BAC Information

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BAC

Clone NameB6Ng01-285B18
ChromosomeX (Build37)
Map Location 158,984,652 - 159,156,181
singlet/doubletdoublet
Overlap geneReps2, LOC654358, LOC100041557, LOC667630
Upstream geneRai2, Gm47, Nhs
Downstream geneRbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285B18.bB6Ng01-285B18.g
ACCGA083642GA083643
length1,1041,065
definitionB6Ng01-285B18.b B6Ng01-285B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,984,652 - 158,985,745)(159,155,118 - 159,156,181)
sequence
gaattctgtcattgtaggcccacatcatcacttacccgaataagagatgc
ctgccgacgaaagggtttggctcctggaccctctgatgagggtccttcag
gctggccaatgggctgcctttcatatggagctgaaaaacaagagagactg
ctagcagggtatacagagactctattacaaaattatcattttccactcaa
gctgatgtagcatgtgcttttcaagaaaaaggtaataaaggaattggaac
atataatctgagcgctacctaagactcacaaatcttgatcctcttacctc
cataatttcactaaacaatctaaagacatttaaccaataccatgataaaa
ccaaaagggttaaggttaggaataaggcaagagggtgatgcagtgagaac
ctcagagtgagtccgcagtagaaatgtgccatactaccagtactcattgt
ttgttgctgctttctgttaggggggcagtaaccttggaccatgacctgaa
gtagtggagctcacttttatgttcattcatggttttgaaggatgtgattt
tagcctaaaacaaatacttggctgtaggtgagaattaaacaaaggcctga
tttgaatactcagcacccccagccttataaactatatctagggacgggct
gtacttttcctggatggctgaagggctattttgacttcctccttcttttc
ttccagtggaatcaaaactgaagcatggcatgcactactgcaattggatc
ccctgtcacttaaaaaaaaaactataatgaatttagacatcggtttttcc
tttttccaattttatgctatattcaaacaaagtttacattcatttgggga
gagaaaagtaaaaagggaaaaatagccttgcatttttaaaaaatgaatta
aggaacaaataaaactcaactgtacatcaagtagaaaactcaggaatcca
aaatactatctgccctaaatgaattgtatatttcatccctccaaattaag
cacaggaaactacactataacttttattttatggaaagggaaactgattc
tgagactgggaaatgattgccctattttgaacgtggggctaatgcttaat
cata

gaattctaaggtgtcattgttgagtgaatagaaggaagatactggaatta
ttaaagcttagaaacttaggagtagatggtttttgactccaccctcaggg
atgcatgctctccccctaagaaaggatccacttagaccaaggtagagaaa
gcaggttagaagcaagtcgcttactgtctaggtttatagtctccctctag
caccctctcctggcagagcgtagtaatgaggacctgacaacacaaaacat
tccccagaggccctgccccgttgtcatctgtcagagaacacaggcttgga
gctgggagaaaatgtcacaacaaatctttctacatttacaacaagttact
acagtttatatgagcctagcttccgtttctattatctctgtagttttaga
tgacgttccctccacttcagtcctgaagatcaaacccggggtgctgtgca
tgttcagcaagttctctgccactgggttgtatctccaactcctctcccct
ttttggagtcaaggtcctatgtccctgaggctgactttgagctcactagg
tagccaatgatgatttgaactgttgaccctcctgcctctgccttttgagt
cctggtcttacacacatgtgccattatgcccgtctatttttagagggttg
atttccttttaaaatagatattgtttttacttttttctcttttatttttt
cttttcgagacagggtttttctgtgtagccctggctgtcctggaactcac
tgtgtagaccaggctggcctcgaactcagatatccacctgcctctgcctc
ccgaatgctgggattaaaggcaggtgccaccactgcccagctacttgttt
cttttctaaaatttatttttattttttttattttttttttttaaagattt
atttatttattatatgtaagtacactgtagctgtcttcagacgcaccaga
agagggcatcagatctcattacgggtggttgtgagccaccatgtgctgct
ggattggaacttcggacccttcggaagagcagtcggtgcttcttacaact
gagcaatctcaccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158984652_158985745
seq2: B6Ng01-285B18.b_45_1148

seq1  GAATTCTGTCATTGTAGGCCCACATCATCACTTACCCGAATAAGAGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCATTGTAGGCCCACATCATCACTTACCCGAATAAGAGATGC  50

seq1  CTGCCGACGAAAGGGTTTGGCTCCTGGACCCTCTGATGAGGGTCCTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGACGAAAGGGTTTGGCTCCTGGACCCTCTGATGAGGGTCCTTCAG  100

seq1  GCTGGCCAATGGGCTGCCTTTCATATGGAGCTGAAAAACAAGAGAGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCAATGGGCTGCCTTTCATATGGAGCTGAAAAACAAGAGAGACTG  150

seq1  CTAGCAGGGTATACAGAGACTCTATTACAAAATTATCATTTTCCACTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGGGTATACAGAGACTCTATTACAAAATTATCATTTTCCACTCAA  200

seq1  GCTGATGTAGCATGTGCTTTTCAAGAAAAAGGTAATAAAGGAATTGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTAGCATGTGCTTTTCAAGAAAAAGGTAATAAAGGAATTGGAAC  250

seq1  ATATAATCTGAGCGCTACCTAAGACTCACAAATCTTGATCCTCTTACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCTGAGCGCTACCTAAGACTCACAAATCTTGATCCTCTTACCTC  300

seq1  CATAATTTCACTAAACAATCTAAAGACATTTAACCAATACCATGATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTCACTAAACAATCTAAAGACATTTAACCAATACCATGATAAAA  350

seq1  CCAAAAGGGTTAAGGTTAGGAATAAGGCAAGAGGGTGATGCAGTGAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGGTTAAGGTTAGGAATAAGGCAAGAGGGTGATGCAGTGAGAAC  400

seq1  CTCAGAGTGAGTCCGCAGTAGAAATGTGCCATACTACCAGTACTCATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTGAGTCCGCAGTAGAAATGTGCCATACTACCAGTACTCATTGT  450

seq1  TTGTTGCTGCTTTCTGTTAGGGGGGCAGTAACCTTGGACCATGACCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTGCTTTCTGTTAGGGGGGCAGTAACCTTGGACCATGACCTGAA  500

seq1  GTAGTGGAGCTCACTTTTATGTTCATTCATGGTTTTGAAGGATGTGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGAGCTCACTTTTATGTTCATTCATGGTTTTGAAGGATGTGATTT  550

seq1  TAGCCTAAAACAAATACTTGGCTGTAGGTGAGAATTAAACAAAGGCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAAAACAAATACTTGGCTGTAGGTGAGAATTAAACAAAGGCCTGA  600

seq1  TTTGAATACTCAGCACCCCCAGCCTTATAAACTATATCTAGGGACGGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATACTCAGCACCCCCAGCCTTATAAACTATATCTAGGGACGGGCT  650

seq1  GTACTTTTCCTGGATGGCTGAAGGGCTATTTTGACTTCCTCCTTCTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTCCTGGATGGCTGAAGGGCTATTTTGACTTCCTCCTTCTTTTC  700

seq1  TTCCAGTGGAATCAAAACTGAAGCATGGCATGCACTACTGCAATTGGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGGAATCAAAACTGAAGCATGGCATGCACTACTGCAATTGGATC  750

seq1  CCCTGTCACTTAAAAAAAAAACTATAATGAATTTAGACATCGGTTTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCACTTAAAAAAAAAACTATAATGAATTTAGACATCGGTTTTTCC  800

seq1  TTTTTCCAATTTTATGCTATATTCAAACAAAGTTTACATTCATTTGGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAATTTTATGCTATATTCAAACAAAGTTTACATTCATTTGGGGA  850

seq1  GAGAAAAGT-AAAAGGGAAAAATAGCCTTGCATTTTTAAAAAATGAATT-  898
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  GAGAAAAGTAAAAAGGGAAAAATAGCCTTGCATTTTTAAAAAATGAATTA  900

seq1  AGGAACAAATAAAACTCAACTGTACATCAAGTAGAAAACTCAGGAATCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAATAAAACTCAACTGTACATCAAGTAGAAAACTCAGGAATCCA  950

seq1  AAATACTATCTGCCCCTAAATGAATTGTATATTTCATCCCTCCAAATTAA  998
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAATACTATCTG-CCCTAAATGAATTGTATATTTCATCCCTCCAAATTAA  999

seq1  GCACAGG-AACTACACTATAACTTT--ATTTATGGAAA-GGAAACTGATT  1044
      ||||||| |||||||||||||||||   |||||||||| |||||||||||
seq2  GCACAGGAAACTACACTATAACTTTTATTTTATGGAAAGGGAAACTGATT  1049

seq1  CTGAGACTGG--AATGATTG-CCTATTT--GACGTGGGCTTAATGCTTAT  1089
      ||||||||||  |||||||| |||||||   |||||||  ||||||||| 
seq2  CTGAGACTGGGAAATGATTGCCCTATTTTGAACGTGGGGCTAATGCTTAA  1099

seq1  TCATA  1094
      |||||
seq2  TCATA  1104


seq1: chrX_159155118_159156181
seq2: B6Ng01-285B18.g_67_1131 (reverse)

seq1  CTGGTGAGATGGCTCAGTTGGTAAG-AGCACCCGACTGCTCTTCCGAA-G  48
      |||||||||| |||||||| ||||| |||| ||||||||||||||||| |
seq2  CTGGTGAGATTGCTCAGTT-GTAAGAAGCA-CCGACTGCTCTTCCGAAGG  48

seq1  GTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTA  98
      ||||||||||| ||| ||||| | ||||||||||||||||||||||||||
seq2  GTCCGAAGTTCCAAT-CCAGC-AGCACATGGTGGCTCACAACCACCCGTA  96

seq1  ATGAGATCTGATGCCCTCTTCTGGTGCGTCTGAAGACAGCTACAGTGTAC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATCTGATGCCCTCTTCTGGTGCGTCTGAAGACAGCTACAGTGTAC  146

seq1  TTACATATAATAAATAAATAAATCTTTAAAAAAAAAA---TAAAAAAATA  195
      |||||||||||||||||||||||||||||||||||||    |||||||||
seq2  TTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAATAAAAAAAATA  196

seq1  AAAATAAATTTTAGAAAAGAAACAAGTAGCTGGGCAGTGGTGGCACCTGC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATTTTAGAAAAGAAACAAGTAGCTGGGCAGTGGTGGCACCTGC  246

seq1  CTTTAATCCCAGCATTCGGGAGGCAGAGGCAGGTGGATATCTGAGTTCGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCATTCGGGAGGCAGAGGCAGGTGGATATCTGAGTTCGA  296

seq1  GGCCAGCCTGGTCTACACAGTGAGTTCCAGGACAGCCAGGGCTACACAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACACAGTGAGTTCCAGGACAGCCAGGGCTACACAGA  346

seq1  AAAACCCTGTCTCGAAAAGAAAAAATAAAAGAGAAAAAAGTAAAAACAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTGTCTCGAAAAGAAAAAATAAAAGAGAAAAAAGTAAAAACAAT  396

seq1  ATCTATTTTAAAAGGAAATCAACCCTCTAAAAATAGACGGGCATAATGGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTTAAAAGGAAATCAACCCTCTAAAAATAGACGGGCATAATGGC  446

seq1  ACATGTGTGTAAGACCAGGACTCAAAAGGCAGAGGCAGGAGGGTCAACAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTGTAAGACCAGGACTCAAAAGGCAGAGGCAGGAGGGTCAACAG  496

seq1  TTCAAATCATCATTGGCTACCTAGTGAGCTCAAAGTCAGCCTCAGGGACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCATCATTGGCTACCTAGTGAGCTCAAAGTCAGCCTCAGGGACA  546

seq1  TAGGACCTTGACTCCAAAAAGGGGAGAGGAGTTGGAGATACAACCCAGTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTTGACTCCAAAAAGGGGAGAGGAGTTGGAGATACAACCCAGTG  596

seq1  GCAGAGAACTTGCTGAACATGCACAGCACCCCGGGTTTGATCTTCAGGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAACTTGCTGAACATGCACAGCACCCCGGGTTTGATCTTCAGGAC  646

seq1  TGAAGTGGAGGGAACGTCATCTAAAACTACAGAGATAATAGAAACGGAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGAGGGAACGTCATCTAAAACTACAGAGATAATAGAAACGGAAG  696

seq1  CTAGGCTCATATAAACTGTAGTAACTTGTTGTAAATGTAGAAAGATTTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTCATATAAACTGTAGTAACTTGTTGTAAATGTAGAAAGATTTGT  746

seq1  TGTGACATTTTCTCCCAGCTCCAAGCCTGTGTTCTCTGACAGATGACAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATTTTCTCCCAGCTCCAAGCCTGTGTTCTCTGACAGATGACAAC  796

seq1  GGGGCAGGGCCTCTGGGGAATGTTTTGTGTTGTCAGGTCCTCATTACTAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGGCCTCTGGGGAATGTTTTGTGTTGTCAGGTCCTCATTACTAC  846

seq1  GCTCTGCCAGGAGAGGGTGCTAGAGGGAGACTATAAACCTAGACAGTAAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCAGGAGAGGGTGCTAGAGGGAGACTATAAACCTAGACAGTAAG  896

seq1  CGACTTGCTTCTAACCTGCTTTCTCTACCTTGGTCTAAGTGGATCCTTTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTGCTTCTAACCTGCTTTCTCTACCTTGGTCTAAGTGGATCCTTTC  946

seq1  TTAGGGGGAGAGCATGCATCCCTGAGGGTGGAGTCAAAAACCATCTACTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGGAGAGCATGCATCCCTGAGGGTGGAGTCAAAAACCATCTACTC  996

seq1  CTAAGTTTCTAAGCTTTAATAATTCCAGTATCTTCCTTCTATTCACTCAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTTCTAAGCTTTAATAATTCCAGTATCTTCCTTCTATTCACTCAA  1046

seq1  CAATGACACCTTAGAATTC  1064
      |||||||||||||||||||
seq2  CAATGACACCTTAGAATTC  1065


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