BAC Information

Click to search

BAC

Clone NameB6Ng01-290F22
ChromosomeX (Build37)
Map Location 3,191,798 - 3,192,892
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC385516, LOC434721, LOC668957
Downstream geneLOC100043932, OTTMUSG00000016406, LOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961, LOC100042159, LOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290F22.bB6Ng01-290F22.g
ACCGA087528GA087529
length1,1131,058
definitionB6Ng01-290F22.b B6Ng01-290F22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttgtagaatagcaactctcaactctcgaagcgtttgctcaaa
ttccatggtccaattctgtaacatatatcgagacaaagttttagacaaat
ttgttgctcttgtagaattttcaaactgaacagaagtaacacaaagacta
ggcatcttgtattcacagcccaattgagccaactgccaaagaatatccac
ttgctcttggactaggttgatgcgttgatttatcaacatcaacccacctt
gtatctgtgagttggctgtggcttgtttatctaaagccgttgtgaccatc
atagaaagctcgttaataatttgtattgtttgaacagtagtagatagagt
gagtgccgaggccatgatagaggctgcaactgccgctgtggccaccagtc
caactataatagcagaagtaccaaaatctcttttccctcgaaacaaagtc
aagctattaggggcatctataggaacaggaacaaatctaggcatgcgggt
aaccaaagcaaaaggatatttcttagcatcccagcataaggcataaaaac
atttttcttgtgagcaatctatctctatctgattctgatttaagcttttt
ttttacttaccacccacaaaaatgggggccatacacataccggggtggcg
gtaaaatttacctctttctgtttttaacattggaggtggtccatttaaaa
gaatttggactctgcttatcagaccgaccggtcttcaagttacttttcca
atcaatggtcaattctcctttctcactagaacctcctccaatcattgcca
tgggggcaagatcagtacagcttccattaaccccacaaagcaaccactga
tcaaaagggttagtattagttcggagggggtccatagtactaaaatcata
tccagcaaaagtatcattatactttctactaatatatgggggaaaaggaa
aaatatttctctactgcccaagtatattttttagcttgcaactatccagg
tagcgtacatctctatggaccttccttgcaaaagtgcattctagtgtgaa
gcagcttattcagaccttcacttttcggctggcacaatcctcttataact
atggcatcagcct

gaattccctatactgaggcaaagaactgtcacaggacatagggcctcttc
tcccattgatgacagactaggccatcctctgttacataggcagctaaaac
cacaagtcccactatgataggtggtttagtcccaaggagctctggggata
ctggttagttcatattgatgtttttcctatggggctgcaaaccccttcag
cctcttgggtactttttctagatccttcattggggatcctgtgctctgtc
caactgataagtgtgaacatccacttctggatttgccaggcactagcaaa
gcctctcaggagaaatccatgtcaggatcctgtcagtaagctttccttgg
catttgccatagtgtctgggtttggtggttgtttatggaatggaacccca
agtggggcagtctctggatggtcgttcctccagtctctggtctgaacatt
gtttctgtaactccttccatggacattttctttgcccttctaagaagaat
tctgagcttctgggctaatatccacttatcagtgagtgcatatcttgtgt
gttcttttgtaattgagttacctcacttaggatgatatcctccagatcca
tccatttgtctaagaatttcaaaaattcattgcttttaatagctgtgtag
tactccattttgtaaatgtaccacagtttctgtatccattcttctgttga
gggacatctgggttctttccagcttctggctattataaataaggctgcta
tgaacatagtgaagcatatgtccttatttacaagttggagcctcttctgg
gatgtatgcccaggaagttggtattgctcgattcttcttggtagtactat
gtccaattatctgaggaaatacccaaactgaatttctagagtgggttgta
tcggctttgcacatcaacaccaaactaatgggagggagtgtcccttcttt
tctccacattctcaccagccattctggctgtcacctgagttttttgattc
tttacccatttctggaccttgtggtggaggtgggaatctgcagggctggt
tcttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_3191798_3192892
seq2: B6Ng01-290F22.b_80_1154

seq1  CGTTTGCTCAAATTCCATTGTCCAATTCTGTAAC--ATAACGAGACAAAG  48
      |||||||||||||||||| |||||||||||||||  ||| ||||||||||
seq2  CGTTTGCTCAAATTCCATGGTCCAATTCTGTAACATATATCGAGACAAAG  50

seq1  ATTTTGACAAATTTGCTGCTCTTGTAGAATTTTCAAACTGAACAGAAGTA  98
       ||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTAGACAAATTTGTTGCTCTTGTAGAATTTTCAAACTGAACAGAAGTA  100

seq1  ACACAAAGGCCAGGTATCTTGTATTCACAGCCGAATTGAGCCAACTGCCA  148
      |||||||| | ||| ||||||||||||||||| |||||||||||||||||
seq2  ACACAAAGACTAGGCATCTTGTATTCACAGCCCAATTGAGCCAACTGCCA  150

seq1  AAGAATATCCACTTGCTCTTGGACTAGGTCGATGCATTGATTTATCAACA  198
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  AAGAATATCCACTTGCTCTTGGACTAGGTTGATGCGTTGATTTATCAACA  200

seq1  TCAACCCTCCTTGTATCTGTGAGTTGGCTGTGGCCTGTTTATCTAAGGCC  248
      ||||||| |||||||||||||||||||||||||| ||||||||||| |||
seq2  TCAACCCACCTTGTATCTGTGAGTTGGCTGTGGCTTGTTTATCTAAAGCC  250

seq1  ATTGTGACTGTCATAGAAAGCTCATTAATAGTTTGTATTGTTTGAACAGT  298
       |||||||  ||||||||||||| |||||| |||||||||||||||||||
seq2  GTTGTGACCATCATAGAAAGCTCGTTAATAATTTGTATTGTTTGAACAGT  300

seq1  AGTAGATAGAGTGAGTGCCGAGGCCGTGATAGAGGCTGCAACCACCGATG  348
      ||||||||||||||||||||||||| ||||||||||||||||  ||| ||
seq2  AGTAGATAGAGTGAGTGCCGAGGCCATGATAGAGGCTGCAACTGCCGCTG  350

seq1  TGGACACCAGTCCAACTATGATAGCAGAAATACCAAAATCTCTTTTCCCT  398
      ||| ||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TGGCCACCAGTCCAACTATAATAGCAGAAGTACCAAAATCTCTTTTCCCT  400

seq1  TGAAACAAATTCAATCTATTGGGGGCATCTACAGGAACAGGAACAAATCT  448
       |||||||| |||| ||||| |||||||||| ||||||||||||||||||
seq2  CGAAACAAAGTCAAGCTATTAGGGGCATCTATAGGAACAGGAACAAATCT  450

seq1  AGGCATGTGGGTAACCAAAGCAAAAGGATATTTCTTAGCATCCCAACATA  498
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGCATGCGGGTAACCAAAGCAAAAGGATATTTCTTAGCATCCCAGCATA  500

seq1  AGGCATAAAAACATTTTTCTTGTGAGCAATCTATCTCTATCTGATTCTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAAAAACATTTTTCTTGTGAGCAATCTATCTCTATCTGATTCTGA  550

seq1  TTTAAGC--TTCTGTTACTTACCACCCACAAAAAAGGGAACCATACACAT  596
      |||||||  || | |||||||||||||||||||| |||  ||||||||||
seq2  TTTAAGCTTTTTTTTTACTTACCACCCACAAAAATGGGGGCCATACACAT  600

seq1  ACCGGGGTGGTGGTAAAATTTACCTCTTTCTGTTTTTTATATCTAACATT  646
      |||||||||| |||||||||||||||||||||||||       |||||||
seq2  ACCGGGGTGGCGGTAAAATTTACCTCTTTCTGTTTT-------TAACATT  643

seq1  GGAGGTGGTCCATTTAAAAGAATTTGGACTCTTCTTATCAGACCAACCGG  696
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  GGAGGTGGTCCATTTAAAAGAATTTGGACTCTGCTTATCAGACCGACCGG  693

seq1  TCTTCAAGGTACTTTTCCATTCAAAGGTCAATTCTCCTTTCTCACTAGAA  746
      |||||||| |||||||||| |||| |||||||||||||||||||||||||
seq2  TCTTCAAGTTACTTTTCCAATCAATGGTCAATTCTCCTTTCTCACTAGAA  743

seq1  CCTCTTCCAATCATTGCCATGGGGGCGAGATCAGTACAGCTTCCATTAAC  796
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTCCTCCAATCATTGCCATGGGGGCAAGATCAGTACAGCTTCCATTAAC  793

seq1  CCCACAAAGCAACCACTGATCAAAAGGGTTAGTATTAGTTCGGAGGGGGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAGCAACCACTGATCAAAAGGGTTAGTATTAGTTCGGAGGGGGT  843

seq1  CCATAGTACTAAAATCATATCCAGCAAAAGTATCATTATACTCTCTACTA  896
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCATAGTACTAAAATCATATCCAGCAAAAGTATCATTATACTTTCTACTA  893

seq1  ATATAT-GGGGAAAAGGAAAAATATTTCTCTACTGCCCAAGTATATTTTT  945
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGGGGGAAAAGGAAAAATATTTCTCTACTGCCCAAGTATATTTTT  943

seq1  TAGCTTGGCAACCTGTCCAAGGTAACATTACATCTTCCATGGACCCTTCC  995
      |||||| |||| || ||| ||||| |  |||||| || ||||| ||||||
seq2  TAGCTT-GCAA-CTATCC-AGGTAGC-GTACATC-TCTATGGA-CCTTCC  987

seq1  TTGCAAAAGGGTGCCATTCTTGGTTGTGAAGGCGGCTTATTTCTAGATCT  1045
      ||||||||| |   |||||| |  |||||| || |||||||   ||| ||
seq2  TTGCAAAAGTG---CATTCTAG--TGTGAA-GCAGCTTATT--CAGACCT  1029

seq1  TCCACCTTTTCGGCTGGGCCACCATCCTCTTATAACTATGGTATCAGCCT  1095
      ||   ||||||||||||  ||| |||||||||||||||||| ||||||||
seq2  TC--ACTTTTCGGCTGG--CACAATCCTCTTATAACTATGGCATCAGCCT  1075


| Home | SequenceCutter | Blast | Download |