BAC Information

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BAC

Clone NameB6Ng01-286F08
ChromosomeX (Build37)8 (Build37)
Map Location 158,001,573 - 158,002,04239,648,068 - 39,649,209
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePhka2, Ppef1, Rs1, Gja6, Scml2, LOC414364, Prkaca-ps1
Downstream geneRai2, Gm47, Nhs, Reps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286F08.bB6Ng01-286F08.g
ACCGA084558GA084559
length8701,144
definitionB6Ng01-286F08.b B6Ng01-286F08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(158,001,573 - 158,002,042)(39,648,068 - 39,649,209)
sequence
gaattctctgtttagctctgtaccccatttttaatttagataatttggtg
ttttggagtcaaacatcttaactcttttttttttaatttttctcacacta
aattttattttggagtcatagtaattttttgctattcttttttttctttt
cttttccatttttattaggcatttagctcatttacatttccaatgctata
ccaaaagtcccccatagccacccaccccccactcccctacccacccactc
cccctttttggccttggcattcccctgtactggggcatataaagtttgcg
tgtccaatgggcctctctttccagtgatggccgactaggccatcttttga
tacatatgcagctagagtcaagagctccggggtactggttagttcataat
gttgttccacctatagggttgcagatccctttagctccttgggtactttc
tctagctcctccactgggagccctgtgatccttccattagctgactgtga
gcatccacttctgtgtttgctaggccccggcatagtttcacaagagacag
ctacatctgggtcctttcgataaaatcttgctagtgtatgcaatggtgtc
agcgtttggatgctgattatggggtggatccctggatatggcagtctcta
catggtccatcctttcatctcagctccaaactttgtctctgtaactcctt
ccaagggtgttttgttcccacttctaaggaggggcatagtgtcccataag
atacaatttcctaaacacatgaaactcaagaaaaatgaagactgaagatt
gaactcttactgtattttgaatactagctctctgttagaaatagagttag
tgaagatcttttcccaatat

gaattctccattctgagaaaactgctccatcactacaagaagcaaaacaa
ggaaatgatctgtctccctcaatagtccctgcattgaggaagcagtcaat
gattacggaaacccttttctatttctaaactgaaagattctaaagggtaa
attggaaataggagcaattatttcttaattgttcaatcaaaaacacattt
attatgatgatgcttcttggataatcctggctcccataagagagaagttt
aaaaggaaaagagagggctgaaattgaacacctgattggccaccattgta
ctgccaaatctagattggaggctacatgtgcactataaaatgctcataag
acacaaagtttaacttgacttcttataaatgtgtccataaaatatagacc
tatcacgaggggttacaaaatatcaagagaagaggtagaaattcttctca
tacatcctctgtttttttttccttttacccagtttcttgaggttctagct
aacttaatatgcctaagaagtcctcatatttttaatgaatgtgaaagcca
aagtgaaatgccagttttcattgtgggacaaagaataaaatattgataag
agcaagtgttattagggttgagaaagccagcaccctaaataaattttcat
gatttcaagtatatattcttggttcagaaattttacatatatatatgcat
atatatgtatatacacacacacactaatgagataagagttcaaatataca
gaactaagatgtgtaattaattaataactaaaaattacagggggaaatga
catcaaaggaatctggaaatatggtcacaatacaaagctgtataggacag
tcattaaaatattttgtgtatgcatatatttgattatattgaaaaatatg
cagtattgttgaaaaaataagtgtgcaaactataagtaacacccaaaaaa
gcattattcattatgaacagcattgaagtgacaaatacagctcagtaaca
atgatattattagtaaactccagtggagaagtcagaaatgaatataatca
cactttttgaattatttctgggttatcttttgtaaatatgcatttcgaca
taattaaataggtggcatatgttgtgaaatgaacctctgctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158001573_158002042
seq2: B6Ng01-286F08.b_173_650

seq1  TTTTTGCTATTCTTTTTTTTAAAAAAT------ATTTTATTAGGTATTTT  44
      ||||||||||||||||||||      |       |||||||||| |||| 
seq2  TTTTTGCTATTCTTTTTTTTCTTTTCTTTTCCATTTTTATTAGGCATTTA  50

seq1  CTTCTTTTACATTTCCAATCCTATCCCAAAAGTCCCCCATA---CCCCTC  91
        || |||||||||||||| |||| ||||||||||||||||    ||| |
seq2  GCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATAGCCACCCAC  100

seq1  CCCCCACTCCCCTACCCACCCACTCCCACTTTTTGACCCTGGCATTCCTC  141
      ||||||||||||||||||||||||||| ||||||| || ||||||||| |
seq2  CCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCTTGGCATTCCCC  150

seq1  TGTACTGAGGCATATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCAGT  191
      ||||||| ||||||||||||||||  | ||||||||||||||||||||||
seq2  TGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGT  200

seq1  GATGGCCGACTAGGCCCTGTTCTGATACATATGCAGCTAGAGACACGAGC  241
      |||||||||||||||| | || |||||||||||||||||||| || ||||
seq2  GATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGC  250

seq1  CCTGGGGGTACTGGTTAGTTCATAATGTTGTTTCACCTATAGGGTTGCAG  291
       |  |||||||||||||||||||||||||||| |||||||||||||||||
seq2  TC-CGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAG  299

seq1  ACCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTACATTGGGGGCCCT  341
      | |||||||||||||||||||||||||||||||||| || |||| |||||
seq2  ATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCACTGGGAGCCCT  349

seq1  GTGATCCATCCAATAGATGACTGTGAGCATCCACTTCTGTGTTTGCTAGG  391
      ||||||| |||| ||| |||||||||||||||||||||||||||||||||
seq2  GTGATCCTTCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGG  399

seq1  CCCTGGCATAGCCTCACAAGAGACAGCTCTATCTGGGTCCTTTCAGCAAA  441
      ||| |||||||  |||||||||||||||  ||||||||||||||   |||
seq2  CCCCGGCATAGTTTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAA  449

seq1  ATCTTGCTAGTGTGTGCAATGGTGTCAGC  470
      ||||||||||||| |||||||||||||||
seq2  ATCTTGCTAGTGTATGCAATGGTGTCAGC  478


seq1: chr8_39648068_39649209
seq2: B6Ng01-286F08.g_69_1212

seq1  GAATTCTCCATTCTGAGAAAACTGCTCCATCACTACAAGAAGCAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTCTGAGAAAACTGCTCCATCACTACAAGAAGCAAAACAA  50

seq1  GGAAATGATCTGTCTCCCTCAATAGTCCCTGCATTGAGGAAGCAGTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGATCTGTCTCCCTCAATAGTCCCTGCATTGAGGAAGCAGTCAAT  100

seq1  GATTACGGAAACCCTTTTCTATTTCTAAACTGAAAGATTCTAAAGGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACGGAAACCCTTTTCTATTTCTAAACTGAAAGATTCTAAAGGGTAA  150

seq1  ATTGGAAATAGGAGCAATTATTTCTTAATTGTTCAATCAAAAACACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAATAGGAGCAATTATTTCTTAATTGTTCAATCAAAAACACATTT  200

seq1  ATTATGATGATGCTTCTTGGATAATCCTGGCTCCCATAAGAGAGAAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGATGATGCTTCTTGGATAATCCTGGCTCCCATAAGAGAGAAGTTT  250

seq1  AAAAGGAAAAGAGAGGGCTGAAATTGAACACCTGATTGGCCACCATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAAGAGAGGGCTGAAATTGAACACCTGATTGGCCACCATTGTA  300

seq1  CTGCCAAATCTAGATTGGAGGCTACATGTGCACTATAAAATGCTCATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAATCTAGATTGGAGGCTACATGTGCACTATAAAATGCTCATAAG  350

seq1  ACACAAAGTTTAACTTGACTTCTTATAAATGTGTCCATAAAATATAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGTTTAACTTGACTTCTTATAAATGTGTCCATAAAATATAGACC  400

seq1  TATCACGAGGGGTTACAAAATATCAAGAGAAGAGGTAGAAATTCTTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACGAGGGGTTACAAAATATCAAGAGAAGAGGTAGAAATTCTTCTCA  450

seq1  TACATCCTCTGTTTTTTTTTCCTTTTACCCAGTTTCTTGAGGTTCTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCTCTGTTTTTTTTTCCTTTTACCCAGTTTCTTGAGGTTCTAGCT  500

seq1  AACTTAATATGCCTAAGAAGTCCTCATATTTTTAATGAATGTGAAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATATGCCTAAGAAGTCCTCATATTTTTAATGAATGTGAAAGCCA  550

seq1  AAGTGAAATGCCAGTTTTCATTGTGGGACAAAGAATAAAATATTGATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAATGCCAGTTTTCATTGTGGGACAAAGAATAAAATATTGATAAG  600

seq1  AGCAAGTGTTATTAGGGTTGAGAAAGCCAGCACCCTAAATAAATTTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGTTATTAGGGTTGAGAAAGCCAGCACCCTAAATAAATTTTCAT  650

seq1  GATTTCAAGTATATATTCTTGGTTCAGAAATTTTACATATATATATGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAAGTATATATTCTTGGTTCAGAAATTTTACATATATATATGCAT  700

seq1  ATATATGTATATACACACACACACTAATGAGATAAGAGTTCAAATATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTATATACACACACACACTAATGAGATAAGAGTTCAAATATACA  750

seq1  GAACTAAGATGTGTAATTAATTAATAACTAAAAATTACAGGGGGAAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAGATGTGTAATTAATTAATAACTAAAAATTACAGGGGGAAATGA  800

seq1  CATCAAAGGAATCTGGAAATATGGTCACAATACAAAGCTGTATAGGACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGGAATCTGGAAATATGGTCACAATACAAAGCTGTATAGGACAG  850

seq1  TCATTAAAATA-TTTGTGTATGCATATATTTGATTATATTGAAAAATATG  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAAATATTTTGTGTATGCATATATTTGATTATATTGAAAAATATG  900

seq1  CAGTA-TGTTG-AAAAATAAGTGTGCAAACTATAAAGTAACAACCAAAAA  947
      ||||| ||||| ||||||||||||||||||||| |||||||| |||||||
seq2  CAGTATTGTTGAAAAAATAAGTGTGCAAACTAT-AAGTAACACCCAAAAA  949

seq1  AGCA-TATTCATTATGAACAGCATTGAAGTGACAAATACAGCTCAGT-AC  995
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCATTATTCATTATGAACAGCATTGAAGTGACAAATACAGCTCAGTAAC  999

seq1  AATGATA-TATTAGGTAAACTCCAGT-GAG-AGTCAGAAATGAATATAAT  1042
      ||||||| ||||| |||||||||||| ||| |||||||||||||||||||
seq2  AATGATATTATTA-GTAAACTCCAGTGGAGAAGTCAGAAATGAATATAAT  1048

seq1  CACACTTTTTAAATTATTTCTGGGTTATCTTTTGTAAAATTATTGGAATT  1092
      |||||||||| |||||||||||||||||||||||||||  |||  | |||
seq2  CACACTTTTTGAATTATTTCTGGGTTATCTTTTGTAAA--TAT--GCATT  1094

seq1  TCGACATAATAAAATAGTTGCCATATGTTGTG-AATGAACCTCTTGCTGT  1141
      |||||||||| |||||| || ||||||||||| |||||||||| ||||||
seq2  TCGACATAATTAAATAGGTGGCATATGTTGTGAAATGAACCTC-TGCTGT  1143

seq1  T  1142
      |
seq2  T  1144


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