BAC Information

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BAC

Clone NameB6Ng01-280E11
ChromosomeX (Build37)
Map Location 131,688,125 - 131,901,465
singlet/doubletdoublet
Overlap geneLOC100040635, Tceal6, EG621322, Pramel3, EG621352
Upstream geneXkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941, Armcx1, LOC100040933, LOC100040520, Armcx6, Armcx3, Armcx2, LOC637800, LOC100040987, Nxf2, B930008K04Rik, EG621246
Downstream geneEG331529, EG621380, EG666040, EG666045, AV320801, EG621467, Nxf7, 4930534P07Rik, 1700008I05Rik, 1700129I15Rik, Gprasp1, Gprasp2, Bhlhb9, LOC100041110, 2900062L11Rik, 6530401D17Rik, Bex2, Nxf3, Bex4, Tceal8, Tceal5, Bex1, LOC100040972, Wbp5, Ngfrap1, LOC666180, LOC237048, LOC666196
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280E11.bB6Ng01-280E11.g
ACCGA080045GA080046
length1,1191,158
definitionB6Ng01-280E11.b B6Ng01-280E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,900,344 - 131,901,465)(131,688,125 - 131,689,295)
sequence
gaattctttaccaggtattccacttagctactgctgtagatttaacatag
tctagtcatatgagagtgtctcattttggaagtacccagatcagattgtc
ctgtagccatgtctgtgagaaatgatcttgattactgattggtgtggcag
atcctgtccactattaaaggtttcatcagcagcaggtgggtctgtgttgc
atcaaacacagcagctggagcagcaatctgcaagctggtgagcagtctta
tccatactgtctgcttaacatcctacctcctgccttgagacctgccttga
cctccctccatgaggacttgtggcctgggcctataggatgaaatggacat
tttcctccccaggctagctttggtcagtgtctcctcacagcaccaaaaag
ccaactagaacactggagaaggccctcttcaagattatcaggaacagttc
tctaggcagaagggatattaaatagaaacttagatctcaacaaggaaatg
attcatgggaaattgaatagaagaagttaaaagaaaataacacagtaact
taactgtgctgaaggcttgttaaaacttaaagagaaagcaatggtgactc
gctctgtttgtacctatgacagttgttcttctcgcggctcatcttttcca
gagagtctaagtggggtgttcaggttcagtgaggagactcagctagaagt
gcaggcaaacagtcattacttgggtaactcaggaggtgtggccttgtggc
aggaagtgtgtctccttgtaggcaggctttgaggtttcctagtgctcagg
ttccactcagtgttgagtgacagccccctcctggctgcctgcagaagaca
atctcctgctgctgctttcagaatgtggcataagagtcccaggctacaga
tgaagtcacccagaaatgcatgcagacttcaggcccagcagcttgtgcag
tgcagactccagtgagtgaatacgtataacacgagcccttacgattataa
ttaaatgtatcttctagaaatctcaaaatcactaatgtatgtacaccctg
gccattttaaggcattaattctagatttatttatttatttgcataggtgt
ttggctcacatgcatgttt
gaattcacacacgtcttattactatgaacccagaaattttcactaatgct
ttgaacagcttttaaactattaacttattatctttaattgtttgaaagct
aataaaaatttccattctttcatggttattgactgtatctttcaaagaat
tgtcaggtgtgtctagttttcacatgaacccaccattaataacaaaacca
ctgttaaaataaccaaaatctaataaagtacatttgagaactgatttgac
attattgataggaaatatattaatttatcatacaacaaaataaggaagca
atgagcagttaaaaaagaccaaaacttgaaaggatatttcttcaaagaca
atgaaaaagcatatcaggtgctcaacatttgtaactatcagggaaatgca
aatgaaaatgaaaaagaacccgatgtcttcacattcattgatgactatta
ccctttcctaagagtgggactttaaaattacatattcaccgtggatcaac
ttgtgtcatttaataaagaaatatatttaggaaatacatatactcatata
acaaaattcaattttaaaatgagtcatgaattttgaaggcagcaaagaga
ggcatatggaataatttggagggaggaaaggaaatgaggaaatgatataa
ttataatttcacatatacaataaataattaataaactttactttcttatg
tatctagtaattccatatgtgcatcctcaaaggtattagaagaagaaact
tcaacaagtattttgcaaggcaatagacatggcaatagtatttcatcata
atacaaacatggaactaagtcaatttttcaccatacatatgagtggataa
gcaaacaatgacatgttctattaggagaatgctgtttgtcctaaaatgga
atggcagcatagtaaacacaaaatgaatgaaacttgaaattttttgctag
agaaataatatgacaacaaaaaatacaatgcactgtgccattcataggga
tatagttaaaatagtaaaataattcatatacatcatagtcactagatttt
aggagacaggagatgtgaattactgtcatgcaagcagccttgggaaatga
taacaaaaaggctctgagttgactttactgacctttccaaataatacaaa
ttccttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_131900344_131901465
seq2: B6Ng01-280E11.b_48_1166 (reverse)

seq1  AAACATGCATGT-AGGCAAACACCTATGCAAATAAAATAAATAAATCTAG  49
      |||||||||||| || ||||||||||||||||| ||||||||||||||||
seq2  AAACATGCATGTGAGCCAAACACCTATGCAAAT-AAATAAATAAATCTAG  49

seq1  AA-TAATGCACTAAAATGGCCAGGGTGTACATACATTAGTGATTTTGGAG  98
      || ||||||  ||||||||||||||||||||||||||||||||||| |||
seq2  AATTAATGCCTTAAAATGGCCAGGGTGTACATACATTAGTGATTTT-GAG  98

seq1  ATTTCTAG-AGATACATTTAATTAATATCGTTAGGGCTCGTGTTATACGT  147
      |||||||| |||||||||||||||  ||||| ||||||||||||||||||
seq2  ATTTCTAGAAGATACATTTAATTATAATCGTAAGGGCTCGTGTTATACGT  148

seq1  ATTCACTCACTGGAGTCCTGCACCTGCACAAGCCTGCTGGGCCCTGAAGT  197
      |||||||||||||||| ||||| ||||||||| |||||||| ||||||||
seq2  ATTCACTCACTGGAGT-CTGCA-CTGCACAAG-CTGCTGGG-CCTGAAGT  194

seq1  CTGCATGCATTTCTGGGTGACTTCATCTGTGCCCTGGGACTCTTATGCCA  247
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  CTGCATGCATTTCTGGGTGACTTCATCTGTAGCCTGGGACTCTTATGCCA  244

seq1  CATTCTGAAAGCAGCAGCAGGAGATTGTCTTCTGCAGGCAGCCAGGAGGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGAAAGCAGCAGCAGGAGATTGTCTTCTGCAGGCAGCCAGGAGGG  294

seq1  GGCTGTCACTCAACACTGAGTGGAACCTGAGCACTAGGAAACCTCAAAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCACTCAACACTGAGTGGAACCTGAGCACTAGGAAACCTCAAAGC  344

seq1  CTGCCTACAAGGAGACACACTTCCTGCCACAAGGCCACACCTCCTGAGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTACAAGGAGACACACTTCCTGCCACAAGGCCACACCTCCTGAGTT  394

seq1  ACCCAAGTAATGACTGTTTGCCTGCACTTCTAGCTGAGTCTCCTCACTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGTAATGACTGTTTGCCTGCACTTCTAGCTGAGTCTCCTCACTGA  444

seq1  ACCTGAACACCCCACTTAGACTCTCTGGAAAAGATGAGCCGCGAGAAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACACCCCACTTAGACTCTCTGGAAAAGATGAGCCGCGAGAAGAA  494

seq1  CAACTGTCATAGGTACAAACAGAGCGAGTCACCATTGCTTTCTCTTTAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTCATAGGTACAAACAGAGCGAGTCACCATTGCTTTCTCTTTAAG  544

seq1  TTTTAACAAGCCTTCAGCACAGTTAAGTTACTGTGTTATTTTCTTTTAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAAGCCTTCAGCACAGTTAAGTTACTGTGTTATTTTCTTTTAAC  594

seq1  TTCTTCTATTCAATTTCCCATGAATCATTTCCTTGTTGAGATCTAAGTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTATTCAATTTCCCATGAATCATTTCCTTGTTGAGATCTAAGTTT  644

seq1  CTATTTAATATCCCTTCTGCCTAGAGAACTGTTCCTGATAATCTTGAAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAATATCCCTTCTGCCTAGAGAACTGTTCCTGATAATCTTGAAGA  694

seq1  GGGCCTTCTCCAGTGTTCTAGTTGGCTTTTTGGTGCTGTGAGGAGACACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTCTCCAGTGTTCTAGTTGGCTTTTTGGTGCTGTGAGGAGACACT  744

seq1  GACCAAAGCTAGCCTGGGGAGGAAAATGTCCATTTCATCCTATAGGCCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGCTAGCCTGGGGAGGAAAATGTCCATTTCATCCTATAGGCCCA  794

seq1  GGCCACAAGTCCTCATGGAGGGAGGTCAAGGCAGGTCTCAAGGCAGGAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAAGTCCTCATGGAGGGAGGTCAAGGCAGGTCTCAAGGCAGGAGG  844

seq1  TAGGATGTTAAGCAGACAGTATGGATAAGACTGCTCACCAGCTTGCAGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGTTAAGCAGACAGTATGGATAAGACTGCTCACCAGCTTGCAGAT  894

seq1  TGCTGCTCCAGCTGCTGTGTTTGATGCAACACAGACCCACCTGCTGCTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTCCAGCTGCTGTGTTTGATGCAACACAGACCCACCTGCTGCTGA  944

seq1  TGAAACCTTTAATAGTGGACAGGATCTGCCACACCAATCAGTAATCAAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCTTTAATAGTGGACAGGATCTGCCACACCAATCAGTAATCAAGA  994

seq1  TCATTTCTCACAGACATGGCTACAGGACAATCTGATCTGGGTACTTCCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTCACAGACATGGCTACAGGACAATCTGATCTGGGTACTTCCAA  1044

seq1  AATGAGACACTCTCATATGACTAGACTATGTTAAATCTACAGCAGTAGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACACTCTCATATGACTAGACTATGTTAAATCTACAGCAGTAGCT  1094

seq1  AAGTGGAATACCTGGTAAAGAATTC  1122
      |||||||||||||||||||||||||
seq2  AAGTGGAATACCTGGTAAAGAATTC  1119

seq1: chrX_131688125_131689295
seq2: B6Ng01-280E11.g_72_1229

seq1  GAATTCACACACGT-TTATTACTATGAACCCAGAAATTTTCACTAATGCT  49
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACGTCTTATTACTATGAACCCAGAAATTTTCACTAATGCT  50

seq1  TTGAACAGCTTTTAAACTATTAACTTATTATCTTTAATTGTTTGAAAGCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAGCTTTTAAACTATTAACTTATTATCTTTAATTGTTTGAAAGCT  100

seq1  AATAAAAATTTCCATTCTTTCATGGTTATTGACTGTATCTTTCAAAGAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATTTCCATTCTTTCATGGTTATTGACTGTATCTTTCAAAGAAT  150

seq1  TGTCAGGTGTGTCTAGTTTTCACATGAACCCACCATTAATAACAAAACCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGTGTGTCTAGTTTTCACATGAACCCACCATTAATAACAAAACCA  200

seq1  CTGTTAAAATAACCAAAATCTAATAAAGTACATTTGAGAACTGATTTGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAAATAACCAAAATCTAATAAAGTACATTTGAGAACTGATTTGAC  250

seq1  ATTATTGATAGGAAATATATTAATTTATCATACAACAAAATAAGGAAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGATAGGAAATATATTAATTTATCATACAACAAAATAAGGAAGCA  300

seq1  ATGAGCAGTTAAAAAAGACCAAAACTTGAAAGGATATTTCTTCAAAGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGTTAAAAAAGACCAAAACTTGAAAGGATATTTCTTCAAAGACA  350

seq1  ATGAAAAAGCATATCAGGTGCTCAACATTTGTAACTATCAGGGAAATGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAGCATATCAGGTGCTCAACATTTGTAACTATCAGGGAAATGCA  400

seq1  AATGAAAATGAAAAAGAACCCGATGTCTTCACATTCATTGATGACTATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATGAAAAAGAACCCGATGTCTTCACATTCATTGATGACTATTA  450

seq1  CCCTTTCCTAAGAGTGGGACTTTAAAATTACATATTCACCGTGGATCAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCTAAGAGTGGGACTTTAAAATTACATATTCACCGTGGATCAAC  500

seq1  TTGTGTCATTTAATAAAGAAATATATTTAGGAAATACATATACTCATATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCATTTAATAAAGAAATATATTTAGGAAATACATATACTCATATA  550

seq1  ACAAAATTCAATTTTAAAATGAGTCATGAATTTTGAAGGCAGCAAAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTCAATTTTAAAATGAGTCATGAATTTTGAAGGCAGCAAAGAGA  600

seq1  GGCATATGGAATAATTTGGAGGGAGGAAAGGAAATGAGGAAATGATATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATGGAATAATTTGGAGGGAGGAAAGGAAATGAGGAAATGATATAA  650

seq1  TTATAATTTCACATATACAATAAATAATTAATAAACTTTACTTTCTTATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTCACATATACAATAAATAATTAATAAACTTTACTTTCTTATG  700

seq1  TATCTAGTAATTCCATATGTGCATCCTCAAAGGTATTAGAAGAAGAAACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGTAATTCCATATGTGCATCCTCAAAGGTATTAGAAGAAGAAACT  750

seq1  TCAACAAGTATTTTGCAAGGCAATAGACATGGCAATAGTA-TTCATCATA  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCAACAAGTATTTTGCAAGGCAATAGACATGGCAATAGTATTTCATCATA  800

seq1  ATACAAACATGGAACTAAGTCAA-TTTTCACCATACATATGAGTGGATAA  847
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATACAAACATGGAACTAAGTCAATTTTTCACCATACATATGAGTGGATAA  850

seq1  GCAAACAATGACATGTTCTATTAGGAGAATGCTGTTTGTCCTAAAATGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAATGACATGTTCTATTAGGAGAATGCTGTTTGTCCTAAAATGGA  900

seq1  ATGGCAGCATAGTAAACACAAAATGAATGAAACTTGAAATTTTTTGCTAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCATAGTAAACACAAAATGAATGAAACTTGAAATTTTTTGCTAG  950

seq1  AGAAATAATATGACA--CAAAAATACAAATGCACTGTGCCATTCATA-GG  994
      |||||||||||||||   |||||||| |||||||||||||||||||| ||
seq2  AGAAATAATATGACAACAAAAAATAC-AATGCACTGTGCCATTCATAGGG  999

seq1  ATATAGTTAAAATAGTAAAATTAATTCATATACAATCATAGTCACTAGAA  1044
      |||||||||||||||||||| |||||||||||| |||||||||||||| |
seq2  ATATAGTTAAAATAGTAAAA-TAATTCATATAC-ATCATAGTCACTAG-A  1046

seq1  TTTTAGGAGACAGGAGAATGTGAAATTACTTGTCATTGGCAAAGCAGCCC  1094
      |||||||||||||||| ||||| |||||| ||||||  || |||||||| 
seq2  TTTTAGGAGACAGGAG-ATGTG-AATTAC-TGTCAT--GC-AAGCAGCCT  1090

seq1  TTGGAAATGATAAAAAAAAAAAAAAAGCTCTGAAGGTTGATTTTTACTGA  1144
      | |||||||||      || ||||| |||||||  |||||  ||||||||
seq2  TGGGAAATGAT------AACAAAAAGGCTCTGA--GTTGA-CTTTACTGA  1131

seq1  CTTTTCATAATAATACAAATTCTTTTA  1171
      | ||||  |||||||||||||| ||||
seq2  CCTTTCCAAATAATACAAATTCCTTTA  1158