BAC Information

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BAC

Clone NameB6Ng01-283M06
ChromosomeX (Build37)
Map Location 4,119,366 - 4,120,314
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668957, LOC100043932, OTTMUSG00000016406, LOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961, LOC100042159, LOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057
Downstream geneEG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724, LOC100043935, LOC668968, LOC546182, Mycs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283M06.bB6Ng01-283M06.g
ACCGA082641GA082642
length1,2001,123
definitionB6Ng01-283M06.b B6Ng01-283M06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgtttagttctgagccccattttaaatgaggttatttgattt
tctggagtctaccttcttgagttctttatatatattagatattcgtaccc
tatctgatttaggatatgtaaagatcctttcccaatcttttggtggccta
tttttcttattgacggtgtcttttgccttacaaaagctttgcaattttat
gaggtcctatttgtcgatattcagtcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttcgatgctttttccccac
tttctcctctataagtttcagtgtctcaggttttatgtggagttccttga
tccaattagatttgaccttagtacaaggtgataggaatggatcaattcac
attcttctacatgttaactgccagttgtgacagcacgatttgttgaaaat
gctgtctttttttccagtggatggttttagctcccttgtcaaagatcacg
tgaccacatccaatatatatataaagaactcaagaaggtggactccagat
aatcaaataaccccataaaacatggggctcagagctaaacaaataattct
cacctgaggaataccgaatggctgacaagcacctgaaaaaatgttcagta
tccttaatcatcagggaaacacaaatcaaaataaacctgagtttccacct
cacaacagtcagaatggctaagataaaaaaatcaggtgacaacagatgct
ggcgaggatggatgagaaaaactactccattgttggtgggattgcaagct
tgtacaaccactctggaaatcattcaggcagttcctcagaaaactggaca
tagtactaccgggaggatcccacaatacctctcctgggcatatatccaga
agatgttccaacaggtaaaaaggacaaatgtttccactatgttcatagag
cctttatttataatagccagaagctgggaaaagaacccagatacccttca
acaatgaaatgggatacagaaatgtggtacatttacaccaatgggagtta
ctaatctgcttataaaagaattgattttataattccctcggccaattgat
ggaaccctggaggcatcattctgagtgaagttacgagtacgagtagctca
caagatggtactccactgattaggtgggaatatttatggcctcatacata

gaattctcagctttactggctttattgtgcaaaccttgttccttgattta
aaattacaggttaaatacaattagctacaaccatttactggaagattaaa
ggtttggagtgacctgaatgcaagagagacagagaagaggagaggaagaa
caggagagaagaggaagccaccatgggggagaggaaccatgaacacttgg
ccataagaaacaacaagtatctgggatcctttgctagggaagtagctagg
ccagcaattagtagattaggggtgatcccccagtaattaccaatgccaaa
ttaaataaccatagtctgagtctcatttatgtgtaaactcataggggata
gcttaaattggttgtattctagactttatatgggtgtagtagctcctgac
attactagaagacaccatctcataaaagtccctgcttctctgactattat
aatctttctgcaagaggaaaattatgactagtactggaaacctagtcatc
tgctcaaagctagtgatgtcatggatcttggaggaaaacctacaactgtc
attttactaaaccagcataatccctaactacattgcaagtatttgtcctt
atctccacagataagtgtaacccttactcctcattaaggtcatagaagcc
tctctgaattagagaccattagatttaaaaaaagcaaattataacaacaa
ctagtcaaatgtggaacacacttttaatctcagcactaggaagctagaag
caggcaatgagttcgaggtctgattggtctacatggtgtgttccaggaca
gcgtgagctacgtagtgagaccctgtctcaaaacaaaattgcaaacaaac
aaaaaactaaatataaaacagaacaacaaaaacctaatgtattacaaaat
gtttataatgggccagttctactcagtaggaaattttgtatatttccatt
acaactgaactcaaaatcattgcatctactcctataggaacttaaaagga
aacaacttagttttctgttgtttgcttactttgttttgttttgagaagaa
gactccactgggtgtagccttactagctgcctcagaattcacagaaggtc
actgctctgctgttctgagtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_4119366_4120314
seq2: B6Ng01-283M06.g_245_1187

seq1  GAGGAACCATGAACACATGGCCATAAGAAACAACAAGTATCTGGGATCCA  50
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  GAGGAACCATGAACACTTGGCCATAAGAAACAACAAGTATCTGGGATCCT  50

seq1  TTGCTAGGGAAGTAGCTAGGCCAGCAATTAGTAGATTAGGGGTGATCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGGGAAGTAGCTAGGCCAGCAATTAGTAGATTAGGGGTGATCCCC  100

seq1  CAGTAATTACCAATGCCAAATTAAATAACCATAGTCTGAGTCTCATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTACCAATGCCAAATTAAATAACCATAGTCTGAGTCTCATTTAT  150

seq1  GTGTAAACTCATAGGGGATAGCTTAAATTGGTTGTATTCTAGACTTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAACTCATAGGGGATAGCTTAAATTGGTTGTATTCTAGACTTTATA  200

seq1  TGGGTGTAGTAGCTCCTGACATTACTAGAAGACACCATCTCATAAAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTAGTAGCTCCTGACATTACTAGAAGACACCATCTCATAAAAGTC  250

seq1  CCTGCTTCTCTGACTATTATAATCTTTCTGCAAGAGGAAAATTATGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCTCTGACTATTATAATCTTTCTGCAAGAGGAAAATTATGACTA  300

seq1  GTACTGGAAACCTAGTCATCTGCTCAAAGCTAGTGATGTCATTGATCTTG  350
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTACTGGAAACCTAGTCATCTGCTCAAAGCTAGTGATGTCATGGATCTTG  350

seq1  GAGGAAAACCTACAACTGTCATTTTACTAAACCAGCACAATCCCTTACTA  400
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  GAGGAAAACCTACAACTGTCATTTTACTAAACCAGCATAATCCCTAACTA  400

seq1  CATTGCAAGTATTTGTTCTTATCTCCACAGATAAGTGTAACCCTTACTCC  450
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATTGCAAGTATTTGTCCTTATCTCCACAGATAAGTGTAACCCTTACTCC  450

seq1  TCATTAAGGTCATAGAAGCCTCTCTGAATTAGAGACCATTAGATTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TCATTAAGGTCATAGAAGCCTCTCTGAATTAGAGACCATTAGATTT--AA  498

seq1  AAAAAGCAAATTATAACAACAACTAGTCAAATGTGGAACACACTTTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAAATTATAACAACAACTAGTCAAATGTGGAACACACTTTTAAT  548

seq1  CTCAGCACTAGGAAGGCAGAAGCAGGCAATGAGTTCGAGGTCTGATTGGT  600
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  CTCAGCACTAGGAAGCTAGAAGCAGGCAATGAGTTCGAGGTCTGATTGGT  598

seq1  CTACATAGTGTGTTCCAGGACAGCGTGAGCTACGTAGTGAGACCCTGTCT  650
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGTGTGTTCCAGGACAGCGTGAGCTACGTAGTGAGACCCTGTCT  648

seq1  CAAAACAAAATTGCAAACAAACAAAAAACTAAATATAAAACAGAACAACA  700
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  CAAAACAAAATTGCAAACAAACAAAAAACTAAATATAAAACAG---AACA  695

seq1  ACAAAAACCTAATGTATTACAAAATGTTTATAAT-GGCCAGTTCTACTCA  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAAAAACCTAATGTATTACAAAATGTTTATAATGGGCCAGTTCTACTCA  745

seq1  GTAGGAAATTTTGTATATTTCCATTACAACTGAACTCAAAATCATTGCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAGGAAATTTTGTATATTTCCATTACAACTGAACTCAAAATCATTG-CA  794

seq1  TCTACTCCTATAGGAACTTAAAAGGAAACAACCTTAGTTTTTCTGTTTGT  849
      ||||||||||||||||||||||||||||||| ||||| ||||||| ||||
seq2  TCTACTCCTATAGGAACTTAAAAGGAAACAA-CTTAG-TTTTCTG-TTGT  841

seq1  TTGCTTATTTTGTTTTGTTTTGAGACAGAGACT-CACT--GTGTAGCC-T  895
      ||||||| |||||||||||||||||   ||||| ||||  |||||||| |
seq2  TTGCTTACTTTGTTTTGTTTTGAGAAGAAGACTCCACTGGGTGTAGCCTT  891

seq1  ACTAGGCTGGCCTCAG-ATTCACAGAGGTCCACCTGCCTCTGCTG-TCTG  943
      |||| ||| ||||||| ||||||||| |  || ||| |||||||| ||||
seq2  ACTA-GCT-GCCTCAGAATTCACAGAAGGTCA-CTG-CTCTGCTGTTCTG  937

seq1  AGTGCT  949
      ||||||
seq2  AGTGCT  943