BAC Information

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BAC

Clone NameB6Ng01-284D06
ChromosomeX (Build37)
Map Location 164,428,045 - 164,577,917
singlet/doubletdoublet
Overlap geneFrmpd4
Upstream geneLOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566, Msl31, Arhgap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284D06.bB6Ng01-284D06.g
ACCGA082966GA082967
length1,1161,117
definitionB6Ng01-284D06.b B6Ng01-284D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,428,045 - 164,429,166)(164,576,802 - 164,577,917)
sequence
gaattcctcatcatttttttcttcttccctcctgttaataccagctttgg
gttcagtgtctggatgtattctgccattcagagcttgctcttatagatca
ggacacatactgtccatcaacagtataacataccctgcataccaaacttc
ttctgcctgaagagtagttgctttctcaagcttataagatccttgacctt
agagttccttggacttttccatgcttctttgatcctgcctatgatctaac
cataatctgattcactgcctctgaatagcaaaacaaagaaggtaaaacaa
atctatcttttcaaaagaggagaatcaatcaagcacaggacatcccatca
ctatgttcataaaaaggcatagctgttgatgggagatacagtatacccag
tagacaaagaaatgaattgagacagcccttgttctgaatccacatacgaa
ttttcacagaaaactgtgtgctagacggtgatatattctctgaagatgaa
atcacctcaattacctgatttttttttaattaaaaaaaaacagatttagt
ttggggatcagggttatgtttcattttgagatagttgcatatatctaagg
ctgaactacaactttctaggcagctaaggatgacattgatctcttgttcc
tcatgcttccaactccagaacacagaagtctgcaatatgccattatatcc
agtttaggcagtgttggtaatctaaaagacggccatatgcttacctagct
gtcaactatgctataccccagggccaagggttttagttgtaatagtaaat
gtttacatataatctaatgatttaaaatttgttcaagggggagaaattat
tctaggacaaaaatgttttgtttatatacagcagtcttgacctttcaaaa
ctgaggactagactccaggctgaagcaaatgagccctactttaaaggccc
cctgaatacctgccagccacctctctactagatccttgagtaagatcact
aataagagcccttgaagagcacagtattagcagcagccacatttcgcaac
gttccatgtcaaggcttttttttgttctcattcttacaacagtctcacca
cagagggagccattat
gaattcctggagatggagctataggtagttgtgattcatctgatacaggt
gatggaaatcaaaccctagtcctctggaacagtgatacagacttttcatt
gacgagccctatccccaaacctttaaaagatttttaatgcaaaggataat
agtaatagttcaaggtttgagggctgctttcagagactggaagcaatgag
gaatgagattaatgttaggtcatcaatatagaaagtgtcctattagaagg
actggggaaggggctttcttctccactgaaaagaggaagaaagcagtctt
gttgaagaggcaacaggagtctgctctgttcctcaaaataaacatgaatc
agacagaattttttttcttccatgctgcatgtgtgtgtgtgtgtttgcct
ctgtgtgaacagtgaatggctcaataaatattaattgagtgaattaatca
gtaaagtattaaatcaatacatgaaggagagctcagaaacctggaatgaa
ttgttccaagtcagtcagttttgtacatgcatcttacttaaagttcacca
tcctaatagtcttcaggacttgagcaatttatccatcaagcagaagtggt
gctattcaaagtggtttgattagtttttgtctaggcctgggccaaagtgc
aggaactttttttttttttttttaacagcagacagcataaaagtgaaagt
gaatctgagaggtttaaaatatgtccaaaaatgctaaaatatctctcagg
caaatggtatgttcttccttcctccctttctttctttctttctttctttt
ttctttctttcaaatcattgcataagaattcaaaatattattgcatgata
acatatattatgacaatctgcatttataggatctttaaaatgatcccttt
cgtcttttttcttactgtagctcatcacaccagatggagattaagaagga
aggtcataattataactccctccattagctaaattttgggtatggttcta
gaacactgcaggcaggagggtagggataaggataaagaatacttagatga
tatggagctagtgacgggtcagttagcaaatgcagttgtaacttcaataa
agctcaatctgctgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_164428045_164429166
seq2: B6Ng01-284D06.b_46_1161

seq1  GAATTCCTCATCATTTTTTTCTTCTTCCCTCCTGTTAATACCAGCTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATCATTTTTTTCTTCTTCCCTCCTGTTAATACCAGCTTTGG  50

seq1  GTTCAGTGTCTGGATGTATTCTGCCATTCAGAGCTTGCTCTTATAGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGTCTGGATGTATTCTGCCATTCAGAGCTTGCTCTTATAGATCA  100

seq1  GGACACATACTGTCCATCAACAGTATAACATACCCTGCATACCAAACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACATACTGTCCATCAACAGTATAACATACCCTGCATACCAAACTTC  150

seq1  TTCTGCCTGAAGAGTAGTTGCTTTCTCAAGCTTATAAGATCCTTGACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTGAAGAGTAGTTGCTTTCTCAAGCTTATAAGATCCTTGACCTT  200

seq1  AGAGTTCCTTGGACTTTTCCATGCTTCTTTGATCCTGCCTATGATCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCTTGGACTTTTCCATGCTTCTTTGATCCTGCCTATGATCTAAC  250

seq1  CATAATCTGATTCACTGCCTCTGAATAGCAAAACAAAGAAGGTAAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCTGATTCACTGCCTCTGAATAGCAAAACAAAGAAGGTAAAACAA  300

seq1  ATCTATCTTTTCAAAAGAGGAGAATCAATCAAGCACAGGACATCCCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTTTTCAAAAGAGGAGAATCAATCAAGCACAGGACATCCCATCA  350

seq1  CTATGTTCATAAAAAGGCATAGCTGTTGATGGGAGATACAGTATACCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTCATAAAAAGGCATAGCTGTTGATGGGAGATACAGTATACCCAG  400

seq1  TAGACAAAGAAATGAATTGAGACAGCCCTTGTTCTGAATCCACATACGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAAGAAATGAATTGAGACAGCCCTTGTTCTGAATCCACATACGAA  450

seq1  TTTTCACAGAAAACTGTGTGCTAGACGGTGATATATTCTCTGAAGATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGAAAACTGTGTGCTAGACGGTGATATATTCTCTGAAGATGAA  500

seq1  ATCACCTCAATTACCTGATTTTTTTTTAATTAAAAAAAAACAGATTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTCAATTACCTGATTTTTTTTTAATTAAAAAAAAACAGATTTAGT  550

seq1  TTGGGGATCAGGGTTATGTTTCATTTTGAGATAGTTGCATATATCTAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATCAGGGTTATGTTTCATTTTGAGATAGTTGCATATATCTAAGG  600

seq1  CTGAACTACAACTTTCTAGGCAGCTAAGGATGACATTGATCTCTTGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTACAACTTTCTAGGCAGCTAAGGATGACATTGATCTCTTGTTCC  650

seq1  TCATGCTTCCAACTCCAGAACACAGAAGTCTGCAATATGCCATTATATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTCCAACTCCAGAACACAGAAGTCTGCAATATGCCATTATATCC  700

seq1  AGTTTAGGCAGTGTTGGTAATCTAAAAGACGGCCATATGCTTACCTAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGGCAGTGTTGGTAATCTAAAAGACGGCCATATGCTTACCTAGCT  750

seq1  GTCAACTATGCTATACCCCAGGGCCAAGGGTTTTAGTTGTAATAGTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTATGCTATACCCCAGGGCCAAGGGTTTTAGTTGTAATAGTAAAT  800

seq1  GTTTACATATAATCTAATGATTTAAAATTTGTTCAAGGGGGAGAAATTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACATATAATCTAATGATTTAAAATTTGTTCAAGGGGGAGAAATTAT  850

seq1  TCTAGGACAAAAATGTTTTGTTTATATACAGCAGTCTTGACC-TTCAAAA  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTAGGACAAAAATGTTTTGTTTATATACAGCAGTCTTGACCTTTCAAAA  900

seq1  CTGAGGACTAGACTCCAGGCTGAAGCAAATGAGCCCTACTTT-AAGGCCC  948
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGAGGACTAGACTCCAGGCTGAAGCAAATGAGCCCTACTTTAAAGGCCC  950

seq1  CCTGAATACCTGCCAGCCACCTCTCTACTAAGATCCTTGAGTAAGATCAC  998
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTGAATACCTGCCAGCCACCTCTCTACT-AGATCCTTGAGTAAGATCAC  999

seq1  TAAATAAGAGCCCCTGAAAGAGCACAGTAATAGCAGCAGCCCACATTTCG  1048
      | ||||||||||| || |||||||||||| ||||||||| ||||||||||
seq2  T-AATAAGAGCCCTTG-AAGAGCACAGTATTAGCAGCAG-CCACATTTCG  1046

seq1  CCAAACGTTCCCATGTCCAAAGGC-TTTTTTTGTCTTCATTCCTTACAAC  1097
      |  |||||| |||||||  ||||| |||||||||  ||||| ||||||||
seq2  C--AACGTT-CCATGTC--AAGGCTTTTTTTTGTTCTCATT-CTTACAAC  1090

seq1  AGTCTCA-CACAGAGGGAGCCATTAT  1122
      ||||||| ||||||||||||||||||
seq2  AGTCTCACCACAGAGGGAGCCATTAT  1116

seq1: chrX_164576802_164577917
seq2: B6Ng01-284D06.g_68_1184 (reverse)

seq1  CCCCAGCAGA-TGAGCTTTATTTGAGGTTAACAACTGCATTTGCTACCTG  49
      |||||||||| ||||||||| |||| ||| |||||||||||||||| |||
seq2  CCCCAGCAGATTGAGCTTTA-TTGAAGTT-ACAACTGCATTTGCTAACTG  48

seq1  CACCTTTCACTAAGCTCATTAATTCATCTAATTTATCTTTTATCTTTATC  99
       |||  ||||| |||||  ||  ||||||||  |||  |||||| |||||
seq2  -ACCCGTCACT-AGCTCCATA--TCATCTAA-GTATTCTTTATCCTTATC  93

seq1  CCTACCCTCTTGCCTGCAGTGTTCTAGAA-CATA-CCAAAATTTAGCTAA  147
      ||||||||| ||||||||||||||||||| |||| |||||||||||||||
seq2  CCTACCCTCCTGCCTGCAGTGTTCTAGAACCATACCCAAAATTTAGCTAA  143

seq1  TGGA-GGAG-TATAATTATGACCTTCCTTCTTAATCT-CATCTGGTGTGA  194
      |||| |||| ||||||||||||||||||||||||||| ||||||||||||
seq2  TGGAGGGAGTTATAATTATGACCTTCCTTCTTAATCTCCATCTGGTGTGA  193

seq1  TGAGCTACAGTAAG-AAAAAGACG-AAGGGATCATTTTAAAGATCCTATA  242
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  TGAGCTACAGTAAGAAAAAAGACGAAAGGGATCATTTTAAAGATCCTATA  243

seq1  AATGCAGATTGTCATAATATATGTTATCATGCAATAATATTTTGAATTCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGATTGTCATAATATATGTTATCATGCAATAATATTTTGAATTCT  293

seq1  TATGCAATGATTTGAAAGAAAGAAAAAAGAAAGAAAGAAAGAAAGAAAGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATGATTTGAAAGAAAGAAAAAAGAAAGAAAGAAAGAAAGAAAGG  343

seq1  GAGGAAGGAAGAACATACCATTTGCCTGAGAGATATTTTAGCATTTTTGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGAAGAACATACCATTTGCCTGAGAGATATTTTAGCATTTTTGG  393

seq1  ACATATTTTAAACCTCTCAGATTCACTTTCACTTTTATGCTGTCTGCTGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTAAACCTCTCAGATTCACTTTCACTTTTATGCTGTCTGCTGT  443

seq1  TAAAAAAAAAAAAAAAAAGTTCCTGCACTTTGGCCCAGGCCTAGACAAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAAAAAAGTTCCTGCACTTTGGCCCAGGCCTAGACAAAA  493

seq1  ACTAATCAAACCACTTTGAATAGCACCACTTCTGCTTGATGGATAAATTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCAAACCACTTTGAATAGCACCACTTCTGCTTGATGGATAAATTG  543

seq1  CTCAAGTCCTGAAGACTATTAGGATGGTGAACTTTAAGTAAGATGCATGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCCTGAAGACTATTAGGATGGTGAACTTTAAGTAAGATGCATGT  593

seq1  ACAAAACTGACTGACTTGGAACAATTCATTCCAGGTTTCTGAGCTCTCCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTGACTGACTTGGAACAATTCATTCCAGGTTTCTGAGCTCTCCT  643

seq1  TCATGTATTGATTTAATACTTTACTGATTAATTCACTCAATTAATATTTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTATTGATTTAATACTTTACTGATTAATTCACTCAATTAATATTTA  693

seq1  TTGAGCCATTCACTGTTCACACAGAGGCAAACACACACACACACATGCAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCATTCACTGTTCACACAGAGGCAAACACACACACACACATGCAG  743

seq1  CATGGAAGAAAAAAAATTCTGTCTGATTCATGTTTATTTTGAGGAACAGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGAAAAAAAATTCTGTCTGATTCATGTTTATTTTGAGGAACAGA  793

seq1  GCAGACTCCTGTTGCCTCTTCAACAAGACTGCTTTCTTCCTCTTTTCAGT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTCCTGTTGCCTCTTCAACAAGACTGCTTTCTTCCTCTTTTCAGT  843

seq1  GGAGAAGAAAGCCCCTTCCCCAGTCCTTCTAATAGGACACTTTCTATATT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAAAGCCCCTTCCCCAGTCCTTCTAATAGGACACTTTCTATATT  893

seq1  GATGACCTAACATTAATCTCATTCCTCATTGCTTCCAGTCTCTGAAAGCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCTAACATTAATCTCATTCCTCATTGCTTCCAGTCTCTGAAAGCA  943

seq1  GCCCTCAAACCTTGAACTATTACTATTATCCTTTGCATTAAAAATCTTTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCAAACCTTGAACTATTACTATTATCCTTTGCATTAAAAATCTTTT  993

seq1  AAAGGTTTGGGGATAGGGCTCGTCAATGAAAAGTCTGTATCACTGTTCCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTGGGGATAGGGCTCGTCAATGAAAAGTCTGTATCACTGTTCCA  1043

seq1  GAGGACTAGGGTTTGATTTCCATCACCTGTATCAGATGAATCACAACTAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTAGGGTTTGATTTCCATCACCTGTATCAGATGAATCACAACTAC  1093

seq1  CTATAGCTCCATCTCCAGGAATTC  1116
      ||||||||||||||||||||||||
seq2  CTATAGCTCCATCTCCAGGAATTC  1117