BAC Information

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BAC

Clone NameB6Ng01-289M03
ChromosomeX (Build37)X (Build37)
Map Location 18,832,176 - 18,832,64735,252,911 - 35,254,032
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUtx, LOC100043952, 4930578C19Rik, LOC100043098, EG628855, LOC385333, EG628871
Downstream geneLOC100043953, BC049702, LOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289M03.bB6Ng01-289M03.g
ACCGA087069GA087070
length9941,129
definitionB6Ng01-289M03.b B6Ng01-289M03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,832,176 - 18,832,647)(35,252,911 - 35,254,032)
sequence
gaattcacagaagcactctatttttaaggagtgaagtcataggttggttt
ttgtctctcccaaaccttatatctcaattgttatagcagtccctttaaga
aaaatttattcatttaattttatattttatgtatatgagtgaattgctga
ctgtgtacctgtgggccacttgtgtagtatgccaggaggagtcagaacag
ggaggtggataccctgaggcttctgcaaactacaccttggctctctgtta
gaacagacaggtttcgtgatctcagagacatctctccagacatataaaac
ataaacgtgtatttaaacaaattacagtgcacagctgatctttctttctt
ttattttaattagatattttctttatatacatttcaaatttcaaatgcaa
gttccctataccctcccctcgccctgctcccctacccacccactcccact
tcttggccctagcattcccctgtactggggcatataaagtttgcaagacc
aaggggcctctcttcccaatgatggccgactaggacatcttctgctacat
atgcagctagagacacgagctctggggggtactggttagttcatattgtt
ccacctatagggtttcagaccccttcagctccttgggtgctttctctagc
tcctccattgggggccctgtgttccatccaatagatgactgtgagcatcc
acttctgtatttgccaggcactgggggaatttgcattagtatcttgaatg
ttctcagtaactttttcggcaatttagtaagaaagctcaatcctttaagc
atgcaattagtttatcaagaattttacctatgaactaaccagtacgccca
gagctccctgggactaaaccaccaatcaaagaaaacacatggcagacaca
tggctctagctgcaatgtagcacaggatgggccgtgttggacatcaatgg
gaggagaggtccttggccctgtgaaggttctatgccccagtata

gaattcacttgtagctcattggtggttcctgggccttgctgtgggaaaat
agcaaaacctctccagcccacgcccaagaacaataggaaggtgggaggca
gtctgcccaggatccactgtgctagcctcttttgagcacccagaatgcac
agtgatgagaccagggtacctcttcctgcttggtacttcctttctggcct
cccaaattagtgactataggcctttccccttgtgactagggctgagtgta
attgtggtcagagtacagagagatacacactcaataaaacaatgtgccac
aggctgtttcaggtccttggtcccaatattgcttttagaaatatgctagg
tctcttacatttatagaccagactaaggcgaattctgagagaaaattctc
tgagtgacagtgttaaaagtgagtaagaacatggtctcttcactcctgtg
aggcatgtgggctgcacagacttctgaaggcaacatcaccgtgcatgaca
cccttccaaaaaaataggttttgttttgttttttcagaacacttacctgc
acatcagattcatccacacccatccatcgtgcaagatccctcctaaagag
aaaaagttccaacatttagcctttctggtggaaatcaattgtgtaaggac
atgtccgatttggttttatatgtttgggcccacacttgtgtgctcataca
catttacttacaagtcactattcttaaacatttaccttaaacctagcttt
agcaatgggtttcttccacagaccaaatctaagggtgtcccccaatacac
agatgtctctttggtgaactgacaatgtaaaaatcagtgaagagagcgtc
tgggatgaaaagcactagcaacattttaacgcgagttggaatcctcctgc
tcttcctagccacgccccagacttctcacccgttacttctggaaactcat
ttacaacactaaacattgtctaaatttccaggtcttgaacagggcaacaa
aacattgttccagtcggcataagctcccacacctaccctggggatctagt
tgcaggctgacagttctaaattggcaggcggaagattctaaattgccagc
gccagttctggggggcaggtgccattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_18832176_18832647
seq2: B6Ng01-289M03.b_334_768

seq1  ACATATAAAACATAAAATAAAAGAATCTCAAAAGCTAGCTAAACGTGGTG  50
      |||||||||||     ||||| |  | |  |||       |||       
seq2  ACATATAAAAC-----ATAAACGTGTATTTAAA------CAAA-------  32

seq1  GCTTACATTAATTTTTTTCTTTCATGATTTCTCCTTCATCTTTTTTTATT  100
        |||||         | |     |||| | || ||| | | |||| |||
seq2  --TTACA--------GTGCACAGCTGATCTTTCTTTCTTTTATTTTAATT  72

seq1  AGATATTTTCTTTCTATACATTTCAAATTTCAAATGCTATCCCCAAAGTT  150
      ||||||||||||| |||||||||||||||||||||||        |||||
seq2  AGATATTTTCTTTATATACATTTCAAATTTCAAATGC--------AAGTT  114

seq1  CCCTATACCCTCCCTCCACCCTGCTCCCCTACCCACCCACTCCCACTTCT  200
      ||||||||||||||  | ||||||||||||||||||||||||||||||||
seq2  CCCTATACCCTCCCCTCGCCCTGCTCCCCTACCCACCCACTCCCACTTCT  164

seq1  TGGCTCTGGCATTCCTGTGTACTGGGGCATATCAAGTTTGCAATACCAAG  250
      |||| || |||||||  ||||||||||||||| |||||||||| ||||||
seq2  TGGCCCTAGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGACCAAG  214

seq1  GGTCCTCTCTTCCCAGTGATGGCCGACTAGACCATCTTCTGCTACATATG  300
      || |||||||||||| ||||||||||||||  ||||||||||||||||||
seq2  GGGCCTCTCTTCCCAATGATGGCCGACTAGGACATCTTCTGCTACATATG  264

seq1  CAGCTAGAGACACGAGCTCT-GGGGATACTGATTAGTTCATATTGTTGTT  349
      |||||||||||||||||||| |||| ||||| ||||||||||   |||||
seq2  CAGCTAGAGACACGAGCTCTGGGGGGTACTGGTTAGTTCATA---TTGTT  311

seq1  CCACCTATAGGGTTTCAGACCCCTTAAGCT-CTTGGGTACTTTCTCTAGC  398
      ||||||||||||||||||||||||| |||| ||||||| |||||||||||
seq2  CCACCTATAGGGTTTCAGACCCCTTCAGCTCCTTGGGTGCTTTCTCTAGC  361

seq1  TCCTATATTGGGGGCCCTGTGTTCCATCCTATAGATGACTGTGAGCATCC  448
      ||||  ||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCTCCATTGGGGGCCCTGTGTTCCATCCAATAGATGACTGTGAGCATCC  411

seq1  ACTTCTGTATTTGCCAGGCACTGG  472
      ||||||||||||||||||||||||
seq2  ACTTCTGTATTTGCCAGGCACTGG  435


seq1: chrX_35252911_35254032
seq2: B6Ng01-289M03.g_68_1196

seq1  GAATTCACTTGTAGCTCATTGGTGGTTCCTGGGCCTTGCTGTGGGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGTAGCTCATTGGTGGTTCCTGGGCCTTGCTGTGGGAAAAT  50

seq1  AGCAAAACCTCTCCAGCCCACGCCCAAGAACAATAGGAAGGTGGGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACCTCTCCAGCCCACGCCCAAGAACAATAGGAAGGTGGGAGGCA  100

seq1  GTCTGCCCAGGATCCACTGTGCTAGCCTCTTTTGAGCACCCAGAATGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCCAGGATCCACTGTGCTAGCCTCTTTTGAGCACCCAGAATGCAC  150

seq1  AGTGATGAGACCAGGGTACCTCTTCCTGCTTGGTACTTCCTTTCTGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGAGACCAGGGTACCTCTTCCTGCTTGGTACTTCCTTTCTGGCCT  200

seq1  CCCAAATTAGTGACTATAGGCCTTTCCCCTTGTGACTAGGGCTGAGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATTAGTGACTATAGGCCTTTCCCCTTGTGACTAGGGCTGAGTGTA  250

seq1  ATTGTGGTCAGAGTACAGAGAGATACACACTCAATAAAACAATGTGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGTCAGAGTACAGAGAGATACACACTCAATAAAACAATGTGCCAC  300

seq1  AGGCTGTTTCAGGTCCTTGGTCCCAATATTGCTTTTAGAAATATGCTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTTCAGGTCCTTGGTCCCAATATTGCTTTTAGAAATATGCTAGG  350

seq1  TCTCTTACATTTATAGACCAGACTAAGGCGAATTCTGAGAGAAAATTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTACATTTATAGACCAGACTAAGGCGAATTCTGAGAGAAAATTCTC  400

seq1  TGAGTGACAGTGTTAAAAGTGAGTAAGAACATGGTCTCTTCACTCCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGACAGTGTTAAAAGTGAGTAAGAACATGGTCTCTTCACTCCTGTG  450

seq1  AGGCATGTGGGCTGCACAGACTTCTGAAGGCAACATCACCGTGCATGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGTGGGCTGCACAGACTTCTGAAGGCAACATCACCGTGCATGACA  500

seq1  CCCTTCCAAAAAAATAGGTTTTGTTTTGTTTTTTCAGAACACTTACCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCAAAAAAATAGGTTTTGTTTTGTTTTTTCAGAACACTTACCTGC  550

seq1  ACATCAGATTCATCCACACCCATCCATCGTGCAAGATCCCTCCTAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGATTCATCCACACCCATCCATCGTGCAAGATCCCTCCTAAAGAG  600

seq1  AAAAAGTTCCAACATTTAGCCTTTCTGGTGGAAATCAATTGTGTAAGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTCCAACATTTAGCCTTTCTGGTGGAAATCAATTGTGTAAGGAC  650

seq1  ATGTCCGATTTGGTTTTATATGTTTGGGCCCACACTTGTGTGCTCATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCGATTTGGTTTTATATGTTTGGGCCCACACTTGTGTGCTCATACA  700

seq1  CATTTACTTAC-AGTCACTATTCTT-AACATTTACCTTAAACCTAGCTTT  748
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  CATTTACTTACAAGTCACTATTCTTAAACATTTACCTTAAACCTAGCTTT  750

seq1  AGCAATGGGTTTCTTCCACAGACCAAATCTAAGGGTGTCCCCCAATACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGGTTTCTTCCACAGACCAAATCTAAGGGTGTCCCCCAATACAC  800

seq1  AGATGTCTCTTTGGTGAACTGACAATGT-AAAATCAGTGAAGAGAGCGTC  847
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGATGTCTCTTTGGTGAACTGACAATGTAAAAATCAGTGAAGAGAGCGTC  850

seq1  TGGGATGAAAAGCACTAGCAACATTTTAACGCGAGTTGGAATCCCTCCTG  897
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGGATGAAAAGCACTAGCAACATTTTAACGCGAGTTGGAAT-CCTCCTG  899

seq1  CTCTTCCTAGCCACGCCCCAGACTTCTCACCCG-TACTTCTGGAAACTCA  946
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTTCCTAGCCACGCCCCAGACTTCTCACCCGTTACTTCTGGAAACTCA  949

seq1  TTTACAACACTAAACATTGTCTAAATTTCCCAGTCTTGAACAGGGCAACA  996
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  TTTACAACACTAAACATTGTCTAAATTTCCAGGTCTTGAACAGGGCAACA  999

seq1  AAACATTTGTTTCCAGTCCGCAT-AGCTCCCACACCCCTACCCT-GGGAT  1044
      |||||||   |||||||| |||| ||||||||||  |||||||| |||||
seq2  AAACATT--GTTCCAGTCGGCATAAGCTCCCACA--CCTACCCTGGGGAT  1045

seq1  CTAGTTGCAGGCTGACAGTTCTAA--TTGCAGGCGGAAGATCCT-AATTG  1091
      ||||||||||||||||||||||||  | ||||||||||||| || |||||
seq2  CTAGTTGCAGGCTGACAGTTCTAAATTGGCAGGCGGAAGATTCTAAATTG  1095

seq1  CAGGCGCCAG-TCT--GGGGCAGGTGCCATTATT  1122
      |  ||||||| |||  ||||||||||||||||||
seq2  CCAGCGCCAGTTCTGGGGGGCAGGTGCCATTATT  1129


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