BAC Information

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BAC

Clone NameB6Ng01-280H09
ChromosomeX (Build37)
Map Location 42,281,780 - 42,282,746
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC637141, Wdr40c, Wdr40b, LOC665585
Downstream gene1110059M19Rik, LOC100040038, EG385346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280H09.bB6Ng01-280H09.g
ACCGA080180GA080181
length1,179982
definitionB6Ng01-280H09.b B6Ng01-280H09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaacataggaatctccaatggctgagaagcacctaaagaaatg
ttcaaagtccttagtgatcagagaaatgcaaatcaaaatgcctctgagat
tccaccttataccagtaaaaatgactaagatcaaaacctcaggtgacaag
catgttggcaaggacgttaagaaacaggaaaactcctccattgctggtgg
aattgcaatgtggaacaaccactcttggaaaccaatctggagattcctga
gaaaactgggaatagatctacctgaagatccaccaataccactcttggga
atatagccaaaagacaccctaccatgccacaggggcacttgttccactat
gttcttagtggacttatttgtgatagccagaagctagaaacaacccagat
gttccacaatagaagaatggatacaaaaaatgtgctacatttacacaatg
gaatactactcagctataaaaaacaatgacatcctgagttttgcaggcag
atggatggaaaaagagaatatcatcctgagtgaggtaactgaaacccaaa
atgatatgcatggtatgtactcactaataagttgatattaacccaacaaa
ggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg
aaggaaggaagggaaaaagaaaagtacagaatacagtattgggtaaggca
aaaagactaaagccctgagagccagcagaaagaatggaaacagacaacct
tgagagagaggtggttgcggggaacttacagaatgcaccagagaccttga
tagcaaaagactgtcagggctcaaagggatggaccttagatgtaatgccc
aacagtagggagagggaacttatagagcccacctcaagtagaatgagagg
gcatcaagtgaaagaggtgtttgccaccccaaagtcaaacctctaaaccc
atattttgttcctgtctgaaagaactgcagggatggaatggaagaggagc
ctgaaggaaaacaagtccagtgaccaggcccaaaggtgggatcgagctca
agttctgaacactatactggagggtatgggaactctacaaaaaaatggaa
cctatcatgtcctacatcttggaagaatccaaaggcaggtgaaagagtca
agatgcatgatttggcacccacctaatgt
gaattccagtgtttcatggtattcatctttgggatgcttcctaatccttt
attcatccttttttcctattacactttctcctttataataattttttgga
gaattaatttctaacaccgtggctttaataagtattgcatttttgagtaa
gacagccagggctatacagagaaatcctctcttgaaaaaaccaaaaaaaa
aaaaaaaaaaaaaaaaccctaaataaaaaaaaaataccctaaaaactgag
ccagacagtggtggtgcatgcctttaatcccagcactgtggaggcagagg
caggtggatatctgagttcgaggccagcctggtctacaaagtgagttcca
ggaaacccagggctatacagagaaaccctgtctcaaaaacaaacaaagaa
agaaacaaaaacaaaaaaacaaaaaaaaaaccttaaaaactatcaaaaac
tataactaacaatatcgattaatatttattgatcatctttgagatatagt
ttgaatacaactttttctctcctgtttcccctgcataaccatcccatata
tctctctcatctgcccttcaaattcatggcctctccttttttacttaaat
tgtgattgaatgcatctctatctatctctatctctctctatctctatctc
tatctctatctctatctctatctctatctctatctctatctctatctcta
tctaccagaatgcatactgttgaattgatattattttatgtgcatgtatg
tcttcatgtctgaccatttgacatcctgcttccgggtttatacagatgcc
tatagttcttttttgtagagtttagggcttcatgtgcttttcttctgtga
tgtttgtcatgtttgcttgtatccttctatcagctttctgttttgggtga
tcatgctgaggaatactttatgaagtattacttttcttattgttacttag
aagaacaaatttttaatagcaaacaataaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_42281780_42282746
seq2: B6Ng01-280H09.g_69_1050

seq1  GAATTCCAGTGTTTCATGGTATTCATCTTTGGGATGCTTCCTAATCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTTTCATGGTATTCATCTTTGGGATGCTTCCTAATCCTTT  50

seq1  ATTCATCCTTTTTTCCTATTACACTTTCTCCTTTATAATAATTTTTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCCTTTTTTCCTATTACACTTTCTCCTTTATAATAATTTTTTGGA  100

seq1  GAATTAATTTCTAACACCGTGGCTTTAATAAGTATTGCATTTTTGAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAATTTCTAACACCGTGGCTTTAATAAGTATTGCATTTTTGAGTAA  150

seq1  GACAGCCAGGGCTATACAGAGAAATCCTCTCTTGAAAAAACCAAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGCTATACAGAGAAATCCTCTCTTGAAAAAACCAAAAAAAA  200

seq1  AAAAAAAAAAAAAAAACCCTAAATAAAAAAAAAATACCCTAAAAACTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAACCCTAAATAAAAAAAAAATACCCTAAAAACTGAG  250

seq1  CCAGACAGTGGTGGTGCATGCCTTTAATCCCAGCACTGTGGAGGCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGTGGTGGTGCATGCCTTTAATCCCAGCACTGTGGAGGCAGAGG  300

seq1  CAGGTGGATATCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGATATCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCA  350

seq1  GGAAACCCAGGGCTATACAGAGAAACCCTGTCTCAAAAACAAACAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCCAGGGCTATACAGAGAAACCCTGTCTCAAAAACAAACAAAGAA  400

seq1  AGAAACAAAAACAAAAAAACAAAAAAAAAACCTTAAAAACTATCAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAAAACAAAAAAACAAAAAAAAAACCTTAAAAACTATCAAAAAC  450

seq1  TATAACTAACAATATCGATTAATATTTATTGATCATCTTTGAGATATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTAACAATATCGATTAATATTTATTGATCATCTTTGAGATATAGT  500

seq1  TTGAATACAACTTTTTCTCTCCTGTTTCCCCTGCATAACCATCCCATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACAACTTTTTCTCTCCTGTTTCCCCTGCATAACCATCCCATATA  550

seq1  TCTCTCTCATCTGCCCTTCAAATTCATGGCCTCTCCTTTTTTACTTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCATCTGCCCTTCAAATTCATGGCCTCTCCTTTTTTACTTAAAT  600

seq1  TGTGATTGAATGCATCTCTATCTATCTCTATCTCTCTCTATCTCTATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGAATGCATCTCTATCTATCTCTATCTCTCTCTATCTCTATCTC  650

seq1  TATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTA  700

seq1  TCTACCAGAATGCATACTGTTGAATTGATATTATTTTATGTGCATGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAGAATGCATACTGTTGAATTGATATTATTTTATGTGCATGTATG  750

seq1  TCTTCATGTCTGACCATTTGACATCCTGCTTCCGGGTTTATACAGATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGTCTGACCATTTGACATCCTGCTTCCGGGTTTATACAGATGCC  800

seq1  TATAGTTC-TTTTTGTAGAG-TTAAGGCTTCATGTGCTTTTC-TCTGTGA  847
      |||||||| ||||||||||| ||| ||||||||||||||||| |||||||
seq2  TATAGTTCTTTTTTGTAGAGTTTAGGGCTTCATGTGCTTTTCTTCTGTGA  850

seq1  TGTTTGTCATGTTTGCTTGTATCCTTCTATCAGC-TTCTG-TTTGGGTGA  895
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  TGTTTGTCATGTTTGCTTGTATCCTTCTATCAGCTTTCTGTTTTGGGTGA  900

seq1  TCATGCTGAGG-ATACTTTATG-AGTATACC--TTCTTA-TGTTAC-TAG  939
      ||||||||||| |||||||||| |||||  |  |||||| |||||| |||
seq2  TCATGCTGAGGAATACTTTATGAAGTATTACTTTTCTTATTGTTACTTAG  950

seq1  AAGACAATATT----ATAGCAAACAATAAACA  967
      ||||  | |||    |||||||||||||||||
seq2  AAGAACAAATTTTTAATAGCAAACAATAAACA  982