BAC Information

Click to search

BAC

Clone NameB6Ng01-297K10
ChromosomeX (Build37)
Map Location 41,732,366 - 41,733,395
singlet/doubletsinglet
Overlap genenone
Upstream geneGm362, LOC100039977, LOC100039987, LOC637141, Wdr40c
Downstream geneWdr40b, LOC665585, 1110059M19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297K10.bB6Ng01-297K10.g
ACCGA092958GA092959
length1,2211,141
definitionB6Ng01-297K10.b B6Ng01-297K10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggactctcaaatggctgataagaacctaaagaaatg
tttaacatttttagtcatcagggagatgcaaatcaaaacaacctgaaatt
ccacctcacactagtcagaatggctaatatcaaaaactcagatgacagca
gatgctggcaaggatgtagagaaagaggagcactcatccattgctggttg
gatttcaagctggtaaaatcagtctgaaaataaatctggtggttcctcag
aaaattggacatattattacatgatgacctagctatactaatctggggca
tataccggagaagatgttccaacatgtaataaggacaaatgttccactat
gttcatagcagccacatttataagagatagaagctagaaacaaccaggat
gtctctcagaagaggaatagaaacagaaaatgtgatacatttatacaatg
gaatactactcagttattaaaaattcatgaaatttacagacaaattgatg
aaacttgaaaatatcctgagtgagataactcattcacaaaagaacacaca
tggtatgcactcactgaaaagtggatattagccccaaagttcagaatacc
caagattcatttcacagactatatgatgcccaagaagaaggaagaacaaa
ctgtggatgcttcagtgcttcttagaagggtgaacaaaatactcacagga
ggagatatggagacaaagtgtggagcagagactgtaggaaaggccaacca
gagacttctccacctggggttctatcccatatagttaccaaaccttcgac
actattgtgggtgctgggaattgcttgctgacagaagcctgatatggctg
tctcctgagaggctctggcagagccttaaacgtacagaggaagatccttc
agctcaccattggactgagtgcttggcccccaatggaggagttggagaag
ggacttaaagggaactgagggttttgcagccccatgggggagaaaaaaca
atgtcagtttgccataccccccaggagaactgtggggactcgacacacaa
aaggtcacacatgggaggggcccatggcctccagccacatatgtggcaga
gatggcttgtcgcgtcaagggagacctgaatggacttgagggtgttcaat
gctctaggttagtaatgccatgcagactatgtgtggtagtgggaaaacac
cctctatgtgaatcagaatga

gaattctttgtttagctctgtaccccattttaaatggggttacttgcatt
tctggagtccagtttcttgagttctttgtatatattggatattagtcccc
tatcagatttaggattggtaaaaaccctttcccaatctgttggtggtctt
tttgtcttattgacaatgtcttttcaagctgtactacagagcaattgtga
taaaaacttcatggtactggtatagtgacagagaagtagaccaatggaat
agaattgacgacccagaaatgaacccacgcacctatggtcacttgatctt
tgacaagggagctaaaaccatccagtggaaaaaagacagcattttcaaca
aatggtgctggcacaactggcggttatcatgtagaagaacacaaattgat
ccattcctatctccttgtactaaggtcaaatctaagtggatcaaggagct
ccacataaaaccagagacactgaaacttacagaggagaaagtggggaaga
tatgggtacaggggaaatattcctgaacagaacagcaatggcttgtgctg
taagatcaggaattgacaaatgggacctcacaaaattgcaagcttctgaa
atataatctaaagaagagataatgatggtcatcaagagggttagagggta
aggaagattgccactaatcctgaaaacctgagttcaattctcagagagga
catatttccctcccacaatttgtcttcttgtctccaaatatgcaggctta
ggtatgtgtatacacagtgtgttcatacataagcatacatgaactttttt
ttaaaaagaaagaactatgaattttgaacatttttaaaaagagcagttac
agaacatacatatgaattgcagtgtctttgaacaaaagaagaaaagttag
cacaatctaatgggtaattaagttgattacaatgtaaataattaataatt
aaattgtaattactcaacgaatgattaatcgggatgcatggtgtatgctt
caaacacatttgatagtaggaaatagaaagattatgagaatttggaagtc
ttcacgttcaggtgattggcattgcctattgacaaaaatgaaaaatggat
agatcataaaggcatattccaaacacacttcactaagtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_41732366_41733395
seq2: B6Ng01-297K10.g_173_1208

seq1  GATTTAGGATTGGTAAAAACCCTTTCCCAATCTGTTGGTGGTCTTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGGATTGGTAAAAACCCTTTCCCAATCTGTTGGTGGTCTTTTTGT  50

seq1  CTTATTGACAATGTCTTTTCAAGCTGTACTACAGAGCAATTGTGATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGACAATGTCTTTTCAAGCTGTACTACAGAGCAATTGTGATAAAA  100

seq1  ACTTCATGGTACTGGTATAGTGACAGAGAAGTAGACCAATGGAATAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATGGTACTGGTATAGTGACAGAGAAGTAGACCAATGGAATAGAAT  150

seq1  TGACGACCCAGAAATGAACCCACGCACCTATGGTCACTTGATCTTTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGACCCAGAAATGAACCCACGCACCTATGGTCACTTGATCTTTGACA  200

seq1  AGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGG  250

seq1  TGCTGGCACAACTGGCGGTTATCATGTAGAAGAACACAAATTGATCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCACAACTGGCGGTTATCATGTAGAAGAACACAAATTGATCCATT  300

seq1  CCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAGCTCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAGCTCCACA  350

seq1  TAAAACCAGAGACACTGAAACTTACAGAGGAGAAAGTGGGGAAGATATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCAGAGACACTGAAACTTACAGAGGAGAAAGTGGGGAAGATATGG  400

seq1  GTACAGGGGAAATATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGGGAAATATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGA  450

seq1  TCAGGAATTGACAAATGGGACCTCACAAAATTGCAAGCTTCTGAAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATTGACAAATGGGACCTCACAAAATTGCAAGCTTCTGAAATATA  500

seq1  ATCTAAAGAAGAGATAATGATGGTCATCAAGAGGGTTAGAGGGTAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAGAAGAGATAATGATGGTCATCAAGAGGGTTAGAGGGTAAGGAA  550

seq1  GATTGCCACTAATCCTGAAAACCTGAGTTCAATTCTCAGAGAGGACATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCACTAATCCTGAAAACCTGAGTTCAATTCTCAGAGAGGACATAT  600

seq1  TTCCCTCCCACAATTTGTCTTCTTGTCTCCAAATATGCAGGCTTAGGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCCACAATTTGTCTTCTTGTCTCCAAATATGCAGGCTTAGGTAT  650

seq1  GTGTATACACAGTGTGTTCATACATAAGCATACATGAACTTTTTTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATACACAGTGTGTTCATACATAAGCATACATGAACTTTTTTTTAAA  700

seq1  AAGAAAGAACTATGAATTTTGAACATTTTTAAAAAGAGCAGTTACAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAACTATGAATTTTGAACATTTTTAAAAAGAGCAGTTACAGAAC  750

seq1  ATACATATGAATTGCAGTGTCTTTGAACAAAAGAAGAAAAGTTAGCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATGAATTGCAGTGTCTTTGAACAAAAGAAGAAAAGTTAGCACAA  800

seq1  TCTAAT-GGTAATTAAGTTGATTACAATGTAAATAATTAATAATT-AATT  848
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTAATGGGTAATTAAGTTGATTACAATGTAAATAATTAATAATTAAATT  850

seq1  GTAATTACTCAACGAAATGATTAATC-GGATGCATGTGGTATGCTTCAAA  897
      |||||||||||||| ||||||||||| |||||||||  ||||||||||||
seq2  GTAATTACTCAACG-AATGATTAATCGGGATGCATGGTGTATGCTTCAAA  899

seq1  CACATTTGATAGTAGGAAATAGAAAGATTAATGAGA--TTTGAAGTCTTC  945
      ||||||||||||||||||||||||||||| ||||||  || |||||||||
seq2  CACATTTGATAGTAGGAAATAGAAAGATT-ATGAGAATTTGGAAGTCTTC  948

seq1  ACGTTCAGTGGATTGGCATTTGCTTATGACAAAAATGAAAAATGGATAGA  995
      ||||||||  ||||||||||  ||  ||||||||||||||||||||||||
seq2  ACGTTCAGGTGATTGGCATTGCCTATTGACAAAAATGAAAAATGGATAGA  998

seq1  TCATAAAAGCATAT--CAAACACA-TTCACTAAGTAAT  1030
      ||||||| ||||||  |||||||| |||||||||||||
seq2  TCATAAAGGCATATTCCAAACACACTTCACTAAGTAAT  1036


| Home | SequenceCutter | Blast | Download |