BAC Information

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BAC

Clone NameB6Ng01-296F18
ChromosomeX (Build37)
Map Location 122,360,366 - 122,455,838
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
Downstream geneEG665611, EG626048, LOC100040410, LOC100039903, LOC665679, 4932411N23Rik, Gm381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296F18.bB6Ng01-296F18.g
ACCGA091990GA091991
length1,0981,177
definitionB6Ng01-296F18.b B6Ng01-296F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,360,366 - 122,360,981)(122,454,645 - 122,455,838)
sequence
gaattctgtttacaagtattttattgagtatttttaaatcgatgtttata
agggcaattggtccaaaattctctttctttgttgagtctttttgtgactt
aagtatcacattgactgtatccccataaagtaaattttgtcaactttcct
tctgtttttatctggttaaataatttgtgtatcagtattagcactatttg
aaagtatggtataatcctgctctaaaactatctgaccttgtctagttttg
tttgggagatattaaatgacaggttatatttcctttggctataggactat
tcaagttgatcttgattcagctttagcaaattgtatctattgagaaaatt
gtcctttttattttttctattttggttttccatgtttctggagtacaggt
ttttgaagtgaaacccaatgatcccggtgtctgttgttatatcttcctct
tcatttctaattttgttaatttgtatgctttctctctctttcttttagtt
agttttgaaaaaaggtttgtccatcctgatgattttctcaaagaaccaaa
tatttgttgcctgattctttgtcttgttctctttgatttttttattgatt
ttagttttgagtttgattatttcctgctgtctatttagctttggtggctg
tgcttctatttgaaacagagttttctgacatgctgttaattggtgggtat
gagatctctacaatttcttatgaatacactcataactatgaaccttcatc
ttagctctgttttcattgtaccccatttacttggaattttgtgcaattca
ttgaattctagaaaatctttaattcctctttcctttttaaatttccttct
aattgccctgatggttgaaagctgatggcttctggaagcttaaaactttc
tggcttattttgtggttaaatttgcccacctctgatgattaatacctgtg
gtttaatagtggagtattgagttagacacactgcttccctgctaagtgct
aaaagttcttaacttgtgtagccaggagaaattcacattcaccaagaaaa
aagtacctcaccttcaaagagacttagactcattctagggagaagaga
gaattctttacatgattacaaaagaggtcgaatatacatgatatagactt
tagttgaattgaacttttataaagagaactttgataaaaaataatattta
ctctatgggtgctttcaaaaaatagaatggtttgcatggaacaagttagt
attggaaggattaaaagttccaagctatccttggttacatactaagtttg
ggccagcctaggctatatgacaacctgtctgaaaataggaaattactgga
accagtagtttatctttatgaatcctgtactttggagactgaatcatgag
caatatcagacgtacaaggactatcagtgccagaaagtataaacagaatt
tcccaaacaaaaataatttaagagttatacttaggggcttgattatgttg
ccacggaataaaagcactttgagatgagagtggtcagtaatgaggagtga
gtattgctcttgcacaggactcacgttgggtagctcgcagtcaccttcag
cttgagcttcaggaggcctctagcacctgtgggcatgtgcatttacttac
atatgtatgtatgtaccaacacacacacacacacacacacaaacttaaat
aatagggaaacgtactttgcatctatcagtttaaaggaagtttgatttga
atgtacttaaaagaggtgcctcataaccaaagtatgaaatctgctagtct
tccacaaattaggtgactcagagccactagtcaaataaattacaccctag
acatgggcatccatgaggtccactggataagtgtggatagagattgatgg
tagagctattggattatgtaaggggaggcttaaataaaactgagagattc
acagactcatgtgatataagctggcttttgttgtgtgttggtattatata
gtattataatcccttacttgctttcaagacatatttcatatagttcagac
tgtcctttatcctcacttaatagcttcaatatgactatgaaccactgata
ctcttgcttccttccagaacagcttaggatttaaagagagttactagcat
gctctacttgaatgcagtttagagatcaaacccaagctttatgcattgag
aatagtactctacgatttctacttcgcagctgcagcttcctgttaagaac
agtccaagagcacaagcattttcttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_122360366_122360981
seq2: B6Ng01-296F18.b_533_1144

seq1  TCTTTCTTTTAGTTAGTTTTGAAAAAAGGTTTGTCCATCCTGATGATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTTAGTTAGTTTTGAAAAAAGGTTTGTCCATCCTGATGATTTT  50

seq1  CTCAAAGAACCAAATATTTGTTGCCTGATTCTTTGTCTTGTTCTCTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAACCAAATATTTGTTGCCTGATTCTTTGTCTTGTTCTCTTTGA  100

seq1  TTTTTTTATTGATTTTAGTTTTGAGTTTGATTATTTCCTGCTGTCTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTGATTTTAGTTTTGAGTTTGATTATTTCCTGCTGTCTATTT  150

seq1  AGCTTTGGTGGCTGTGCTTCTATTTGAAACAGAGTTTTCTGACATGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGTGGCTGTGCTTCTATTTGAAACAGAGTTTTCTGACATGCTGT  200

seq1  TAATTGGTGGGTATGAGATCTCTACAATTTCTTATGAATACACTCATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGTGGGTATGAGATCTCTACAATTTCTTATGAATACACTCATAAC  250

seq1  TATGAACCTTCATCTTAGCTCTGTTTTCATTGTACCCCATTTACTTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACCTTCATCTTAGCTCTGTTTTCATTGTACCCCATTTACTTGGAA  300

seq1  TTTTGTGCAATTCATTGAATTCTAGAAAATCTTTAATTCCTCTTTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGCAATTCATTGAATTCTAGAAAATCTTTAATTCCTCTTTCCTTT  350

seq1  TTAAATTTCCTTCTAATTGCCCTGATGGTTGAAAGCTGATGGCTTCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTCCTTCTAATTGCCCTGATGGTTGAAAGCTGATGGCTTCTGGA  400

seq1  AGCTTAAAATTTTCTGGCTTATTTTGTGGTTAAATTTGCCCAACTCTGAT  450
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  AGCTTAAAACTTTCTGGCTTATTTTGTGGTTAAATTTGCCCACCTCTGAT  450

seq1  GATTAATACCTGTGGTTTAATAGTGGAGTATTGAGTTAGGACACAGTGCC  500
      |||||||||||||||||||||||||||||||||||||| |||||| || |
seq2  GATTAATACCTGTGGTTTAATAGTGGAGTATTGAGTTA-GACACACTG-C  498

seq1  TTCCCTGCTAAGTGCTAAAAGTTCTTTAAACTTGTGTAGCCA-GAGAAAT  549
      ||||||||||||||||||||||||||  |||||||||||||| |||||||
seq2  TTCCCTGCTAAGTGCTAAAAGTTCTT--AACTTGTGTAGCCAGGAGAAAT  546

seq1  TCACATTCA-CAAG-AAAAAGTA-CTCACTTCAAAAGAAGGATTTAGACT  596
      ||||||||| |||| |||||||| ||||| |  |||||  || |||||| 
seq2  TCACATTCACCAAGAAAAAAGTACCTCACCTTCAAAGA--GACTTAGAC-  593

seq1  TTATTTCTAGGAGAG-AGAGA  616
       |  ||||||| ||| |||||
seq2  -TCATTCTAGG-GAGAAGAGA  612

seq1: chrX_122454645_122455838
seq2: B6Ng01-296F18.g_67_1243 (reverse)

seq1  ATAAGAAA-----TGTTGTCTTGGACTTGTCCTTAACAGGAAGGCTTGCA  45
      ||||||||     |||  |||||||| ||| ||||||||||||   ||||
seq2  ATAAGAAAATGCTTGTGCTCTTGGAC-TGTTCTTAACAGGAAG--CTGCA  47

seq1  GCTGCAGAAGTAGAATTGGTAGAGTACTTTATTCTC-ATGCATGAAGCCT  94
      ||||| ||||||||| | |||||||||  ||||||| |||||| ||| ||
seq2  GCTGC-GAAGTAGAAATCGTAGAGTAC--TATTCTCAATGCATAAAG-CT  93

seq1  TGGGTTTGATCTCTAAAACTGCA-TCAAGTAGGGCATGCTGGTACCTCTC  143
      |||||||||||||| |||||||| |||||||| ||||||| ||| |||||
seq2  TGGGTTTGATCTCT-AAACTGCATTCAAGTAGAGCATGCTAGTAACTCTC  142

seq1  TTT-AATCCT-AGCTGTTCTGGAAAGTGAAAGCAGGAGTATCAGTGGTTC  191
      ||| |||||| |||||||||||||   | ||||| |||||||||||||||
seq2  TTTAAATCCTAAGCTGTTCTGGAA---GGAAGCAAGAGTATCAGTGGTTC  189

seq1  ATAGTCATATTG-AGCTATTAAGTGA-GATAAAGGACAGTCTGAACTATA  239
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  ATAGTCATATTGAAGCTATTAAGTGAGGATAAAGGACAGTCTGAACTATA  239

seq1  TGAAATATGTC-TCAAAGTATGTAA-GGATTATAATACTATATAATACCA  287
      ||||||||||| | |||| | |||| ||||||||||||||||||||||||
seq2  TGAAATATGTCTTGAAAGCAAGTAAGGGATTATAATACTATATAATACCA  289

seq1  ACACACAAACAAAAGCCAGCTTATATCACATGAGTCTGTGAATCTATCAG  337
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  ACACAC-AACAAAAGCCAGCTTATATCACATGAGTCTGTGAATCTCTCAG  338

seq1  TTTTATTTAAGCCTCCCCTTACATAATCCAATAGCTCTACCATCAATCTC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAAGCCTCCCCTTACATAATCCAATAGCTCTACCATCAATCTC  388

seq1  TATCCACATTTATCCAGTGGACCTCATGGATGCCCATGTCTAGGGTGTAA  437
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACACTTATCCAGTGGACCTCATGGATGCCCATGTCTAGGGTGTAA  438

seq1  TTTATTTGACTAGTGGCTCTGAGTCACCTAATTTGTGGAAGACTAGCAGA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGACTAGTGGCTCTGAGTCACCTAATTTGTGGAAGACTAGCAGA  488

seq1  TTTCATACTTTGGTTATGAGGCACCTCTTTTAAGTACATTTAAATCAAAC  537
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTCATACTTTGGTTATGAGGCACCTCTTTTAAGTACATTCAAATCAAAC  538

seq1  TTCCTTTAAACTGATAGATGCAAGGTACTTTTCCCTATTATTTAAGTTTG  587
      ||||||||||||||||||||||| |||| |||||||||||||||||||  
seq2  TTCCTTTAAACTGATAGATGCAAAGTACGTTTCCCTATTATTTAAGTT--  586

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGTACATACATACGTA  637
                ||||||||||||||||||||||||||||||||||||| ||
seq2  ----------TGTGTGTGTGTGTGTGTGTGTGTTGGTACATACATACATA  626

seq1  TGTAAGTAAATGCACATGAACACAGGTGCTAGAGGCCTCCTGAAGCTCAA  687
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  TGTAAGTAAATGCACATGCCCACAGGTGCTAGAGGCCTCCTGAAGCTCAA  676

seq1  GCTGAAGGTGACTGCGAGCTACCCAACGTGAGTCCTGTGCAAGAGCAATA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGTGACTGCGAGCTACCCAACGTGAGTCCTGTGCAAGAGCAATA  726

seq1  CTCACTCCTCATTACTGACCACTCTCATCTCAAAGTGCTTTTATTCTGTA  787
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  CTCACTCCTCATTACTGACCACTCTCATCTCAAAGTGCTTTTATTCCGTG  776

seq1  GCAACATAATCAAACCCCTAAGTATAACTCTTAAATTATTTTTGTTTGGG  837
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCAACATAATCAAGCCCCTAAGTATAACTCTTAAATTATTTTTGTTTGGG  826

seq1  AAATTCTGTTTATACTTTCTGGCACTGTTAGTCCTTGTACTTCTGATATT  887
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  AAATTCTGTTTATACTTTCTGGCACTGATAGTCCTTGTACGTCTGATATT  876

seq1  GCTCATGATTCAGTCTCCAAAGTACAGGATTCATAAAGATAAAGATAAAC  937
      ||||||||||||||||||||||||||||||||      ||||||||||||
seq2  GCTCATGATTCAGTCTCCAAAGTACAGGATTC------ATAAAGATAAAC  920

seq1  TACTGGTTCCAGTAATTTCCTATTTTCAGACAGATTGTCATATAGCCTAG  987
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TACTGGTTCCAGTAATTTCCTATTTTCAGACAGGTTGTCATATAGCCTAG  970

seq1  GCTGGCCCAAACTTAGTATGTAACCAAGGATAGCTTGGAACTTCTAATCC  1037
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTGGCCCAAACTTAGTATGTAACCAAGGATAGCTTGGAACTTTTAATCC  1020

seq1  TTCCAATACTAACTTGTTCCATGCAAACCATTCTATTTTTTGAAAGCACA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCCAATACTAACTTGTTCCATGCAAACCATTCTATTTTTTGAAAGCACC  1070

seq1  CATAGAGTAAATATTATTTCTTCTCAAAGTTCTCTTTATAAAAGTTCAAT  1137
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  CATAGAGTAAATATTATTTTTTATCAAAGTTCTCTTTATAAAAGTTCAAT  1120

seq1  TCAACTAAAGTCTATGTCATGTATATTCAACCTCTTTTGTAATCATGTAA  1187
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  TCAACTAAAGTCTATATCATGTATATTCGACCTCTTTTGTAATCATGTAA  1170

seq1  AGAATTC  1194
      |||||||
seq2  AGAATTC  1177