BAC Information

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BAC

Clone NameB6Ng01-291H16
ChromosomeX (Build37)
Map Location 82,207,303 - 82,330,015
singlet/doubletdoublet
Overlap geneDmd, LOC100042296
Upstream geneLOC100042306
Downstream geneLOC669833, 1600014K23Rik, Map3k7ip3, Gyk, LOC100042350, LOC629340, LOC100041562, 5430427O19Rik, 1700072E05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291H16.bB6Ng01-291H16.g
ACCGA088351GA088352
length1,1901,071
definitionB6Ng01-291H16.b B6Ng01-291H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,207,303 - 82,208,495)(82,328,938 - 82,330,015)
sequence
gaattcttccttgtcagccccagtgctatgcctctaccttcacccctttc
tatctgccctagtcgtgtaccctatgctcaaagcaccaaatgcctcttct
aaaactttggcccattggaatcactgttactcacattcacaagctaggat
ttccttatggttaactctacctaattcaagtgtctgtgttgtattttggt
tgtggttcacttgccaccaaagtgtatgaatataatgttcacatcttctc
cagtgatggacagtctactcatacttttatctttattctttttaaccagt
ctcaaagttttaagagcactgtagaaactactatacactgtatgcctcta
tggttcatttatctaagacaacggaatcattgtacccattaaatatcaac
actccatttcctcctccactatgacttggctaacaccactttattttgtt
tctgtaagattacttatcattggcaaaccaccctaaacagcctaatcttg
tctatgatgctctttgctatcaggtaccttataaaggtagagtggtgcaa
tatttgatcttttatttgaggacacatcttcaaattctatccacactatc
ataaatgatagattttcattcatttatatttgagtgttttatgaggcagg
gtcctactcgacagcccaggctctccacaaactcttaagcttcttgcctc
agactcctaagtgatgggattataaatatatacactatcaaacccaatga
ttttcatctgtgtttgtttgtttgtttgtttgtttgtttgtttttgtcac
cttcataaaatctggggccatctgggaaagaaaggaaccttaagagaaaa
tgcctccatatgattgacctgtatacaaatctgtgggagaaattttattg
atttatgattattgtgagagggcttagtacactttgaattatcccatacc
ttagcacatggtcctggattggacaggaaagccagctaagcaagccataa
agggcaatccagtaagcacattcctctaggacctatcttcttcttcagct
cctgcctccagattcccttcataagtgggagttgtgacttggaggatctt
cttagctgaataatctttttcttccctagtaaccatagatcatgtgttcg
tcatggcaagaaacacctagatacactcttttaaatctaa

gaattcaggaatcatcagtgaattccaacagagttctggtgcctaaaagt
ccgactggagacttaactgagctgtttgagtctgcatgtgttgttgctaa
gactctgcagcaccgctccctctggcttacagctggaagagataagtgtc
tgccttgtgaaagcgtgtaggatgcataagaaacttcaagatgtgacaca
gctgcgaactatgggaagctgtcccgggctgaagctcagagatgactacc
tagctaaaatatgcaaaaagtttcagaatgctaaaaagcccctcggttcc
ttaggccctcaggaggctgtcttctgctttccctgggagctgcctttcca
caactctgatccaaattgtaatgaggtcactagctctcccagcctgaact
caagagggctgagagtatccaagaagctatccgcgtttccatggtagctg
gtagaaagcacacttcagaaggatcaaaatgctcaagatcaaaacatccc
ttttcttgacttggattatttttttttatccatgggctgcttctagccta
ggaatagagagaatctagaagcaatggtgtcagttttccaagttgaactg
ccaactactgaaatgacagcccactcagaatttttgttcttgttattttt
gttgttgttgttattgttgttgttgttgttgtttctgagacagagccagc
cgtgactgttctggaactcactatgtagacctcaaactcacagagatcct
cctgcttcggcctcttgagtactggaattaaactgtgccaccacaccctg
ctcacttttaaggcaggaagtcaagtaatagcttgtctttttccccctcc
cctccccccttccccattacgtagtgtatgaactattcttgaccctagta
agcatctctgttttccctttattctataggaggtgacagtggaaagtgtc
agaagagaaaaacacctgttcaagttgtactcagaatctatacacattac
acaatgcttttcaagatagcagaaaacttcaggcacaacagaactgtgaa
tacaaagatagtacagagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_82207303_82208495
seq2: B6Ng01-291H16.b_46_1235

seq1  GAATTCTTCCTTGTCAGCCCCAGTGCTATGCCTCTACCTTCACCCCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTGTCAGCCCCAGTGCTATGCCTCTACCTTCACCCCTTTC  50

seq1  TATCTGCCCTAGTCGTGTACCCTATGCTCAAAGCACCAAATGCCTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCCCTAGTCGTGTACCCTATGCTCAAAGCACCAAATGCCTCTTCT  100

seq1  AAAACTTTGGCCCATTGGAATCACTGTTACTCACATTCACAAGCTAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTGGCCCATTGGAATCACTGTTACTCACATTCACAAGCTAGGAT  150

seq1  TTCCTTATGGTTAACTCTACCTAATTCAAGTGTCTGTGTTGTATTTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATGGTTAACTCTACCTAATTCAAGTGTCTGTGTTGTATTTTGGT  200

seq1  TGTGGTTCACTTGCCACCAAAGTGTATGAATATAATGTTCACATCTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTCACTTGCCACCAAAGTGTATGAATATAATGTTCACATCTTCTC  250

seq1  CAGTGATGGACAGTCTACTCATACTTTTATCTTTATTCTTTTTAACCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGGACAGTCTACTCATACTTTTATCTTTATTCTTTTTAACCAGT  300

seq1  CTCAAAGTTTTAAGAGCACTGTAGAAACTACTATACACTGTATGCCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTTTTAAGAGCACTGTAGAAACTACTATACACTGTATGCCTCTA  350

seq1  TGGTTCATTTATCTAAGACAACGGAATCATTGTACCCATTAAATATCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATTTATCTAAGACAACGGAATCATTGTACCCATTAAATATCAAC  400

seq1  ACTCCATTTCCTCCTCCACTATGACTTGGCTAACACCACTTTATTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTTCCTCCTCCACTATGACTTGGCTAACACCACTTTATTTTGTT  450

seq1  TCTGTAAGATTACTTATCATTGGCAAACCACCCTAAACAGCCTAATCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGATTACTTATCATTGGCAAACCACCCTAAACAGCCTAATCTTG  500

seq1  TCTATGATGCTCTTTGCTATCAGGTACCTTATAAAGGTAGAGTGGTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGATGCTCTTTGCTATCAGGTACCTTATAAAGGTAGAGTGGTGCAA  550

seq1  TATTTGATCTTTTATTTGAGGACACATCTTCAAATTCTATCCACACTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATCTTTTATTTGAGGACACATCTTCAAATTCTATCCACACTATC  600

seq1  ATAAATGATAGATTTTCATTCATTTATATTTGAGTGTTTTATGAGGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGATAGATTTTCATTCATTTATATTTGAGTGTTTTATGAGGCAGG  650

seq1  GTCCTACTCGACAGCCCAGGCTCTCCACAAACTCTTAAGCTTCTTGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACTCGACAGCCCAGGCTCTCCACAAACTCTTAAGCTTCTTGCCTC  700

seq1  AGACTCCTAAGTGATGGGATTATAAATATATACACTATCAAACCCAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCTAAGTGATGGGATTATAAATATATACACTATCAAACCCAATGA  750

seq1  TTTTCATCTGTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCTGTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGTCAC  800

seq1  CTTCATAAAATCTGGGGCCATCT-GGAAAG-AAGGAACCTTAAGAGAAAA  848
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  CTTCATAAAATCTGGGGCCATCTGGGAAAGAAAGGAACCTTAAGAGAAAA  850

seq1  TGCCTCCATATGATTGACCTGTATACAAATCTGTGGGAGAAATTTTATTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCATATGATTGACCTGTATACAAATCTGTGGGAGAAATTTTATTG  900

seq1  ATTTATGATTATTGTGAGAGGGCTTAGTACACTTTGAATTATCCCATACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGATTATTGTGAGAGGGCTTAGTACACTTTGAATTATCCCATACC  950

seq1  TTAGCACATGGTCCTGGATTGGACAGGAAAGCAAGCTAAGCAAGCCATAA  998
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTAGCACATGGTCCTGGATTGGACAGGAAAGCCAGCTAAGCAAGCCATAA  1000

seq1  AGGGCAATCCAGTAAGCAACATTCCTCTAGGACCTATC-TCTTCTTCAGC  1047
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  AGGGCAATCCAGTAAGC-ACATTCCTCTAGGACCTATCTTCTTCTTCAGC  1049

seq1  TCCTGCCTCCAGATTCCCTTCAT-AGT-GGAG-TGTGACTTG--AGATC-  1091
      ||||||||||||||||||||||| ||| |||| |||||||||   |||| 
seq2  TCCTGCCTCCAGATTCCCTTCATAAGTGGGAGTTGTGACTTGGAGGATCT  1099

seq1  TCTAAGCTGAAATAAATCTTTTCTTCCCTAAGTTACCATAGATCATGGTG  1141
      ||| ||||| |||||   ||||||||||| ||| |||||||||||| |||
seq2  TCTTAGCTG-AATAATCTTTTTCTTCCCT-AGTAACCATAGATCAT-GTG  1146

seq1  TTTCGTCATGGCAATAGAAACCAAACTAAGATACAACTTCTTTTAAATCT  1191
       ||||||||||||  ||||||   ||  |||||||   ||||||||||||
seq2  -TTCGTCATGGCA--AGAAAC---ACCTAGATACA--CTCTTTTAAATCT  1188

seq1  AA  1193
      ||
seq2  AA  1190


seq1: chrX_82328938_82330015
seq2: B6Ng01-291H16.g_64_1134 (reverse)

seq1  TTTCTTCCTGTACTATCCTTTGTATTTCACCATGTCTGTTGTGCCCTGAA  50
      |||||  ||||||||| ||||||| |||| ||  ||||||||| ||||||
seq2  TTTCT--CTGTACTAT-CTTTGTA-TTCA-CAGTTCTGTTGTG-CCTGAA  44

seq1  GTTTTCTGCTATTCCTGAAAAAGCA-TGTGTAATGTGTATAGATTCTGAG  99
      ||||||||||||  ||  ||||||| ||||||||||||||||||||||||
seq2  GTTTTCTGCTAT--CTTGAAAAGCATTGTGTAATGTGTATAGATTCTGAG  92

seq1  TACAACTTGAACAGGTGTTTTTCTCTTCTGACACTTTCCACTGTCACCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTTGAACAGGTGTTTTTCTCTTCTGACACTTTCCACTGTCACCTC  142

seq1  CTATAGAATAAAGGGAAAACAGAGATGCTTACTAGGGTCAAGAATAGTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAATAAAGGGAAAACAGAGATGCTTACTAGGGTCAAGAATAGTTC  192

seq1  ATACACTACGTAATGGGGAAGGGGGGAGGGGAGGGGGAAAAAGACAAGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTACGTAATGGGGAAGGGGGGAGGGGAGGGGGAAAAAGACAAGCT  242

seq1  ATTACTTGACTTCCTGCCTTAAAAGTGAGCAGGGTGTGGTGGCACAGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTGACTTCCTGCCTTAAAAGTGAGCAGGGTGTGGTGGCACAGTTT  292

seq1  AATTCCAGTACTCAAGAGGCCGAAGCAGGAGGATCTCTGTGAGTTTGAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGTACTCAAGAGGCCGAAGCAGGAGGATCTCTGTGAGTTTGAGG  342

seq1  TCTACATAGTGAGTTCCAGAACAGTCACGGCTGGCTCTGTCTCAGAAACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATAGTGAGTTCCAGAACAGTCACGGCTGGCTCTGTCTCAGAAACA  392

seq1  ACAACAACAACAACAATAACAACAACAACAAAAATAACAAGAACAAAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAACAACAATAACAACAACAACAAAAATAACAAGAACAAAAAT  442

seq1  TCTGAGTGGGCTGTCATTTCAGTAGTTGGCAGTTCAACTTGGAAAACTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTGGGCTGTCATTTCAGTAGTTGGCAGTTCAACTTGGAAAACTGA  492

seq1  CACCATTGCTTCTAGATTCTCTCTATTCCTAGGCTAGAAGCAGCCCATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTGCTTCTAGATTCTCTCTATTCCTAGGCTAGAAGCAGCCCATGG  542

seq1  ATAAAAAAAAATAATCCAAGTCAAGAAAAGGGATGTTTTGATCTTGAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAATAATCCAAGTCAAGAAAAGGGATGTTTTGATCTTGAGCA  592

seq1  TTTTGATCCTTCTGAAGTGTGCTTTCTACCAGCTACCATGGAAACGCGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCCTTCTGAAGTGTGCTTTCTACCAGCTACCATGGAAACGCGGA  642

seq1  TAGCTTCTTGGATACTCTCAGCCCTCTTGAGTTCAGGCTGGGAGAGCTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCTTGGATACTCTCAGCCCTCTTGAGTTCAGGCTGGGAGAGCTAG  692

seq1  TGACCTCATTACAATTTGGATCAGAGTTGTGGAAAGGCAGCTCCCAGGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATTACAATTTGGATCAGAGTTGTGGAAAGGCAGCTCCCAGGGA  742

seq1  AAGCAGAAGACAGCCTCCTGAGGGCCTAAGGAACCGAGGGGCTTTTTAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAGACAGCCTCCTGAGGGCCTAAGGAACCGAGGGGCTTTTTAGC  792

seq1  ATTCTGAAACTTTTTGCATATTTTAGCTAGGTAGTCATCTCTGAGCTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAACTTTTTGCATATTTTAGCTAGGTAGTCATCTCTGAGCTTCA  842

seq1  GCCCGGGACAGCTTCCCATAGTTCGCAGCTGTGTCACATCTTGAAGTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGACAGCTTCCCATAGTTCGCAGCTGTGTCACATCTTGAAGTTTC  892

seq1  TTATGCATCCTACACGCTTTCACAAGGCAGACACTTATCTCTTCCAGCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATCCTACACGCTTTCACAAGGCAGACACTTATCTCTTCCAGCTG  942

seq1  TAAGCCAGAGGGAGCGGTGCTGCAGAGTCTTAGCAACAACACATGCAGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGAGGGAGCGGTGCTGCAGAGTCTTAGCAACAACACATGCAGAC  992

seq1  TCAAACAGCTCAGTTAAGTCTCCAGTCGGACTTTTAGGCACCAGAACTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGCTCAGTTAAGTCTCCAGTCGGACTTTTAGGCACCAGAACTCT  1042

seq1  GTTGGAATTCACTGATGATTCCTGAATTC  1078
      |||||||||||||||||||||||||||||
seq2  GTTGGAATTCACTGATGATTCCTGAATTC  1071


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