BAC Information

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BAC

Clone NameB6Ng01-294J15
ChromosomeX (Build37)
Map Location 53,433,288 - 53,576,602
singlet/doubletdoublet
Overlap geneGm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik
Upstream geneEG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439
Downstream geneZfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294J15.bB6Ng01-294J15.g
ACCGA090688GA090689
length7381,171
definitionB6Ng01-294J15.b B6Ng01-294J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,575,865 - 53,576,602)(53,433,288 - 53,434,469)
sequence
gaattccaggacagccagggctacacagagaaaccctatctcgaaaaacc
aaaaaaaaaaaaaaaaaaaaaaaaaaggcaaccacagatgagaaaccaga
acaaagtggattagtgattgtgctaaggggtattcaggatatgggtgact
ttggaatggagtttcaaggttgctgcatgttgtatttcttttgggggttt
tagttctatgttttgtttgtgtgtgtatatatcacaataatgtgtgtgtg
tgtgtgtggttcctcaggatttgaaagttaaattgcctttagttgccatg
gcacatcagacaggccacatactcatgttttgatcttttctcccctatac
tcagaaaagaactggcctaccttttcaagcaaacagctttatcatttcct
tagaaccacccaagagttcagttcagtgacacagctctgaagaaagaagg
gtgcctggaggctaacttagctgagaggaagctagatgagtcagaggata
gccccaggaagctgttaggtaaagcctggtgtttgagcctcagcaaatcg
ggagatacacgccctttggagaggaggcttatgggatctccttccccaac
agtgcattgaacagggaggggaaattgagtgctgtttgtctattgcttga
gcagttctaaacctttacaaacacaatgaggtcctataagaacatactct
taatgcatgcatgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattctcacactctacattacatggccacaaatagactgaacccttggc
tagcctccaacttgcagccatcgtcctagtttctgggacctaagtgctgg
aattacaggcctcatatacagtgtctaatttcactcatatttcttcgaga
aaggtatacgcattctgggacaaagacagtcagcctactttgatatatgg
gtgctaagagaaggatatacatgttgctttccaacttactcccagtgatg
ttatcctgggaattgaatcatcctctctacttcacttggtttgaggagac
aaacagtgtcttaggggctttcttggtcttagaatcaatctgtatgcttg
gctctgattgttgatggtctttctgtgttgaaaaaaatgagaactgggag
gatgcaagtttgccaccaaaactgagaagttatttagggtacagtatgac
tatgggttagtgtagagtcagaacgcagaatggtcagagtctgtgatgct
cacctgctagcatgctgacagaagtagtcagataggatccaagctcttca
ctaccaagtgcaagggatcctagggaatcagtaccatgccatctgcactg
ataagtagccatacaccgagtgacaggtggcaacagcaattgtttagatg
ttgaaaacaccctttggcatcagtgacttcagctcccatgatgatcatag
aacatcaactaccttcagtctcttccctctgtgcataatgagtgcatcca
aactaaatagcacaggatgaggaaggcagcaccctaattatcatgcatat
acctattgtgattccagatgttactttttgctacccttttgtgagtcttc
gtgtaatattttactagcatgcacaatactcagttttgacgtttcaaatg
ggtagctagtcactgtttctggataatagaatcatccagtatgtttcatg
ggagatggttttctgctttgtgtcatgtggtatctgtttcatgtaaagaa
tatatctttcttatgtagaaagtaacaaaggaaaactatttcacagttca
cttatctttgaaatcagattatttattcccccagaaccattggagcagct
ttgcatgaccttgttttggaacaaatcttctaatgggaagtacttctcca
cgttcatggatgaagctcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_53575865_53576602
seq2: B6Ng01-294J15.b_46_783 (reverse)

seq1  ACACACACACACACACACACACACACATGCATGCATTAAGAGTATGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACATGCATGCATTAAGAGTATGTTCT  50

seq1  TATAGGACCTCATTGTGTTTGTAAAGGTTTAGAACTGCTCAAGCAATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGACCTCATTGTGTTTGTAAAGGTTTAGAACTGCTCAAGCAATAGA  100

seq1  CAAACAGCACTCAATTTCCCCTCCCTGTTCAATGCACTGTTGGGGAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCACTCAATTTCCCCTCCCTGTTCAATGCACTGTTGGGGAAGGA  150

seq1  GATCCCATAAGCCTCCTCTCCAAAGGGCGTGTATCTCCCGATTTGCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCATAAGCCTCCTCTCCAAAGGGCGTGTATCTCCCGATTTGCTGAG  200

seq1  GCTCAAACACCAGGCTTTACCTAACAGCTTCCTGGGGCTATCCTCTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAACACCAGGCTTTACCTAACAGCTTCCTGGGGCTATCCTCTGACT  250

seq1  CATCTAGCTTCCTCTCAGCTAAGTTAGCCTCCAGGCACCCTTCTTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGCTTCCTCTCAGCTAAGTTAGCCTCCAGGCACCCTTCTTTCTTC  300

seq1  AGAGCTGTGTCACTGAACTGAACTCTTGGGTGGTTCTAAGGAAATGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTGTCACTGAACTGAACTCTTGGGTGGTTCTAAGGAAATGATAA  350

seq1  AGCTGTTTGCTTGAAAAGGTAGGCCAGTTCTTTTCTGAGTATAGGGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTGCTTGAAAAGGTAGGCCAGTTCTTTTCTGAGTATAGGGGAGA  400

seq1  AAAGATCAAAACATGAGTATGTGGCCTGTCTGATGTGCCATGGCAACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCAAAACATGAGTATGTGGCCTGTCTGATGTGCCATGGCAACTAA  450

seq1  AGGCAATTTAACTTTCAAATCCTGAGGAACCACACACACACACACACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATTTAACTTTCAAATCCTGAGGAACCACACACACACACACACATT  500

seq1  ATTGTGATATATACACACACAAACAAAACATAGAACTAAAACCCCCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGATATATACACACACAAACAAAACATAGAACTAAAACCCCCAAAA  550

seq1  GAAATACAACATGCAGCAACCTTGAAACTCCATTCCAAAGTCACCCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACAACATGCAGCAACCTTGAAACTCCATTCCAAAGTCACCCATAT  600

seq1  CCTGAATACCCCTTAGCACAATCACTAATCCACTTTGTTCTGGTTTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATACCCCTTAGCACAATCACTAATCCACTTTGTTCTGGTTTCTCA  650

seq1  TCTGTGGTTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGA  700

seq1  TAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTC  738
      ||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTC  738

seq1: chrX_53433288_53434469
seq2: B6Ng01-294J15.g_66_1236

seq1  GAATTCTCACACTCTACATTACATGGCCACAAATAGACTGAACCCTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACACTCTACATTACATGGCCACAAATAGACTGAACCCTTGGC  50

seq1  TAGCCTCCAACTTGCAGCCATCGTCCTAGTTTCTGGGACCTAAGTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCCAACTTGCAGCCATCGTCCTAGTTTCTGGGACCTAAGTGCTGG  100

seq1  AATTACAGGCCTCATATACAGTGTCTAATTTCACTCATATTTCTTCGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGGCCTCATATACAGTGTCTAATTTCACTCATATTTCTTCGAGA  150

seq1  AAGGTATACGCATTCTGGGACAAAGACAGTCAGCCTACTTTGATATATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATACGCATTCTGGGACAAAGACAGTCAGCCTACTTTGATATATGG  200

seq1  GTGCTAAGAGAAGGATATACATGTTGCTTTCCAACTTACTCCCAGTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAGAGAAGGATATACATGTTGCTTTCCAACTTACTCCCAGTGATG  250

seq1  TTATCCTGGGAATTGAATCATCCTCTCTACTTCACTTGGTTTGAGGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTGGGAATTGAATCATCCTCTCTACTTCACTTGGTTTGAGGAGAC  300

seq1  AAACAGTGTCTTAGGGGCTTTCTTGGTCTTAGAATCAATCTGTATGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGTCTTAGGGGCTTTCTTGGTCTTAGAATCAATCTGTATGCTTG  350

seq1  GCTCTGATTGTTGATGGTCTTTCTGTGTTGAAAAAAATGAGAACTGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATTGTTGATGGTCTTTCTGTGTTGAAAAAAATGAGAACTGGGAG  400

seq1  GATGCAAGTTTGCCACCAAAACTGAGAAGTTATTTAGGGTACAGTATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAGTTTGCCACCAAAACTGAGAAGTTATTTAGGGTACAGTATGAC  450

seq1  TATGGGTTAGTGTAGAGTCAGAACGCAGAATGGTCAGAGTCTGTGATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTTAGTGTAGAGTCAGAACGCAGAATGGTCAGAGTCTGTGATGCT  500

seq1  CACCTGCTAGCATGCTGACAGAAGTAGTCAGATAGGATCCAAGCTCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTAGCATGCTGACAGAAGTAGTCAGATAGGATCCAAGCTCTTCA  550

seq1  CTACCAAGTGCAAGGGATCCTAGGGAATCAGTACCATGCCATCTGCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAGTGCAAGGGATCCTAGGGAATCAGTACCATGCCATCTGCACTG  600

seq1  ATAAGTAGCCATACACCGAGTGACAGGTGGCAACAGCAATTGTTTAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGCCATACACCGAGTGACAGGTGGCAACAGCAATTGTTTAGATG  650

seq1  TTGAAAACACCCTTTGGCATCAGTGACTTCAGCTCCCATGATGATCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACACCCTTTGGCATCAGTGACTTCAGCTCCCATGATGATCATAG  700

seq1  AACATCAACTACCTTCAGTCTCTTCCCTCTGTGCATAATGAGTGCATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAACTACCTTCAGTCTCTTCCCTCTGTGCATAATGAGTGCATCCA  750

seq1  AACTAAATAGCACAGGATGAGGAAGGCAGCACCCTAATTATCATGCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATAGCACAGGATGAGGAAGGCAGCACCCTAATTATCATGCATAT  800

seq1  ACCTATTGTGATTCCAGATGTTACTTTTTGCTACCCTTTTGTGAGTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTGTGATTCCAGATGTTACTTTTTGCTACCCTTTTGTGAGTCTTC  850

seq1  GTGTAATATTTTACTAGCATGCACAATACTCAGTTTTGACGTTTCAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATATTTTACTAGCATGCACAATACTCAGTTTTGACGTTTCAAATG  900

seq1  GGTAGCTAGTCACTGTTTCTGGATAATAGAATCATCCAGTATGTTTCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTAGTCACTGTTTCTGGATAATAGAATCATCCAGTATGTTTCATG  950

seq1  GGAGATGGTTTTCTGCTTTGTGTTCATGTGGTTATTCTGTTTTCATGTAA  1000
      |||||||||||||||||||||| |||||||||   |||| ||||||||||
seq2  GGAGATGGTTTTCTGCTTTGTG-TCATGTGGT--ATCTG-TTTCATGTAA  996

seq1  AGAATATTAATCTTTTCTTTATGTAAGAAAGTTACAAAGGAAAACTATTT  1050
      |||||||  ||||||   |||||| ||||||| |||||||||||||||||
seq2  AGAATAT--ATCTTT--CTTATGT-AGAAAGTAACAAAGGAAAACTATTT  1041

seq1  CCACCAAGTTTCAC-TATCTTTGAAAATTCAGAATAATATTATTCCCCCA  1099
       |||  || ||||| |||||||||||  ||||| ||   |||||||||||
seq2  -CAC--AG-TTCACTTATCTTTGAAA--TCAGATTA--TTTATTCCCCCA  1083

seq1  G-ACCA-TGGAGCCAGCCTTGCATGA-CTTGTTTTTG-ACAAATCTTCTA  1145
      | |||| ||||| |||| |||||||| |||||||| | ||||||||||||
seq2  GAACCATTGGAG-CAGCTTTGCATGACCTTGTTTTGGAACAAATCTTCTA  1132

seq1  ATGGTAGTTACTTCTCCCACTTCAT-GATGAA-CTCCTG  1182
      |||| |  |||||||||   ||||| |||||| ||||||
seq2  ATGGGAAGTACTTCTCCACGTTCATGGATGAAGCTCCTG  1171