BAC Information

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BAC

Clone NameB6Ng01-283B11
ChromosomeX (Build37)
Map Location 134,641,619 - 134,775,845
singlet/doubletdoublet
Overlap geneIl1rapl2, 1700025D03Rik
Upstream geneLOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303
Downstream geneNrk, Serpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283B11.bB6Ng01-283B11.g
ACCGA082138GA082139
length9501,120
definitionB6Ng01-283B11.b B6Ng01-283B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,641,619 - 134,642,587)(134,774,720 - 134,775,845)
sequence
gaattctgccaggcttgtggaacaaagagcatatcaaatgggatttcttt
gtggatgctgatggcagtggtaaagtgaaagaggattatttaaatacatg
tttaaatattcaaaagctatatgtgctggcatgtaagtgaactagtattt
cctttccctccagtgaccttgagatcaaactacatttatcaaagttctca
ttttatcctcctttgcactcttcctccaacacctaccggcttttaaacgc
atacttgtcatggctctaatcaatgtagccgttttgttttgttttgtttt
gttttgttttgttttgttttgttttgttttgttttgttttgttttgtttt
attttattttattttattttattttattttattttattttattttttcaa
gtcaggatttctctgtgtaatctcttctttgcagaactctagttgtcctg
caccaacctggcctttaattctgcctgtctctgcctctgctgagattaaa
ggtgtgtgctacaatgtatctggttttgagccactccccacatgatttag
agttcagcatcctcagacctgatttgtttcagtctcatgattttttataa
ctacttttcaggttgaaaattgttagcaaatttaatattcatcatatatg
caaatgtagcatgatctggaatatttcaaggattttttttaaggtacaaa
cttgccttcctgtcattttgaaattggcttgaaacagtgctggccctctg
cttaagtgcttaaccagttgctattgtctctgtaccacacagcatttatg
ttcctgataccatttgctactttctagagtctgtcaccatgttcctttta
aatagcattgaaaataaagttgtagtatatgcacagatggctcacagaca
ttttctctatctagagaataaacttgagtattatgggcataaccatggtt


gaattcactggagggttactgattgtttggattcagccatacaaatattt
tcccatttatttatttatttatttatttatttatttatttatttatttat
ttattattttcatcttcagcagagaacaggttgctagggtttgttattta
tttatttatttattattttcatcttcagcagagaacaggttgctagggtt
tgtttcctaaatggagaatgctcatttctaaaaggctgcacaaaagcatt
tgtttatgaatgattcaccaggtgaataagtcaactcatgttggatttct
ccttttgtttctttttaaagtctcagtaatttatgtctctcttcaacctt
cttaaggcagacctctgctcaccccaggaactctcttccattatcttgct
catcttctctcattcctttcctgcttcttccattatcacctgatctgcat
cttcaccttctaaggcccaaatttcccatcttatctgattacttcaacta
gtcctctccacaaatgccctgtgagaataaaggggaaaatcctacaaaat
tgcaaacagccacataaaatatgctgtgggaaataaaactattagctatg
ggcacattgagcacatgatctaaacatgcaattgtgtatgttttctgttc
tatcttattacatatgcatatgcagcttcaaaggaaataaaaagaaattt
ataataatgttgtacaagtatgctgtgatttatataataaatatgttgca
ggaacttggattttagacgaatcccattttgcaataagaaagctatttcg
agaaattgtattgaaaatgtttcatataggaaatcttttcgttatcaaag
gttagctttctaacttatcattttttaatatctggacattttaaaatttg
atctccttaaattaaccagcacttaacatttgttttattgaagacatgtt
ttattagatttataaattttcaataacagtgggggagatagccttctaaa
ttgataatcttataaatatgtacacttacaacacacatctaactttaacc
tacataattttatatacaatactattatttccatatgaaatttctggccc
catgtcttatggctactaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_134641619_134642587
seq2: B6Ng01-283B11.b_43_992

seq1  GAATTCTGCCAGGCTTGTGGAACAAAGAGCATATCAAATGGGATTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCAGGCTTGTGGAACAAAGAGCATATCAAATGGGATTTCTTT  50

seq1  GTGGATGCTGATGGCAGTGGTAAAGTGAAAGAGGATTATTTAAATACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCTGATGGCAGTGGTAAAGTGAAAGAGGATTATTTAAATACATG  100

seq1  TTTAAATATTCAAAAGCTATATGTGCTGGCATGTAAGTGAACTAGTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATTCAAAAGCTATATGTGCTGGCATGTAAGTGAACTAGTATTT  150

seq1  CCTTTCCCTCCAGTGACCTTGAGATCAAACTACATTTATCAAAGTTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCTCCAGTGACCTTGAGATCAAACTACATTTATCAAAGTTCTCA  200

seq1  TTTTATCCTCCTTTGCACTCTTCCTCCAACACCTACCGGCTTTTAAACGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCTCCTTTGCACTCTTCCTCCAACACCTACCGGCTTTTAAACGC  250

seq1  ATACTTGTCATGGCTCTAATCAATGTAGCCGTTTTGTTTTGTTTTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTCATGGCTCTAATCAATGTAGCCGTTTTGTTTTGTTTTGTTTT  300

seq1  GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG----  346
      ||||||||||||||||||||||||||||||||||||||||||||||    
seq2  GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT  350

seq1  -TTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTTCAA  395
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTTCAA  400

seq1  GTCAGGATTTCTCTGTGTAATCTCTTCTTTGCAGAACTCTAGTTGTCCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGATTTCTCTGTGTAATCTCTTCTTTGCAGAACTCTAGTTGTCCTG  450

seq1  CACCAACCTGGCCTTTAATTCTGCCTGTCTCTGCCTCTGCTGAGATTAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACCTGGCCTTTAATTCTGCCTGTCTCTGCCTCTGCTGAGATTAAA  500

seq1  GGTGTGTGCTACAATGTATCTGGTTTTGAGCCACTCCCCACATGATTTAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGCTACAATGTATCTGGTTTTGAGCCACTCCCCACATGATTTAG  550

seq1  AGTTCAGCATCCTCAGACCTGATTTGTTTCAGTCTCATGATTTTTTATAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGCATCCTCAGACCTGATTTGTTTCAGTCTCATGATTTTTTATAA  600

seq1  CTACTTTTCAGGTTGAAAATTGTTAGCAAATTTAATATTCATCATATATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTCAGGTTGAAAATTGTTAGCAAATTTAATATTCATCATATATG  650

seq1  CAAATGTAGCATGATCTGGAATATTTCAAGGATTTTTTTTAAGGTACAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAGCATGATCTGGAATATTTCAAGGATTTTTTTTAAGGTACAAA  700

seq1  CTTGCCTTCCTGTCATTTTGAAATTGGCTTGAAACAGTGCTGGCCCTCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTCCTGTCATTTTGAAATTGGCTTGAAACAGTGCTGGCCCTCTG  750

seq1  CTTAAGTGCTTAACCAGTTGCTATTGTCTCTGTACCACACAGCATTTATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTGCTTAACCAGTTGCTATTGTCTCTGTACCACACAGCATTTATG  800

seq1  TTCCTGATAACCCATTTGCTACTTTCTAGAGTCTGTCACCATGTTCCTTT  845
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATA--CCATTTGCTACTTTCTAGAGTCTGTCACCATGTTCCTTT  848

seq1  TAAAAATAGCATTGAAAAATAAAAGTTTGTAGTAATAATGCACAGAATGG  895
      |  ||||||||||| ||||||||   ||||||||   |||||||| ||||
seq2  T--AAATAGCATTG-AAAATAAA--GTTGTAGTA--TATGCACAG-ATGG  890

seq1  CTCACAGACCATTTTTCTTCCTTAATCTAGAGAAAATAAACCTTTGGAGT  945
      |||||||||  ||| |||      ||||||||  |||||||   | ||||
seq2  CTCACAGACATTTTCTCT------ATCTAGAG--AATAAAC---TTGAGT  929

seq1  ATATATGGGCATACACCCATGGTT  969
      || |||||||||  | ||||||||
seq2  AT-TATGGGCAT--AACCATGGTT  950


seq1: chrX_134774720_134775845
seq2: B6Ng01-283B11.g_66_1185 (reverse)

seq1  TCTAGTAGCATAAAGACATGGGG-CAGAAATTTCAATATGGAAATAATAG  49
      |||||||||   ||||||||||| |||||||||| |||||||||||||||
seq2  TCTAGTAGCCATAAGACATGGGGCCAGAAATTTC-ATATGGAAATAATAG  49

seq1  TATTTGTTAATTATAAAATTATGTAGGTTAAGGTTAGATGGTGTGTTGTA  99
      || ||||    |||||||||||||||||||| ||||||| ||||||||||
seq2  TA-TTGT---ATATAAAATTATGTAGGTTAAAGTTAGAT-GTGTGTTGTA  94

seq1  AGTGTACATATTTTATAAGATTATCAATTTTAGAAGGCTATCT-CCCCAC  148
      |||||||||| |||||||||||||||| ||||||||||||||| ||||||
seq2  AGTGTACATA-TTTATAAGATTATCAA-TTTAGAAGGCTATCTCCCCCAC  142

seq1  TGTTATTTGAAAATTTATAAATCTAAT-AAACATGTCTTCAATAAAACAA  197
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTTA-TTGAAAATTTATAAATCTAATAAAACATGTCTTCAATAAAACAA  191

seq1  ATGTTAAGTGCTGGTTAATTTAAGGAGATCAAATTTTAAAATGTCCAGAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAGTGCTGGTTAATTTAAGGAGATCAAATTTTAAAATGTCCAGAT  241

seq1  ATTAAAAAATGATAAGTTAGAAAGCTAACCTTTGATAACGAAAAGATTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAATGATAAGTTAGAAAGCTAACCTTTGATAACGAAAAGATTTC  291

seq1  CTATATGAAACATTTTCAATACAATTTCTCGAAATAGCTTTCTTATTGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGAAACATTTTCAATACAATTTCTCGAAATAGCTTTCTTATTGCA  341

seq1  AAATGGGATTCGTCTAAAATCCAAGTTCCTGCAACATATTTATTATATAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGATTCGTCTAAAATCCAAGTTCCTGCAACATATTTATTATATAA  391

seq1  ATCACAGCATACTTGTACAACATTATTATAAATTTCTTTTTATTTCCTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCATACTTGTACAACATTATTATAAATTTCTTTTTATTTCCTTT  441

seq1  GAAGCTGCATATGCATATGTAATAAGATAGAACAGAAAACATACACAATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGCATATGCATATGTAATAAGATAGAACAGAAAACATACACAATT  491

seq1  GCATGTTTAGATCATGTGCTCAATGTGCCCATAGCTAATAGTTTTATTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTAGATCATGTGCTCAATGTGCCCATAGCTAATAGTTTTATTTC  541

seq1  CCACAGCATATTTTATGTGGCTGTTTGCAATTTTGTAGGATTTTCCCCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCATATTTTATGTGGCTGTTTGCAATTTTGTAGGATTTTCCCCTT  591

seq1  TATTCTCACAGGGCATTTGTGGAGAGGACTAGTTGAAGTAATCAGATAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCACAGGGCATTTGTGGAGAGGACTAGTTGAAGTAATCAGATAAG  641

seq1  ATGGGAAATTTGGGCCTTAGAAGGTGAAGATGCAGATCAGGTGATAATGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAATTTGGGCCTTAGAAGGTGAAGATGCAGATCAGGTGATAATGG  691

seq1  AAGAAGCAGGAAAGGAATGAGAGAAGATGAGCAAGATAATGGAAGAGAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAGGAAAGGAATGAGAGAAGATGAGCAAGATAATGGAAGAGAGT  741

seq1  TCCTGGGGTGAGCAGAGGTCTGCCTTAAGAAGGTTGAAGAGAGACATAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGTGAGCAGAGGTCTGCCTTAAGAAGGTTGAAGAGAGACATAAA  791

seq1  TTACTGAGACTTTAAAAAGAAACAAAAGGAGAAATCCAACATGAGTTGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAGACTTTAAAAAGAAACAAAAGGAGAAATCCAACATGAGTTGAC  841

seq1  TTATTCACCTGGTGAATCATTCATAAACAAATGCTTTTGTGCAGCCTTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACCTGGTGAATCATTCATAAACAAATGCTTTTGTGCAGCCTTTT  891

seq1  AGAAATGAGCATTCTCCATTTAGGAAACAAACCCTAGCAACCTGTTCTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAGCATTCTCCATTTAGGAAACAAACCCTAGCAACCTGTTCTCT  941

seq1  GCTGAAGATGAAAATAATAAATAAATAAATAAATAACAAACCCTAGCAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGATGAAAATAATAAATAAATAAATAAATAACAAACCCTAGCAAC  991

seq1  CTGTTCTCTGCTGAAGATGAAAATAATAAATAAATAAATAAATAAATAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCTGCTGAAGATGAAAATAATAAATAAATAAATAAATAAATAAA  1041

seq1  TAAATAAATAAATAAATAAATAAATGGGAAAATATTTGTATGGCTGAATC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAATAAATGGGAAAATATTTGTATGGCTGAATC  1091

seq1  CAAACAATCAGTAACCCTCCAGTGAATTC  1126
      |||||||||||||||||||||||||||||
seq2  CAAACAATCAGTAACCCTCCAGTGAATTC  1120


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