BAC Information

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BAC

Clone NameB6Ng01-293I19
ChromosomeX (Build37)X (Build37)
Map Location 3,640,864 - 3,641,71031,692,421 - 31,693,427
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC385516, LOC434721, LOC668957, LOC100043932, OTTMUSG00000016406, LOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961
Downstream geneLOC100042159, LOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293I19.bB6Ng01-293I19.g
ACCGA089902GA089903
length1,0021,018
definitionB6Ng01-293I19.b B6Ng01-293I19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,640,864 - 3,641,710)(31,692,421 - 31,693,427)
sequence
gaattcaggaatggttcaggagtctgatgaaggtagaggagaggtgttga
agagtaggaggctccctgggatagcaggctattcaaggcagcttggcttg
gcccataaggctcagcaagcagggaagatgtgtgggaatagggattctat
cctctattatccaagagtctgatgaaggtataggacaggtggtagtagaa
tagaagtccctcaggtatagtgaaagaacctagtggggaaacacccactc
atatcccgagtcagacctctgaggactatcaatagcaggctgctccaggc
agcttggattggctgagagggttccccaatttgatttttgataagttcat
acccaataacatggctgctctggcaagcaatcatatccaaagtttttctg
ggtctctgtaatctggctggaaagtagatattctggattactctatgatc
tggctagaatacagacaggtccttacacctttaatagcaaacaatgtagg
taagtttaatttgtagaaggaaaccattatgtttgcaagtgacttctaat
tgagagaagataacaaatcagagcaaggtttgtcagaatgacttagacag
aagatatacccatctcaggagaacagcacaggaatgatttagctgccagt
gtccatggagaagtgtgtacctggaaggagagttggggatggatgggaag
gacagaagagagacaaatcagactaagataaagtttttgatcaaggccca
tatgtttaattcttaagtctgaatttaaagggtgaaacccatcccccact
ttgccagaatctcctcaggaaaacaagctcagctgctcagcaggtagtgg
ttttcttgaaggaaagctgcatatgtggcaggacaatagacttcacttag
gttgaagactccactctaggtggactaggcttactctagcaaaacaaggt
ctgatttagcctgctcaaggttgctggaagggcacagaaagaagtggtac
ct
gaattctcacctgaggaataccaaatgtctgagaagaacctgataaaatg
tccagcatccttagtcatcatggaaatgcaaatcaaaacaaccctgagat
tccacctcaccccagtcagaatggctaagttcaaaaattgaggtgactgc
agatgctggggaggatgtggagaaagaggaacactcctccattgttggtg
ggattgaaagcttgtacaacccctctggaaatcaatctggggggttcctt
agaaaattggacatagtactactggaagatgcagcaatacctctcctctt
catatatccagaagatgttccaactggtaagaaagacacatgttccatta
tgttcatagcagccttatttataatagccagaagctgtaaagaacctaga
tgtccctcaagagaggaatggatacaaaaaatgtggtacatttacacaat
ggagaattgtcatttttaaggtcgcatttaggtgaccatactgttgagat
ttcatgagtgtagtctacttatcacttatttggagcatagatattgattt
tgcattttctttgattgttatgccgatgttttctattgaatcttctgcac
ctgagattctctcttccatctcttatatttgttgctgatgcttgcatcta
tggttccagatttcttccctagcttttctatctccagcgttgcctcactt
ggggttttctttttgtgtctacttccctttttaactcttggatggtttta
ttcaattccattacttgtttggtcgtgttttcctgcaattctttaaggga
tttttgtgcttcctctttaaaggtcttctacctgtttagctgtgttctcc
tgtatttctttaagtgagttattaaagtccttcttgatgtcctctaccat
catcatgagagatgctattaaatcaggaactatcttttcagtgtgttggg
gtgccaggactggtggggtgggagtgctgcgttctgatgatgggtagtgg
tcctggatcctgctagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_3640864_3641710
seq2: B6Ng01-293I19.b_48_895

seq1  GAATTCAGGAATGGTTCAGGAGTCTGATGAAGGTAGAGGAGAGGTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAATGGTTCAGGAGTCTGATGAAGGTAGAGGAGAGGTGTTGA  50

seq1  AGAGTAGGAGGCTCCCTGGGATAGCAGGCTATTCAAGGCAGCTTGGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGAGGCTCCCTGGGATAGCAGGCTATTCAAGGCAGCTTGGCTTG  100

seq1  GCCCATAAGGTTCAGCAAGCAGGGAAGATGGGTGGGAAAAGGGATTCTAT  150
      |||||||||| ||||||||||||||||||| ||||||| |||||||||||
seq2  GCCCATAAGGCTCAGCAAGCAGGGAAGATGTGTGGGAATAGGGATTCTAT  150

seq1  CCTCTATTATCCAAGAGTCTGATGAAGGTATAGGACAGGTGGTAGTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTATCCAAGAGTCTGATGAAGGTATAGGACAGGTGGTAGTAGAA  200

seq1  TAGAAGTCCCTCAGGTATAGTGAAAGAACCTAGTGGGGAAACACCCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTCCCTCAGGTATAGTGAAAGAACCTAGTGGGGAAACACCCACTC  250

seq1  ATATCCCGAGTCAGACCTCTGAGGACTATCAATAGCAGGCTGCTCCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCGAGTCAGACCTCTGAGGACTATCAATAGCAGGCTGCTCCAGGC  300

seq1  AGCTTGGATTGGCTGAGAGGGTTCCCCAATTTGATTTTTGATAAGTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGATTGGCTGAGAGGGTTCCCCAATTTGATTTTTGATAAGTTCAT  350

seq1  ACCCAATAACATGGCTGCTCTGGCAAGCAATCATATCCAAAGTTTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATAACATGGCTGCTCTGGCAAGCAATCATATCCAAAGTTTTTCTG  400

seq1  GGTCTCTGTAATCTGGCTGGAAAGTAGATATTCTGGATTACTCTATGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGTAATCTGGCTGGAAAGTAGATATTCTGGATTACTCTATGATC  450

seq1  TGGCTAGAATACAGACAGGTCCTTACACCTTTAATAGCAAACAATGTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGAATACAGACAGGTCCTTACACCTTTAATAGCAAACAATGTAGG  500

seq1  TAAGTTTAATTTGTAGAAGGAAACCATTATGTTTGCAAGTGACTTCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAATTTGTAGAAGGAAACCATTATGTTTGCAAGTGACTTCTAAT  550

seq1  TGAGAGAAGATAACAAATCAGAGCAAGGTTTGTCAGAATGACTTAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAAGATAACAAATCAGAGCAAGGTTTGTCAGAATGACTTAGACAG  600

seq1  AAGATATACCCATCTCAGGAGAACAGCACAGGAATGATGTAGCTGCCAGT  650
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGATATACCCATCTCAGGAGAACAGCACAGGAATGATTTAGCTGCCAGT  650

seq1  GTCCATGGAGAAGTGTGTACCTGGAAGGAGAGTTGGGGATGGATGGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGAGAAGTGTGTACCTGGAAGGAGAGTTGGGGATGGATGGGAAG  700

seq1  GACAGAAGAGAGACAAATCAGACTAAGATAAAGTTTTTGATCAAGG-CCA  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GACAGAAGAGAGACAAATCAGACTAAGATAAAGTTTTTGATCAAGGCCCA  750

seq1  TATGTTTAATTCTTAAGTCTGAATTTAAAGGGTGAAACCCATCCCCCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAATTCTTAAGTCTGAATTTAAAGGGTGAAACCCATCCCCCACT  800

seq1  TTGCCAGAATCTCCTCAGGAAAACAAGCTCAGCTGCTCAGCAGGTAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGAATCTCCTCAGGAAAACAAGCTCAGCTGCTCAGCAGGTAGT  848

seq1: chrX_31692421_31693427
seq2: B6Ng01-293I19.g_78_1082

seq1  AGGAATACCAAATGTCTGAGAAGAACCTGATAAAATGTCCAGCATCCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATACCAAATGTCTGAGAAGAACCTGATAAAATGTCCAGCATCCTTA  50

seq1  GTCATCATGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCATGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACCCC  100

seq1  AGTCAGAATGGCTAAGTTCAAAAATTGAGGTGACTGCAGATGCTGGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAATGGCTAAGTTCAAAAATTGAGGTGACTGCAGATGCTGGGGAG  150

seq1  GATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGAAAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGAAAGCTT  200

seq1  GTACAACCCCTCTGGAAATCAATCTGGGGGGTTCCTTAGAAAATTGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAACCCCTCTGGAAATCAATCTGGGGGGTTCCTTAGAAAATTGGACA  250

seq1  TAGTACTACTGGAAGATGCAGCAATACCTCTCCTCTTCATATATCCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTACTGGAAGATGCAGCAATACCTCTCCTCTTCATATATCCAGAA  300

seq1  GATGTTCCAACTGGTAAGAAAGACACATGTTCCATTATGTTCATAGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCCAACTGGTAAGAAAGACACATGTTCCATTATGTTCATAGCAGC  350

seq1  CTTATTTATAATAGCCAGAAGCTGTAAAGAACCTAGATGTCCCTCAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTATAATAGCCAGAAGCTGTAAAGAACCTAGATGTCCCTCAAGAG  400

seq1  AGGAATGGATACAAAAAATGTGGTACATTTACACAATGGAGAATTGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGATACAAAAAATGTGGTACATTTACACAATGGAGAATTGTCAT  450

seq1  TTTTAAGGTCGCATTTAGGTGACCATACTGTTGAGATTTCATGAGTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGTCGCATTTAGGTGACCATACTGTTGAGATTTCATGAGTGTAG  500

seq1  TCTACTTATCACTTATTTGGAGCATAGATATTGATTTTGCATTTTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTATCACTTATTTGGAGCATAGATATTGATTTTGCATTTTCTTTG  550

seq1  ATTGTTATGCCGATGTTTTCTATTGAATCTTCTGCACCTGAGATTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATGCCGATGTTTTCTATTGAATCTTCTGCACCTGAGATTCTCTC  600

seq1  TTCCATCTCTTATATTTGTTGCTGATGCTTGCATCTATGGTTCCAGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTCTTATATTTGTTGCTGATGCTTGCATCTATGGTTCCAGATTT  650

seq1  CTTCCCTAGCTTTTCTATCTCCAGCGTTGCCTCACTTGGGGTTTTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTAGCTTTTCTATCTCCAGCGTTGCCTCACTTGGGGTTTTCTTTT  700

seq1  TGTGTCTACTTCCCTTTTTAACTCTTGGATGGTTTTATTCAATTCCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTACTTCCCTTTTTAACTCTTGGATGGTTTTATTCAATTCCATTA  750

seq1  CTTGTTTGGTCGTGTTTTCCTGCAATTCTTTAAGGGATTTTTGTGCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTGGTCGTGTTTTCCTGCAATTCTTTAAGGGATTTTTGTGCTTCC  800

seq1  TCTTT-AAGGTCTTCTACCTGTTTAGCTGTGTTCTCCTGTATTTCTTTAA  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAGGTCTTCTACCTGTTTAGCTGTGTTCTCCTGTATTTCTTTAA  850

seq1  GTGAGTTATTAAAGTCCTTCTTGATGTCCTCTACCATCATCATGAGAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTATTAAAGTCCTTCTTGATGTCCTCTACCATCATCATGAGAGAT  900

seq1  GCTATTAAATCAGGAACTATCTTTTCAGGTGTGTTGGGGTGCCCAGGACT  949
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  GCTATTAAATCAGGAACTATCTTTTCA-GTGTGTTGGGGTG-CCAGGACT  948

seq1  GGGTGGGGTGGGAGTGCTGCGTTCTGATGATGGTGAGTGGTCTTGGTTTC  999
       ||||||||||||||||||||||||||||||||  ||||||| ||| | |
seq2  -GGTGGGGTGGGAGTGCTGCGTTCTGATGATGGGTAGTGGTCCTGGATCC  997

seq1  TGCTAGTA  1007
      ||||||||
seq2  TGCTAGTA  1005