BAC Information

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BAC

Clone NameB6Ng01-284G03
ChromosomeX (Build37)
Map Location 3,646,867 - 3,786,524
singlet/doubletdoublet
Overlap geneLOC100042159, LOC100042168
Upstream geneLOC385516, LOC434721, LOC668957, LOC100043932, OTTMUSG00000016406, LOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961
Downstream geneLOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724, LOC100043935
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284G03.bB6Ng01-284G03.g
ACCGA083100GA083101
length1,096233
definitionB6Ng01-284G03.b B6Ng01-284G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,646,867 - 3,647,979)(3,786,292 - 3,786,524)
sequence
gaattcattgctaaccctattgtccaaagcacatgacaacagtaaagatc
ctatcttgcccctcccaccatatgattaacgtcattaataaattttctgc
tgtctcaagcaaattcattggaggttaaataccttaacattcagctggat
ggtgatggctcatgcctttaatcccagaactcaggaggcaaatctaggca
tatctctgagtttgaggtcagcctggtctatatagtatgtctcaggacag
ccagggctacagggagagatcctgtcttggaaaacaaataaaataataca
aatataaatataaacaaaacaatgcaacattcttaactggaaagtatttg
gctatagatgctgaatgaaagccttttctaaagctaaactatatgctgtc
agcaattggtaatttatctccacaatacaataataagaaatactgaaact
atgtgtacttccgtctgatagcacataagtcattaatataccatacagaa
tcaaaaataattgtcagggtattccttctaaataaaataataataataaa
aataattccttctaaaggctcggaataatttgtcctgtgtgtcctttgct
tccacttttttttttcttcaacacaaccaaagtacttttcacaaagaaaa
tagttataaattggagccttggaccctttgtttaatgccttaaatacccc
ttgagtaggatgggctgttttgtgaaatacttgtgatcattctattgagc
atagatgcctaaaatctctagctaccaagctcaatggaggcaaaggctac
tggagacatgtgggtcttgtgtctcatttggagtgaggatcaacatgatg
ttagttatacacacattaaattatatttccacatcagagtgcatcctaca
tgtactaagaattgtgcctgcatttcttggcccatgaggaaagtgtttta
gaacactaattcttgatttcttccccttccatccttttggtggtcaacaa
agagaaaacagatctcagaaaaggaaaatcaaatactttctctatgctta
tgagtactggtaagaagaataaggctttattttctagttgctaaaa
aggaagaaggatacacacagcagtgtaaagaggtatacagcaagggtggg
cagggtgagccaatcagagaggaccctgaggagaggctaaaggacctggg
aatccagaaggaccgatgcatacctagtgatggagacattaaagagttaa
ccctgggagaagcaattccaagaagaaaggctgtctctgggtggtgagag
ataaggtagcatggtgggtaggtttggggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_3646867_3647979
seq2: B6Ng01-284G03.b_47_1142

seq1  GAATTCATTGCTAACCCTATTGTCCAAAGCACATGACAACAGTAAAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCTAACCCTATTGTCCAAAGCACATGACAACAGTAAAGATC  50

seq1  CTATCTTGCCCCTCCCACCATATGATTAACGTCATTAATAAATTTTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGCCCCTCCCACCATATGATTAACGTCATTAATAAATTTTCTGC  100

seq1  TGTCTCAAGCAAATTCATTGGAGGTTAAATACCTTAACATTCAGCTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAGCAAATTCATTGGAGGTTAAATACCTTAACATTCAGCTGGAT  150

seq1  GGTGATGGCTCATGCCTTTAATCCCAGAACTCAGGAGGCAAATCTAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGGCTCATGCCTTTAATCCCAGAACTCAGGAGGCAAATCTAGGCA  200

seq1  TATCTCTGAGTTTGAGGTCAGCCTGGTCTATATAGTATGTCTCAGGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGAGTTTGAGGTCAGCCTGGTCTATATAGTATGTCTCAGGACAG  250

seq1  CCAGGGCTACAGGGAGAGATCCTGTCTTGGAAAACAAATAAAATAATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTACAGGGAGAGATCCTGTCTTGGAAAACAAATAAAATAATACA  300

seq1  AATATAAATATAAACAAAACAATGCAACATTCTTAACTGGAAAGTATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATATAAACAAAACAATGCAACATTCTTAACTGGAAAGTATTTG  350

seq1  GCTATAGATGCTGAATGAAAGCCTTTTCTAAAGCTAAACTATATGCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGATGCTGAATGAAAGCCTTTTCTAAAGCTAAACTATATGCTGTC  400

seq1  AGCAATTGGTAATTTATCTCCACAATACAATAATAAGAAATACTGAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTGGTAATTTATCTCCACAATACAATAATAAGAAATACTGAAACT  450

seq1  ATGTGTACTTCCGTCTGATAGCACATAAGTCATTAATATACCATACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACTTCCGTCTGATAGCACATAAGTCATTAATATACCATACAGAA  500

seq1  TCAAAAATAATTGTCAGGGTATTCCTTCTAAATAAAATAATAATAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATAATTGTCAGGGTATTCCTTCTAAATAAAATAATAATAATAAA  550

seq1  AATAATTCCTTCTAAAGGCTCGGAATAATTTGTCCTGTGTGTCCTTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCCTTCTAAAGGCTCGGAATAATTTGTCCTGTGTGTCCTTTGCT  600

seq1  TCCACTTTTTTTTTTCTTCAACACAACCAAAGTACTTTTCACAAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTTTTTTTTCTTCAACACAACCAAAGTACTTTTCACAAAGAAAA  650

seq1  TAGTTATAAATTGGAGCCTTGGACCCTTTGTTTAATGCCTTAAATACCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATAAATTGGAGCCTTGGACCCTTTGTTTAATGCCTTAAATACCCC  700

seq1  TTGAGTAGGATGGGCTGTTTTGTGAAATACTTGTGATCATTCTATTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAGGATGGGCTGTTTTGTGAAATACTTGTGATCATTCTATTGAGC  750

seq1  ATAGATGCCTAAAATCTCTAGCTACCAAGCTCAATGGAGGCAAAGGCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGCCTAAAATCTCTAGCTACCAAGCTCAATGGAGGCAAAGGCTAC  800

seq1  TGGAGACATGTGGGTCTTGTGTCTCATTTGGAGTGAGGATCAACATGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACATGTGGGTCTTGTGTCTCATTTGGAGTGAGGATCAACATGATG  850

seq1  TTAGTTATACACACATTAAATTATATTTCCACATCAGAGTGCATCCTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATACACACATTAAATTATATTTCCACATCAGAGTGCATCCTACA  900

seq1  TGTACTAAGAATTGTGCCTGCATTTCTTGGCCCATGAGGAAAGTGTTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTACTAAGAATTGTGCCTGCATTTCTTGGCCCATGAGGAAAGTG-TTTT  949

seq1  AGAACACTAATTCTTTGATTTCTTCCCCTTCCCATCCCTTTTTGGTTGGT  1000
      ||||||||||||| |||||||||||||||| ||||||  |||||||  | 
seq2  AGAACACTAATTC-TTGATTTCTTCCCCTT-CCATCC--TTTTGGT--GG  993

seq1  TCAACAAAGAGAAAACAGAATCTCAGGAAAAGGAAAAATCAAATACTTTC  1050
      |||||||||||||||||| |||||| ||||||| ||||||||||||||||
seq2  TCAACAAAGAGAAAACAG-ATCTCA-GAAAAGG-AAAATCAAATACTTTC  1040

seq1  TCTAATGCTTAATGAAGGTACTGGTAGGAAGAATAAAGGCTTTTATTTTC  1100
      ||| |||||| ||||  ||||||||| ||||||| ||||| |||||||| 
seq2  TCT-ATGCTT-ATGA--GTACTGGTAAGAAGAAT-AAGGC-TTTATTTT-  1083

seq1  CTAAGTGCTAAAA  1113
      |||  ||||||||
seq2  CTAGTTGCTAAAA  1096

seq1: chrX_3786292_3786524
seq2: B6Ng01-284G03.g_75_307 (reverse)

seq1  CACACCCCAAACCTACCCACCATGCTACCTTATCTCTCACCACCCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCAAACCTACCCACCATGCTACCTTATCTCTCACCACCCAGAGA  50

seq1  CAGCCTTTCTTCTTGGAATTGCTTCTCCCAGGGTTAACTCTTTAATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTCTTCTTGGAATTGCTTCTCCCAGGGTTAACTCTTTAATGTCT  100

seq1  CCATCACTAGGTATGCATCGGTCCTTCTGGATTCCCAGGTCCTTTAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTAGGTATGCATCGGTCCTTCTGGATTCCCAGGTCCTTTAGCCT  150

seq1  CTCCTCAGGGTCCTCTCTGATTGGCTCACCCTGCCCACCCTTGCTGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGGGTCCTCTCTGATTGGCTCACCCTGCCCACCCTTGCTGTATA  200

seq1  CCTCTTTACACTGCTGTGTGTATCCTTCTTCCT  233
      |||||||||||||||||||||||||||||||||
seq2  CCTCTTTACACTGCTGTGTGTATCCTTCTTCCT  233