BAC Information

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BAC

Clone NameB6Ng01-279H12
ChromosomeX (Build37)X (Build37)
Map Location 150,749,791 - 150,750,47636,329,153 - 36,329,421
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKlf8, EG635136, Ubqln2, Cypt3, LOC100039998, LOC667241, Kctd12b, 2210013O21Rik, Smt3h1-ps, Spin2, 4921511M17Rik, OTTMUSG00000019268, LOC625650, LOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076
Downstream gene4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279H12.bB6Ng01-279H12.g
ACCGA079443GA079444
length970969
definitionB6Ng01-279H12.b B6Ng01-279H12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(150,749,791 - 150,750,476)(36,329,153 - 36,329,421)
sequence
gaattccttggtcttgtggagtctctataacccagcacagcagaatgcta
tggtgctgaggtgggaggaatgggtagggcagcactctcattgaagcagg
gagtatggcagaagtgatagggtgtctaacaaggtaggggaatgacatct
aaaatataaataaataaaattttatatatacacacacatgtattcaaaaa
tacttacaaactgaattcaggaacatatcaaaaacattatctggcttggt
aaagtagctagccttcacctcagggatataggcataattgaaaagtagaa
aaatccatcaatgtaatctaccacataagaaaactaacagaaaaaaatca
tatgatctcattagatgatgaaaggcttttataaaatctaacaccccctt
catgttaaaattcttagagatatcgtggatagaaggcactgcataatcaa
agaaatattcatcatgcaaaaagccaacatcaaattaatggaaagaaaat
taaagcaactccactaaaatcagggacaagagaaggctgcccactctctt
tctatgtattcaatatagttcttgaagttccagacagagcaatgatacaa
tgaaagatgatcaagtggatataaattggaaaggaagaaatcaatgtatc
actgtttgtggatgatatgagtgcatatataagtgaactccaaaattcta
ccagagaacttctacagctggtaaacaccttcagcaaaaaaataagtagc
tctcctttgtacaaatgatatatggactgagagagaaattaggaaagcaa
cactctttacagtagccaagaataatataaaatatcttggtgcaattcta
accaagcaagtgagatatctgtatgatagaagctttaagttcctcataaa
agaaattaaagaattatctgaagatgcaaagatatcccatgctcatagat
aggtaggattaccataatga
gaattctgttgcttatgctggcatctatggttccagatttctttcctaga
gtttctatttccagtgttgtctcactttgggtttgctttattgtgtctac
ttccatttttagatcttggatggtattgttcaattccatcacctatatgt
ttctgtttttctgtttttctttaaggacttctaactcttttgaagtgttc
tcctgtatttctttaagtgagttattaaaatctttcttgatgtctactac
cagaatcaagagatatgattttaaatcgagacttgcatttcaagtgtgtt
ggggtatccaggaccagctgagttgggagttctgggttcttatgacagtg
agtgatcttggtttttgttagcaagattcttatgtttgcctttcaccatc
tggtattcgctggatttagttgttagagttgtctctggttggagcttgtt
cctcctttgattctgttagcctctgtcagcagacctgggagtgtagctct
ctcctgagtttcagtgatcagagtactctctgcaggcaagttctcctctt
gcagggaaggtgcaaagaggtctggtgtttggacttgtctcctgtctgaa
gatgaaggcatgaaagaggacctgtcccagaagctgtgacacttctgtct
gttccagaagctgtgtaactcctatagtccacacattcacctgtgcatac
tagtcactgaaggatctggaacccaagatggttcccccaggtactccatg
gcagagccctcccaggcagggcagacacttttcctctggcagggaaggtg
cccggatgtctggagatggagaagtggtctgtgccagaagctgtgtcgct
tctgcctgtcccagaagctggacagcttctgtgtctatgttcttctaggt
tccttctttttgtgtagtttaacaccacttcccagggaatgatgtcacaa
atatttagcatagattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_150749791_150750476
seq2: B6Ng01-279H12.b_43_728

seq1  GAATTCCTTGGTCTTGTGGAGTCTCTATAACCCAGCACAGCAGAATGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGTCTTGTGGAGTCTCTATAACCCAGCACAGCAGAATGCTA  50

seq1  TGGTGCTGAGGTGGGAGGAATGGGTAGGGCAGCACTCTCATTGAAGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGAGGTGGGAGGAATGGGTAGGGCAGCACTCTCATTGAAGCAGG  100

seq1  GAGTATGGCAGAAGTGATAGGGTGTCTAACAAGGTAGGGGAATGACATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGGCAGAAGTGATAGGGTGTCTAACAAGGTAGGGGAATGACATCT  150

seq1  AAAATATAAATAAATAAAATTTTATATATACACACACATGTATTCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAATAAATAAAATTTTATATATACACACACATGTATTCAAAAA  200

seq1  TACTTACAAACTGAATTCAGGAACATATCAAAAACATTATCTGGCTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACAAACTGAATTCAGGAACATATCAAAAACATTATCTGGCTTGGT  250

seq1  AAAGTAGCTAGCCTTCACCTCAGGGATATAGGCATAATTGAAAAGTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGCTAGCCTTCACCTCAGGGATATAGGCATAATTGAAAAGTAGAA  300

seq1  AAATCCATCAATGTAATCTACCACATAAGAAAACTAACAGAAAAAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATCAATGTAATCTACCACATAAGAAAACTAACAGAAAAAAATCA  350

seq1  TATGATCTCATTAGATGATGAAAGGCTTTTATAAAATCTAACACCCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCTCATTAGATGATGAAAGGCTTTTATAAAATCTAACACCCCCTT  400

seq1  CATGTTAAAATTCTTAGAGATATCGTGGATAGAAGGCACTGCATAATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAAAATTCTTAGAGATATCGTGGATAGAAGGCACTGCATAATCAA  450

seq1  AGAAATATTCATCATGCAAAAAGCCAACATCAAATTAATGGAAAGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTCATCATGCAAAAAGCCAACATCAAATTAATGGAAAGAAAAT  500

seq1  TAAAGCAACTCCACTAAAATCAGGGACAAGAGAAGGCTGCCCACTCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAACTCCACTAAAATCAGGGACAAGAGAAGGCTGCCCACTCTCTT  550

seq1  TCTATGTATTCAATATAGTTCTTGAAGTTCCAGACAGAGCAATGATACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTATTCAATATAGTTCTTGAAGTTCCAGACAGAGCAATGATACAA  600

seq1  TGAAAGATGATCAAGTGGATATAAATTGGAAAGGAAGAAATCAATGTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATGATCAAGTGGATATAAATTGGAAAGGAAGAAATCAATGTATC  650

seq1  ACTGTTTGTGGATGATATGAGTGCATATATAAGTGA  686
      ||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGTGGATGATATGAGTGCATATATAAGTGA  686

seq1: chrX_36329153_36329421
seq2: B6Ng01-279H12.g_67_293 (reverse)

seq1  TTTAATAACTCACTTAAAGAAATACAAGAGAACACTGCTAAAGAGTTACA  50
      |||||||||||||||||||||||||| ||||||||| | ||||||||| |
seq2  TTTAATAACTCACTTAAAGAAATACAGGAGAACACTTCAAAAGAGTTAGA  50

seq1  AGTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTA  100
      ||||||||||||||||||| |||||| || || | |||            
seq2  AGTCCTTAAAGAAAAACAGAAAAACAGAAACATATAGG------------  88

seq1  TATTAAAACAGGAAAACACATCCAAACAGATGATGGAAATGAACAAAACC  150
                                    |||||||| ||||||| |||
seq2  ------------------------------TGATGGAATTGAACAATACC  108

seq1  ATACTAGACATAAAAAGGGAAGTAGACACAATGAAGAAAACCCAAAGTGA  200
      || | |||  |||||| ||||||||||||||| ||| |||||||||||||
seq2  ATCCAAGATCTAAAAATGGAAGTAGACACAATAAAGCAAACCCAAAGTGA  158

seq1  GGCAACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAAACATAGATG  250
      | |||| ||||| |||||||| ||||||||||||||||||| ||||||||
seq2  GACAACACTGGAAATAGAAACTCTAGGAAAGAAATCTGGAACCATAGATG  208

seq1  CCAGCATCAGCAACAGAAT  269
      ||||||| |||||||||||
seq2  CCAGCATAAGCAACAGAAT  227