatattttctggccctttaag
ttgaaagtcttcattctcatctactcccattatctgtaggtttggtcttc
tcattgtgtcctggatttcctggatgttttgagttaggacatttatgcat
tttgcattttctttgattgttgtgccgatgttgtctatggaatcttctgc
acctgagattctctcttccatctcttgtattctgttgctgatgcttgcgt
ctatggttccagatttcgttcctaggatttctatctccagtgttgtctca
ctttgtgttttctttattgtgtccacttccctttttaggtctagtatggt
tttgttcatttccatcacctgtttggatatgttttcctctttttctttaa
ggacttgtaactctttagcagtgttctcctgtgtttctttaagtgagtta
ttaaagtccttcttgatgtcctctaccatcatcatgagatatgcttttaa
atccaggtctagtttttcgggtgtgttggggtgcccaggactgggtgggg
tgggagtactgcattctgatgatggtgagtggtcttggtttctgttagta
atattcttatgtctgcctttcgccatctggtaatctctggagtcagttgt
tatagttgtctctggttagagcttgttcctcaggtgattcagttagcctc
tatcagcagacctgggagacttgctctctcctgattttcactgtttagag
cactctctgcaggtaagctctcctcttgcagagaaaggtgaacagatatc
tgatttttggacttgcgttctggcagaatatgaagggctgaacagggcct
gacccagaaactgttagcttctgtcgtccacactctcacctgtgcagact
agtcttgttgggatccaggaaccaagattgtctctggcagatgctctggc
caatgcccttccgtggtgggagtggacaacctgttcctcctggcaagagg
tgccctggattgtttggagcccagaatggtccttaccttagagctcttat
cgcttctcgcctgttccagaagtggttagctttctgtccaatggcttctt
tataggttagtgtggatgcattccacatcacttgtcgagttcctctcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_116600621_116601504
seq2: B6Ng01-276M15.b_292_1156

seq1  CCCTAGTTAGAACCATGACTTGGATGTGAAACCCCTTGCCCTAGGAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTTAGAACCATGACTTGGATGTGAAACCCCTTGCCCTAGGAGTGA  50

seq1  AAAGTTCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATAGGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATAGGGAT  100

seq1  TACTCTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTCTTTGCGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTCTTTGCGTTT  150

seq1  TCATTTCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTACCTCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTACCTCATTT  200

seq1  GTACCTTGTGGGTATGTCACCAAACTACCTTGTCGTCTTCTGCATTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTGTGGGTATGTCACCAAACTACCTTGTCGTCTTCTGCATTAAAA  250

seq1  GTCTGATGTTCGATTTGGAAAATTACATTCAGATTCCACACAAACTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATGTTCGATTTGGAAAATTACATTCAGATTCCACACAAACTCTCC  300

seq1  TGTGTGTGTGTCTGTCTGTCATTCATCCACACTTTGCCCACCTGCGTCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTCTGTCTGTCATTCATCCACACTTTGCCCACCTGCGTCGA  350

seq1  GAAACCCCGTTCCATGCAGACACAGGGACCCAGAGGGTCTGCGGCACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCCGTTCCATGCAGACACAGGGACCCAGAGGGTCTGCGGCACAAT  400

seq1  GTTTTATTGCTTCATATCTTTTTTTCAGTATGAGCTATCAATTATGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTGCTTCATATCTTTTTTTCAGTATGAGCTATCAATTATGCTAA  450

seq1  AATCCTTAGCCATTCTGAGAAGTATAAGATGAACGTCCAGTGCTGTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTAGCCATTCTGAGAAGTATAAGATGAACGTCCAGTGCTGTTTAT  500

seq1  ACTCCCTCCACCTTAGGATACAGAAGGTCAAGCTTGATGGAAATTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTCCACCTTAGGATACAGAAGGTCAAGCTTGATGGAAATTTCTTC  550

seq1  AAAAGGACCTAGGTAGGTTTTGCAGCAGTTGGCAGTCTTGAATTTATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGACCTAGGTAGGTTTTGCAGCAGTTGGCAGTCTTGAATTTATTTA  600

seq1  AAATCTGCTGGGATAGAGATTTATTATAATGGTGGTGTTTTTTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCTGGGATAGAGATTTATTATAATGGTGGTGTTTTTTTTTTTTT  650

seq1  TTTCGCTGTAAAGATAGTAACAGTTAAATTAAAATGAATGCTAAAATTTT  700
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  TTTCGCTGTAAAGATAGTAACAGTTAAATT-AAATGAATGCT-AAATTTT  698

seq1  AGTAGCTAAGAACTAGCTGTCCCCTTATGTAAAGATGTCAAGCTGCCAAT  750
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  AGTAGCT-AGAACTAGCTGT-CCCTTATGTAAAGATGTCAAGCTGCCAAT  746

seq1  GGAAAAAATCAGTTTTCCTATTCATCTTCCCTAACACAACAAAGATAATC  800
      || ||||||||||||  ||| |||||||||   |||| |||||||| |||
seq2  GG-AAAAATCAGTTT--CTA-TCATCTTCC--TACAC-ACAAAGAT-ATC  788

seq1  CTCACAATATATCCCCAGTGGTACAATTCTGGCAATTTTGTCTTGGGGTA  850
      |||||||| |||||| |||| ||||  ||| |||  ||||||||||| ||
seq2  CTCACAATTTATCCCAAGTGTTACA--TCT-GCA--TTTGTCTTGGGTTA  833

seq1  ACAAATAACTGTCTAACTGTA-CCTATGAACAGCT  884
         | || |||||| |||||| |||||||||||||
seq2  --CATTACCTGTCT-ACTGTACCCTATGAACAGCT  865


| Home | SequenceCutter | Blast | Download |