BAC Information

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BAC

Clone NameB6Ng01-277H06
ChromosomeX (Build37)
Map Location 114,669,840 - 114,862,120
singlet/doubletdoublet
Overlap geneLOC665066
Upstream geneEG624153, LOC100039300, EG665045, LOC100039319, LOC624284
Downstream geneEG624388, ENSMUSG00000072994, LOC100039551, Tgifx1, LOC665087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277H06.bB6Ng01-277H06.g
ACCGA077970GA077971
length1,0631,019
definitionB6Ng01-277H06.b B6Ng01-277H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,669,840 - 114,670,897)(114,861,101 - 114,862,120)
sequence
gaattccaatccttggtcactaagcatcctaatataggagcctatattgg
tcattctgtttttaaaatttaaatttaatgttttttattaaattcattca
tttttattctttaatcctttttaaattattaaacttaatttttattagat
attttatttatttatatttcaaatgtcatccactttactagtttccctct
gaaaatcccctatccccttcccccactccccaacccacgtactccaagat
ctttaatcctttttgatagttaagagtgcatccccttccatgtctgcccc
ccttatggcaccccattccatccttccttctcccctacccccagtttcca
agaagatatccccaaaatctccaccaggccttcttattccctgggcctca
agtttctcaagggttaggcatatcttctctcactgaggccagaccagcca
tttctctactgtatatgtgtcagtggcctcatatcagctggtgtaggttg
cctacttggtgactcagcatctgagagatctcatgggtctaggtcagttg
agactccttgttttcccattgggctgcgctcctcttcagcttcttccaga
ttttctcaaattcaaccacagtggtcaccagcttcagtccattggatggg
tgctagtatctgcatctgactctttaaggtgcttgttgggcctctcagag
ggatcattcttatcaaggagttatatacctgtgctccgcattggatctct
ctgtagcagatataatctttggcctgtgcttattgtcttgaaccttcatg
tgtgaaatgtacttttacacaatactgggtatcttggatttggggaagag
aaagcaatgggcaacaattttctggacctttcaatgttgctttatgtcgt
aatgtactaaaaccctgtcttgtgctctctaccctaaaattatcaacttt
tgtgcttatagtttggtacaagaatagctgttaaatatctaatgacaaga
tcctaaaagatcttttcctctgctgcaattttaactttacctcattaaag
gaagaattttgtt

gaattccttcatttctactttttggaagagcataggaattgctattaaaa
tggttattttagaactttgctggatctcagagggaaggtaccaaattttg
agttttaattctgtggagcacacatattctttcttctgattcaatattac
tattaaatattgcagttcttagtcctttttcctttatcccttgctcttgg
taagtatgtttccaaatatgattatttttctgaatttggtgctacatagt
ggttactaataacattgaataatccattttatatatccagtgttagtgct
aataacttctgctttaatttaattgaaatattccccttttttcaatctaa
ttaaagttttatttatctctttaaaaacaaattcagagttttgttttttg
taatgttttattgtgtacctgtaggttccctttgggcatattcttctttg
atgtttataattttctcatgtaaattttatctttctgtactctttatttt
catgagaaacaataataagttgtaaaacatttcattctttttattttgat
attttaaaatataattttactattaatgtatcttgctaaatgctattgat
ttctctaggttaagcctctatttaaatttatttcatgaactaaaagacat
tatataaaatggaaaggtttctgcagttcagagcatgcgataaacgctgt
gaaactgacaatatatctgacaaggggctgatacccaggagaagtagggg
gtttgcctaccaagtgtaagaacttaaatttcttaatttgaaatattagc
tgtgaattagtacaggcaaatgtggaaattaaaaagttagctccaataga
aattaggagtagatatacatcagactgatagaaccaaagtaggcaagcag
agaagacaagggaaaatcatggaatgtagcatctttattatattgtgaat
tctgttcagatatgtatgatctgatctcacctcacctattagcccaatgt
taaagtattcctcccccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_114669840_114670897
seq2: B6Ng01-277H06.b_39_1100

seq1  GAATTCCAATCCTTGGTCACTAAGCATCCTAATATAGGAGCCTATATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCCTTGGTCACTAAGCATCCTAATATAGGAGCCTATATTGG  50

seq1  TCATTCTGTTTTTAAAATTTAAATTTAATGTTTTTTATTAAATTCATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGTTTTTAAAATTTAAATTTAATGTTTTTTATTAAATTCATTCA  100

seq1  TTTTTATTCTTTAATCCTTTTTAAATTATTAAACTTAATTTTTATTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCTTTAATCCTTTTTAAATTATTAAACTTAATTTTTATTAGAT  150

seq1  ATTTTATTTATTTATATTTCAAATGTCATCCACTTTACTAGTTTCCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTATTTATATTTCAAATGTCATCCACTTTACTAGTTTCCCTCT  200

seq1  GAAAATCCCCTATCCCCTTCCCCCACTCCCCAACCCACGTACTCCAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCCCCTATCCCCTTCCCCCACTCCCCAACCCACGTACTCCAAGAT  250

seq1  CTTTAATCCTTTTTGATAGTTAAGAGTGCATCCCCTTCCATGTCTGCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCTTTTTGATAGTTAAGAGTGCATCCCCTTCCATGTCTGCCCC  300

seq1  CCTTATGGCACCCCATTCCATCCTTCCTTCTCCCCTACCCCCAGTTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGGCACCCCATTCCATCCTTCCTTCTCCCCTACCCCCAGTTTCCA  350

seq1  AGAAGATATCCCCAAAATCTCCACCAGGCCTTCTTATTCCCTGGGCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATATCCCCAAAATCTCCACCAGGCCTTCTTATTCCCTGGGCCTCA  400

seq1  AGTTTCTCAAGGGTTAGGCATATCTTCTCTCACTGAGGCCAGACCAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCAAGGGTTAGGCATATCTTCTCTCACTGAGGCCAGACCAGCCA  450

seq1  TTTCTCTACTGTATATGTGTCAGTGGCCTCATATCAGCTGGTGTAGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTACTGTATATGTGTCAGTGGCCTCATATCAGCTGGTGTAGGTTG  500

seq1  CCTACTTGGTGACTCAGCATCTGAGAGATCTCATGGGTCTAGGTCAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTGGTGACTCAGCATCTGAGAGATCTCATGGGTCTAGGTCAGTTG  550

seq1  AGACTCCTTGTTTTCCCATTGGGCTGCGCTCCTCTTCAGCTTCTTCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCTTGTTTTCCCATTGGGCTGCGCTCCTCTTCAGCTTCTTCCAGA  600

seq1  TTTTCTCAAATTCAACCACAGTGGTCACCAGCTTCAGTCCATTGGATGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAAATTCAACCACAGTGGTCACCAGCTTCAGTCCATTGGATGGG  650

seq1  TGCTAGTATCTGCATCTGACTCTTTAAGGTGCTTGTTGGGCCTCTCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTATCTGCATCTGACTCTTTAAGGTGCTTGTTGGGCCTCTCAGAG  700

seq1  GGATCATTCTTATCAAGGAGTTATATACCTGTGCTCCGCATTGGATCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATTCTTATCAAGGAGTTATATACCTGTGCTCCGCATTGGATCTCT  750

seq1  CTGTAGCAGATATAATCTTTGGCCTGTGCTTATTGTCTTGAACCTTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCAGATATAATCTTTGGCCTGTGCTTATTGTCTTGAACCTTCATG  800

seq1  TGTGAAATGTACTTTTACACAATACTGGGTATCTTGGATTTGGGGAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATGTACTTTTACACAATACTGGGTATCTTGGATTTGGGGAAGAG  850

seq1  AAAGCAATGGGCAACAATTTTCTGGACCTTTCAATGTTGCTTTATGTCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATGGGCAACAATTTTCTGGACCTTTCAATGTTGCTTTATGTCGT  900

seq1  AATGTACTAAAACCCTGTCTTGTGCTCTCTACCCTAAAATTATCAACTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACTAAAACCCTGTCTTGTGCTCTCTACCCTAAAATTATCAACTTT  950

seq1  TGTGCTTATAGTTTGGTACAAGAATAGCTGTTAAATATCTAATGACAAAG  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTGCTTATAGTTTGGTACAAGAATAGCTGTTAAATATCTAATGAC-AAG  999

seq1  ATCCTAAAAGATCTTT--CTCTGCTGCAATTTT-ACTTTA-CTCATTAAA  1046
      ||||||||||||||||  ||||||||||||||| |||||| |||||||||
seq2  ATCCTAAAAGATCTTTTCCTCTGCTGCAATTTTAACTTTACCTCATTAAA  1049

seq1  GGAAG-ATTTTGT  1058
      ||||| |||||||
seq2  GGAAGAATTTTGT  1062


seq1: chrX_114861101_114862120
seq2: B6Ng01-277H06.g_62_1080 (reverse)

seq1  TTTGGGGA-GAATACTTTAAACATT-GGCTAATAGGTGAGGTGAGATCAG  48
      || ||||| ||||||||| |||||| ||||||||||||||||||||||||
seq2  TTGGGGGAGGAATACTTT-AACATTGGGCTAATAGGTGAGGTGAGATCAG  49

seq1  ATCATACATTATCTGAAACAGAATTCACAATATAATAAAGAATGCTACAT  98
      |||||||| |||||| |||||||||||||||||||||||| |||||||||
seq2  ATCATACA-TATCTG-AACAGAATTCACAATATAATAAAG-ATGCTACAT  96

seq1  TCCATGATTTT-CCTTGTCTTCTCTGCTTGCCTACTTTTGTTCTATCAGT  147
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  TCCATGATTTTCCCTTGTCTTCTCTGCTTGCCTACTTTGGTTCTATCAGT  146

seq1  CTGATGTATATCTACTCCTAATTTCTATTGGAGCTAACTTTTTAATTTCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTATATCTACTCCTAATTTCTATTGGAGCTAACTTTTTAATTTCC  196

seq1  ACATTTGCCTGTACTAATTCACAGCTAATATTTCAAATTAAGAAATTTAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCCTGTACTAATTCACAGCTAATATTTCAAATTAAGAAATTTAA  246

seq1  GTTCTTACACTTGGTAGGCAAACCCCCTACTTCTCCTGGGTATCAGCCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTACACTTGGTAGGCAAACCCCCTACTTCTCCTGGGTATCAGCCCC  296

seq1  TTGTCAGATATATTGTCAGTTTCACAGCGTTTATCGCATGCTCTGAACTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGATATATTGTCAGTTTCACAGCGTTTATCGCATGCTCTGAACTG  346

seq1  CAGAAACCTTTCCATTTTATATAATGTCTTTTAGTTCATGAAATAAATTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCTTTCCATTTTATATAATGTCTTTTAGTTCATGAAATAAATTT  396

seq1  AAATAGAGGCTTAACCTAGAGAAATCAATAGCATTTAGCAAGATACATTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGGCTTAACCTAGAGAAATCAATAGCATTTAGCAAGATACATTA  446

seq1  ATAGTAAAATTATATTTTAAAATATCAAAATAAAAAGAATGAAATGTTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAAATTATATTTTAAAATATCAAAATAAAAAGAATGAAATGTTTT  496

seq1  ACAACTTATTATTGTTTCTCATGAAAATAAAGAGTACAGAAAGATAAAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTATTATTGTTTCTCATGAAAATAAAGAGTACAGAAAGATAAAAT  546

seq1  TTACATGAGAAAATTATAAACATCAAAGAAGAATATGCCCAAAGGGAACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGAGAAAATTATAAACATCAAAGAAGAATATGCCCAAAGGGAACC  596

seq1  TACAGGTACACAATAAAACATTACAAAAAACAAAACTCTGAATTTGTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTACACAATAAAACATTACAAAAAACAAAACTCTGAATTTGTTTT  646

seq1  TAAAGAGATAAATAAAACTTTAATTAGATTGAAAAAAGGGGAATATTTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGATAAATAAAACTTTAATTAGATTGAAAAAAGGGGAATATTTCA  696

seq1  ATTAAATTAAAGCAGAAGTTATTAGCACTAACACTGGATATATAAAATGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTAAAGCAGAAGTTATTAGCACTAACACTGGATATATAAAATGG  746

seq1  ATTATTCAATGTTATTAGTAACCACTATGTAGCACCAAATTCAGAAAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCAATGTTATTAGTAACCACTATGTAGCACCAAATTCAGAAAAAT  796

seq1  AATCATATTTGGAAACATACTTACCAAGAGCAAGGGATAAAGGAAAAAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATTTGGAAACATACTTACCAAGAGCAAGGGATAAAGGAAAAAGG  846

seq1  ACTAAGAACTGCAATATTTAATAGTAATATTGAATCAGAAGAAAGAATAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAACTGCAATATTTAATAGTAATATTGAATCAGAAGAAAGAATAT  896

seq1  GTGTGCTCCACAGAATTAAAACTCAAAATTTGGTACCTTCCCTCTGAGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTCCACAGAATTAAAACTCAAAATTTGGTACCTTCCCTCTGAGAT  946

seq1  CCAGCAAAGTTCTAAAATAACCATTTTAATAGCAATTCCTATGCTCTTCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAAGTTCTAAAATAACCATTTTAATAGCAATTCCTATGCTCTTCC  996

seq1  AAAAAGTAGAAATGAAGGAATTC  1020
      |||||||||||||||||||||||
seq2  AAAAAGTAGAAATGAAGGAATTC  1019


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