BAC Information

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BAC

Clone NameB6Ng01-287A22
ChromosomeX (Build37)1 (Build37)
Map Location 42,609,418 - 42,609,701165,838,960 - 165,840,143
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC637141, Wdr40c, Wdr40b, LOC665585, 1110059M19Rik
Downstream geneLOC100040038, EG385346, LOC100040075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287A22.bB6Ng01-287A22.g
ACCGA085087GA085088
length9651,143
definitionB6Ng01-287A22.b B6Ng01-287A22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,609,418 - 42,609,701)(165,838,960 - 165,840,143)
sequence
gaattctctactaaaaccatctggccctgggcttttttttttttggttgg
aagacttttattgactgcttctatttcctagggggttatagggatatacg
gaggcttaaatagtttacctgatttcaatttaactttggtaagtggtatt
tgtctgaaaaaaaatcatctattttttttaaagatgttccaattttgtgg
aatacaggcttttgaagtaagacctaatgattctttgaatttcctcagtg
tcattatgtcttccttttcatttctgattttgtttatttggatactgtct
ctttatattttcattagtttgtgtaagggtttgtctatcttgttgatttt
ctcaaaaaaaaaaacagctcttggttttgttgattctttgtattgttttc
tttatttctaactgattgatttcagtcatggctttgataatttcctgcct
tctactctacttcagtgtgcttacttcccccccccccccagagatttaag
gtgtacttttaaattgctggtatgggaactttctaatttatttttgaggc
acttagtgctatgaagaaaatttctcttaacactgctttcattgtagccc
atggaatttgggtatgttgtgccttcattttcattgtattttcaaaagtc
tttaattgtttttcctaatttgtccctgacccagcaatcattgattagag
ttgtcagatttccatgtgtgtgtaggctttctgatgtttctgttgctgtt
gctgtccagcttaatcaacaatggtctgaaaagatacaaggcatcatttc
aatttttgtgtatctgttgaggcttgctttgtaatcaaatatgatcaatt
ttcagaaagcctccataaggtgctgagaagtatattcttttgtgtttggg
tgaaattttctatagatacctgtaggtccatttgatcatgtccgatagtt
tcattatttctgttt
gaattccagggccaagaagcaggagtgggtgggtaggagagcagagcagg
gggagggtacaggggactttcgggatagcctttgaaatgtaaatgaagaa
actatctaataaaaaattgaaaaacaaaaacaaaaactaattgaatgtaa
actgtatttaacactaacgttttcaattttgtaagtgtgaaataatctaa
ttcacacaaaataggcatcacctgcggtacactccgtgactgtggggctt
aagccgatatacactctgtgactgtggggcttaagtcgactgtcctcggc
actgactttttttttctttccctgctagtgtatcactacgcagttctggc
ttacctggaactcactatgtagatcaggctggcctcaaactcacagagat
tcgactacctctgagcctcccaactgctgtaattaaaagtgtgagccact
atgcctagcttgcttgcaactgaaaatttaactggcatatttagtactat
ttttacagcatagtttgaaaatcataatggaaccaacatcaaaaacatat
tttttataagtttaatggtaatatacatatatttttatatatttttaagg
catttttgttttgaaattgaatcattatatcgttgagaaaataaacttca
agagtataattatgcagtctcttaatgagcctggcatgtgcacacacaca
cacacatacacacacacacaagttagctgtaatttacagttacttttgtg
tattgtatatacgtaattatattttgccttttattattaataaagcataa
ataatacttgggaggtttctttgtttcctttgtatatatctgtgtatgcc
atgtgtatgcaggtgccttctgagaccagaagaaagcgttgctttctcca
gagctggagttagacccagttgtgacccgcttgacatggtgctggaaact
gaccaagtctttgagaggagaatgctctagtcacttagcagcttcagcca
taaataatatttaaatgaaatctcacttttcaaataaacgaattatataa
gtatgggaggctgtatttagtcatatcggcatccatagacgttttgtatg
gtacttcacgtaggcatctgtggggcgattcattcagtagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_42609418_42609701
seq2: B6Ng01-287A22.b_110_402 (reverse)

seq1  TTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGG  50
      ||||||||||||||||||||||| |||||||||   | ||| |  |||  
seq2  TTTGAGAAAATCAACAAGATAGACAAACCCTTACACAAACTAATGAAAAT  50

seq1  GCACAGGGACAAAATCCTAATTAACAAAATCAGAACTGAAAAGGGAGACA  100
        | || ||||  |||| ||| ||||||||||||| |||||||| |||||
seq2  ATAAAGAGACAGTATCCAAATAAACAAAATCAGAAATGAAAAGGAAGACA  100

seq1  TAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAA  150
      |||  |||    |||| ||||| ||||  | ||| || || | || ||||
seq2  TAATGACA----CTGAGGAAATTCAAAGAATCATTAGGTCTTACTTCAAA  146

seq1  AGGCTATACTCAACAAAACTGGAAAACC--TGGACGAAATGGACAAATTT  198
      || || || || |||||| ||||| | |  |  |  |||| ||  | |||
seq2  AGCCTGTATTCCACAAAATTGGAACATCTTTAAAAAAAATAGATGATTTT  196

seq1  CT---GGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCA  245
       |    |||| ||||||  |||||||||| |||    |||| ||  || |
seq2  TTTTCAGACAAATACCACTTACCAAAGTTAAATTGAAATCAGGTAAACTA  246

seq1  TCTAA--------ACAGTCCCATATCACCTAAAGAAATAGAAGCAGT  284
      | |||        | |  || ||| | ||  | ||||||||||||||
seq2  TTTAAGCCTCCGTATATCCCTATAACCCCCTAGGAAATAGAAGCAGT  293

seq1: chr1_165838960_165840143
seq2: B6Ng01-287A22.g_67_1209 (reverse)

seq1  GCACTACTGAATGAATCTGCCCCACAG-TGTTTTCCCCTTACAGCTGGGA  49
      ||||||||||||||||| ||||||||| ||       | |||    | ||
seq2  GCACTACTGAATGAATC-GCCCCACAGATG-------CCTAC----GTGA  38

seq1  GGTGCCATTAACAAAAACGTCTAATGAATGCCAGATTAATGACTTAAATA  99
       || ||||  || ||||||||| ||| ||||| |||  ||||| ||||||
seq2  AGTACCAT--AC-AAAACGTCT-ATGGATGCC-GAT--ATGAC-TAAATA  80

seq1  CAGCCTCCCAATACTTATATAATTTTCCCTTTATTTTTGAAAAAGTGAGA  149
      ||||||||| ||||||||||||||   | |||||||    ||||||||||
seq2  CAGCCTCCC-ATACTTATATAATT---CGTTTATTT---GAAAAGTGAGA  123

seq1  TTTCATTTTAAAATATTATTTATGGGGCTGGAAAGCTGGCTAAGTGACTA  199
      ||||||||  |||||||||||||  |||||  ||||| ||||||||||| 
seq2  TTTCATTT--AAATATTATTTAT--GGCTG--AAGCT-GCTAAGTGACT-  165

seq1  AGAGCAATTTCTCCTCCTCCAAAGGACTTGGGTCAGTTTCCAGCACCCAT  249
      ||||||  ||||||| |||  || ||||| ||||||||||||||| ||||
seq2  AGAGCA--TTCTCCT-CTC--AAAGACTT-GGTCAGTTTCCAGCA-CCAT  208

seq1  GTCAAGCGGGTCACAACTGGGTCTAACTCCAGCTCTGGAGAAAGCAACGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCGGGTCACAACTGGGTCTAACTCCAGCTCTGGAGAAAGCAACGC  258

seq1  TTTCTTCTGGTCTCAGAAGGCACCTGCATACACATGGCATACACAGATAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGGTCTCAGAAGGCACCTGCATACACATGGCATACACAGATAT  308

seq1  ATACAAAGGAAACAAAGAAACCTCCCAAGTATTATTTATGCTTTATTAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGGAAACAAAGAAACCTCCCAAGTATTATTTATGCTTTATTAAT  358

seq1  AATAAAAGGCAAAATATAATTACGTATATACAATACACAAAAGTAACTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGGCAAAATATAATTACGTATATACAATACACAAAAGTAACTGT  408

seq1  AAATTACAGCTAACTTGTGTGTGTGTGTATGTGTGTGTGTGTGTGCACAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACAGCTAACTTGTGTGTGTGTGTATGTGTGTGTGTGTGTGCACAT  458

seq1  GCCAGGCTCATTAAGAGACTGCATAATTATACTCTTGAAGTTTATTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTCATTAAGAGACTGCATAATTATACTCTTGAAGTTTATTTTCT  508

seq1  CAACGATATAATGATTCAATTTCAAAACAAAAATGCCTTAAAAATATATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGATATAATGATTCAATTTCAAAACAAAAATGCCTTAAAAATATATA  558

seq1  AAAATATATGTATATTACCATTAAACTTATAAAAAATATGTTTTTGATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATGTATATTACCATTAAACTTATAAAAAATATGTTTTTGATGT  608

seq1  TGGTTCCATTATGATTTTCAAACTATGCTGTAAAAATAGTACTAAATATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCATTATGATTTTCAAACTATGCTGTAAAAATAGTACTAAATATG  658

seq1  CCAGTTAAATTTTCAGTTGCAAGCAAGCTAGGCATAGTGGCTCACACTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAAATTTTCAGTTGCAAGCAAGCTAGGCATAGTGGCTCACACTTT  708

seq1  TAATTACAGCAGTTGGGAGGCTCAGAGGTAGTCGAATCTCTGTGAGTTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACAGCAGTTGGGAGGCTCAGAGGTAGTCGAATCTCTGTGAGTTTG  758

seq1  AGGCCAGCCTGATCTACATAGTGAGTTCCAGGTAAGCCAGAACTGCGTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGATCTACATAGTGAGTTCCAGGTAAGCCAGAACTGCGTAG  808

seq1  TGATACACTAGCAGGGAAAGAAAAAAAAAGTCAGTGCCGAGGACAGTCGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACACTAGCAGGGAAAGAAAAAAAAAGTCAGTGCCGAGGACAGTCGA  858

seq1  CTTAAGCCCCACAGTCACAGAGTGTATATCGGCTTAAGCCCCACAGTCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCCCCACAGTCACAGAGTGTATATCGGCTTAAGCCCCACAGTCAC  908

seq1  GGAGTGTACCGCAGGTGATGCCTATTTTGTGTGAATTAGATTATTTCACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTACCGCAGGTGATGCCTATTTTGTGTGAATTAGATTATTTCACA  958

seq1  CTTACAAAATTGAAAACGTTAGTGTTAAATACAGTTTACATTCAATTAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAAATTGAAAACGTTAGTGTTAAATACAGTTTACATTCAATTAGT  1008

seq1  TTTTGTTTTTGTTTTTCAATTTTTTATTAGATAGTTTCTTCATTTACATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTGTTTTTCAATTTTTTATTAGATAGTTTCTTCATTTACATT  1058

seq1  TCAAAGGCTATCCCGAAAGTCCCCTGTACCCTCCCCCTGCTCTGCTCTCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGCTATCCCGAAAGTCCCCTGTACCCTCCCCCTGCTCTGCTCTCC  1108

seq1  TACCCACCCACTCCTGCTTCTTGGCCCTGGAATTC  1184
      |||||||||||||||||||||||||||||||||||
seq2  TACCCACCCACTCCTGCTTCTTGGCCCTGGAATTC  1143