BAC Information

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BAC

Clone NameB6Ng01-277J24
Chromosome11 (Build37)X (Build37)
Map Location 90,988,393 - 90,989,45284,408,990 - 84,409,492
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
Downstream geneEG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277J24.bB6Ng01-277J24.g
ACCGA078096GA078097
length1,0491,167
definitionB6Ng01-277J24.b B6Ng01-277J24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,988,393 - 90,989,452)(84,408,990 - 84,409,492)
sequence
gaattctaaattgtatcccagagtttaatttaattagcaatatacattta
caacaaggaatgtaaagtccttaaggtcaaaaggatagaagaaacagttt
taaaaatctcagtgctaaaacgatgttgtttagcaaccaagtgaaggtca
tttttttttttttttttttttactataaaggaatctttagggtgctcact
gaaaatccattgcaataataaaagcaagcgtcactaaatcagccttgatt
ctccatgtaatgagccccggacattccaaggcactccagaataacacagg
accagtgttccttatgcatttctcattaactgtttaaagcctcctgactt
tgtggagtcaccgcactaggttctaagtggtctacgaaatggaaaagaaa
gcacaggctctccccactccccccaacagttgcagtttttgcaaagtatc
attaattgtcattccattatatatgggccttttaaagtaacccagcacag
atatatcagcattcaccatggaaaccgataagaatcatcctgatccaatt
cagaattcatctgggtcaagaaacctgtcacctgccagaaccaggaactt
acaacattcgagttctttcccctctcccttcgtcttcctccccaacccca
ccacacatgactgctcttcctcatctcccttccatgtccctctgtttctg
tcacacctcggtttggatacggccctggaccaattctcctactaaggtat
gcattctaatggatctcctgcctactcatggggttggagggcctccaaaa
cagaaaaacaaagagcatccatgcaccccaacttggcatcccaggctacc
tctctccctgtttctaatttaatatgagaatcctatcaccaaggtgttgt
gacttcagaacatcattgcaattcattgccttccatgaaaccagaatgca
tcttaccactatttgctagcatagatttggggaggggcagagaaggttag
tagaccttagaagaagaaatgctactgaactgaattgtagataggtata
gaattctcacttgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaatattcaggtgactgc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaataagtctggcggttcctca
aataattgtacttagtactactagaggatcctgcaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaggacatatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttactcaatg
gagtactacttaggtattaaaaagaatgaagttatgaaattcctaggcaa
atggatggacctggagggcatcatcttgagtgaggtaacacaatcacaaa
agaactcacatgatatgttctcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgagaaacacatgaaactcaa
gaagatcgaagaccaaagtgtggacactttgcctcttcttagaattggga
acaaaacacccatggaaggagttacagagacaaattttggagctgagacg
aaaggatggaccatctagagactgccatacccggggatccatcccataat
cagcctctaaaccctgacaccattgcatacactagcaagattttgctgaa
aggaccctgatacagctgtctcttgtgagactatgccggggcctagcaaa
cacataagtggatgctcacagtcagctattggatggatcacagggtcccc
aatagaggagctagagaagtacccaaagagcttggcgggatctgcaccct
tataggtggaacaacaaaatgactagcagtacaccctcccccccaggagt
catgtctctagctgcatatgtatcagagatgccctattcggcatcagtgt
aaagaaaggccaattggtcagtccactattgccctcagattcaaggaatt
gccacaggtccaaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_90988393_90989452
seq2: B6Ng01-277J24.b_46_1094 (reverse)

seq1  TATA-CTATCTACAAATTCAGTTTCAGTTAGCATTTC-TCTTCCTTAAGG  48
      |||| |||||||| ||||||| ||||| ||||||||| |||||  |||||
seq2  TATACCTATCTAC-AATTCAG-TTCAG-TAGCATTTCTTCTTC--TAAGG  45

seq1  TCTACTAAACTTCCTTCCTGCCCCCTCCCCAAATTCTATGCTTAGCAAAT  98
      |||||||| ||||    ||| |||||||||||| ||||||| ||||||||
seq2  TCTACTAACCTTC---TCTG-CCCCTCCCCAAA-TCTATGC-TAGCAAAT  89

seq1  AGTGGTAAGATGCATTCTGGTTTCATGGAAGGCAATGAATTGCAATGATG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAAGATGCATTCTGGTTTCATGGAAGGCAATGAATTGCAATGATG  139

seq1  TTTCTGAAGTCACAAACACCTTGGTGATAGGATTCTCATATTAAATTAGA  198
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -TTCTGAAGTCAC-AACACCTTGGTGATAGGATTCTCATATTAAATTAGA  187

seq1  AACAGGGAGAGAGGTAGCCTGGGATGCCAAGTTGGGGTGCATGGATGCTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGAGAGAGGTAGCCTGGGATGCCAAGTTGGGGTGCATGGATGCTC  237

seq1  TTTGTTTTTCTGTTTTGGAGGCCCTCCAACCCCATGAGTAGGCAGGAGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTCTGTTTTGGAGGCCCTCCAACCCCATGAGTAGGCAGGAGAT  287

seq1  CCATTAGAATGCATACCTTAGTAGGAGAATTGGTCCAGGGCCGTATCCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGAATGCATACCTTAGTAGGAGAATTGGTCCAGGGCCGTATCCAA  337

seq1  ACCGAGGTGTGACAGAAACAGAGGGACATGGAAGGGAGATGAGGAAGAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGGTGTGACAGAAACAGAGGGACATGGAAGGGAGATGAGGAAGAGC  387

seq1  AGTCATGTGTGGTGGGGTTGGGGAGGAAGACGAAGGGAGAGGGGAAAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTGTGGTGGGGTTGGGGAGGAAGACGAAGGGAGAGGGGAAAGAA  437

seq1  CTCGAATGTTGTAAGTTCCTGGTTCTGGCAGGTGACAGGTTTCTTGACCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAATGTTGTAAGTTCCTGGTTCTGGCAGGTGACAGGTTTCTTGACCC  487

seq1  AGATGAATTCTGAATTGGATCAGGATGATTCTTATCGGTTTCCATGGTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATTCTGAATTGGATCAGGATGATTCTTATCGGTTTCCATGGTGA  537

seq1  ATGCTGATATATCTGTGCTGGGTTACTTTAAAAGGCCCATATATAATGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATATATCTGTGCTGGGTTACTTTAAAAGGCCCATATATAATGGA  587

seq1  ATGACAATTAATGATACTTTGCAAAAACTGCAACTGTTGGGGGGAGTGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATTAATGATACTTTGCAAAAACTGCAACTGTTGGGGGGAGTGGG  637

seq1  GAGAGCCTGTGCTTTCTTTTCCATTTCGTAGACCACTTAGAACCTAGTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTGTGCTTTCTTTTCCATTTCGTAGACCACTTAGAACCTAGTGC  687

seq1  GGTGACTCCACAAAGTCAGGAGGCTTTAAACAGTTAATGAGAAATGCATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTCCACAAAGTCAGGAGGCTTTAAACAGTTAATGAGAAATGCATA  737

seq1  AGGAACACTGGTCCTGTGTTATTCTGGAGTGCCTTGGAATGTCCGGGGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACTGGTCCTGTGTTATTCTGGAGTGCCTTGGAATGTCCGGGGCT  787

seq1  CATTACATGGAGAATCAAGGCTGATTTAGTGACGCTTGCTTTTATTATTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATGGAGAATCAAGGCTGATTTAGTGACGCTTGCTTTTATTATTG  837

seq1  CAATGGATTTTCAGTGAGCACCCTAAAGATTCCTTTATAGTAAAAAAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGATTTTCAGTGAGCACCCTAAAGATTCCTTTATAGTAAAAAAAAA  887

seq1  AAAAAAAAAAAATGACCTTCACTTGGTTGCTAAACAACATCGTTTTAGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAATGACCTTCACTTGGTTGCTAAACAACATCGTTTTAGCA  937

seq1  CTGAGATTTTTAAAACTGTTTCTTCTATCCTTTTGACCTTAAGGACTTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTTTTAAAACTGTTTCTTCTATCCTTTTGACCTTAAGGACTTTA  987

seq1  CATTCCTTGTTGTAAATGTATATTGCTAATTAAATTAAACTCTGGGATAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTGTTGTAAATGTATATTGCTAATTAAATTAAACTCTGGGATAC  1037

seq1  AATTTAGAATTC  1060
      ||||||||||||
seq2  AATTTAGAATTC  1049

seq1: chrX_84408990_84409492
seq2: B6Ng01-277J24.g_1055_1231 (reverse)

seq1  ATTTTTGGACCTGTGGCTAGATGAATGGTGTAAAATCAGCTAAAAGTATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGAGAATGGCCTTTAAGCTAAGTTTTCAGAAGCAAGGATAGGCAGGAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TACAGGGGAGAAGCTGTAGCATCATAAAAGTAGAAATAACGAGTTCAGGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGTTTTTTCGCCTGGGCACTTCTTATAGCTTAAACAAATATACCTCTA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTTTTTTTGTTTGTTTGTTTTTTTCCCTCTTTTTTTTTATTAAGTATT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TATTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCACCCCCACTCCC  300
                                                        
seq2  --------------------------------------------------  0

seq1  CAACCCCCATCCCCACCCACCCACTCCCACTTTTTGGCCC--TGGTGTTC  348
                                    ||||||| ||  |||   | 
seq2  -----------------------------ATTTTTGGACCTGTGGCAATT  21

seq1  CCCTGTA-CTG-GGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTT  396
      || || | ||| ||||| |||    | |   | ||||| ||||| |||||
seq2  CCTTGAATCTGAGGGCA-ATA---GTGGACTGACCAATTGGCCTTTCTTT  67

seq1  CCAGTGATGGCCTACTAGGCCATCTTCTGATACATATGCAGCTAGAGACA  446
       || |||| ||| | |||| |||| |||||||||||||||||||||||||
seq2  ACACTGAT-GCCGAATAGGGCATC-TCTGATACATATGCAGCTAGAGACA  115

seq1  CAAGCTCTGGGGAGTACTGGGTA--GC---TCATATTGTTGTTCCACCTA  491
        |   |||||| | |  | |||  ||   |||| |||||||||||||||
seq2  TGACTCCTGGGGGGGAGGGTGTACTGCTAGTCATTTTGTTGTTCCACCTA  165

seq1  TAGGGTTGCAGA  503
      || || ||||||
seq2  TAAGGGTGCAGA  177