BAC Information

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BAC

Clone NameB6Ng01-297L20
ChromosomeX (Build37)
Map Location 8,110,370 - 8,111,526
singlet/doubletsinglet
Overlap geneLOC546263
Upstream geneLOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn, Ftsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2
Downstream geneSsxb6, Ssxb3, EG627853, EG627857, LOC668977, LOC631002, Ssx9, Ssxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193, Lancl3, Xk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297L20.bB6Ng01-297L20.g
ACCGA093026GA093027
length1,1791,179
definitionB6Ng01-297L20.b B6Ng01-297L20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacattttgatccataggcagagtggtagaaggagagggagagg
ggagagagagaggagagagaaagagactgctggacactgaactgccttga
acttttgaagccctaagcccccagtaacacatcgactctaacaaggtcat
accactcaatccctctcaagtagtcactgagcatccaaatctatgagcct
acagggaccattcccatccaaaccagcatggtggctaagcaaacagccca
gagcaagctaaggaaggcaacttggtcacatgggagcagttgcatgattc
tagccaaattgcaaggcaatcttccttaaggccattgggtagaaaaccca
tgtagtgccatgagcctcaaagatgtgaagtaagaagagaagtagactgg
agcttttgcagaagaagatacaattattctccatccatgtttgtagcttt
tctctcttgctactttgcaggttcttttgtccccttttctttcaaacata
agccctcctctgagtttccagtccagtcccttccaaagtgtgtctttacc
gctccttcctcagttccccaacagtgagctcaaacacccccttctcccac
tttcctcaaaactagcagctccaaatgacaaccagggttatagtctatct
gctaagctcagcttctgctggctcacttgtcacaaaatatcttctctctc
tgttagcacaattatctttctactgtctcctaacaatatgtgtctggctt
ggctcaccttttcctagagttacctcagatattctaattttccctctggt
ttttgattaaatcaattggttcactccactctttctctctccctcctctt
ctcatttcctctgtccagcctcccctcccagattctccagtctgattacc
tttgtaaacactttgctaatatatcttggcaagcagaggcagctatggta
gctacagccaggcagagagcactaggagactcagggcagcggggctcctc
agcaggctgttgtgggtgattccttgaacttctctatcctcgaggaaaca
agttaaactgttccagaaagatgggtgatgattcctgaacgagtgagatg
cacgctgtttgtggttgtttccttggaagctaaaagcacaaggtgaacag
gtgatctcaaatagcctgggtgcagtttg
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccagaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagtcacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacatcattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatatggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcaaccct
ataggtggacacatatgactaaccagtaccccggagctctgactctagct
gcatattatatcaaaagatgcctagtcggtcatcactggaagagaggcca
attggacttgccactttatatgcccagttaaggatctcaagtcaaaaggg
atgtgttgccaggggaaaatgtgggctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_8110370_8111526
seq2: B6Ng01-297L20.b_50_1228 (reverse)

seq1  CAAACTGCACCCA-GCTATTTGGAACCACTTG-TCACC-TGTGC-TTTAG  46
      ||||||||||||| ||||||||  | ||| || ||||| ||||| |||||
seq2  CAAACTGCACCCAGGCTATTTGAGATCACCTGTTCACCTTGTGCTTTTAG  50

seq1  CCTCCA--GAAAC-ACCAC-AACA-CGTGCATCTCACTCG-TCA-GAATC  89
      | ||||  ||||| ||||| |||| ||||||||||||||| ||| |||||
seq2  CTTCCAAGGAAACAACCACAAACAGCGTGCATCTCACTCGTTCAGGAATC  100

seq1  ATCA-CCATC-TTCTGGAACAGTTTAACT--GTTCCTCGAGGATAGAG-A  134
      |||| ||||| ||||||||||||||||||   |||||||||||||||| |
seq2  ATCACCCATCTTTCTGGAACAGTTTAACTTGTTTCCTCGAGGATAGAGAA  150

seq1  GTCCAAGG-ATCACCCACAACAGCCCTGCTGA-GAGCCCCGCTGCCCTGA  182
      || ||||| |||||||||||||| |||||||| |||||||||||||||||
seq2  GTTCAAGGAATCACCCACAACAG-CCTGCTGAGGAGCCCCGCTGCCCTGA  199

seq1  GTCTCCT-GTGCTCTCTGCCT-GCTGTGGCTACCATAGCTGCCTCTGC-T  229
      ||||||| ||||||||||||| ||||| |||||||||||||||||||| |
seq2  GTCTCCTAGTGCTCTCTGCCTGGCTGTAGCTACCATAGCTGCCTCTGCTT  249

seq1  GCCAAGATATATTAGCAAAGTGTTTACAAAGGTAATCAGACTGGAGAATC  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGATATATTAGCAAAGTGTTTACAAAGGTAATCAGACTGGAGAATC  299

seq1  TGGGAGGGGAGGCTGGACAGAGGAAATGAGAAGAGGA-GGAGAGAG-AAG  327
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  TGGGAGGGGAGGCTGGACAGAGGAAATGAGAAGAGGAGGGAGAGAGAAAG  349

seq1  AGTGGAGTGAACCAATTGATTTAATCAAAAACCAGAGGGAAAATTAGAAT  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTGAACCAATTGATTTAATCAAAAACCAGAGGGAAAATTAGAAT  399

seq1  ATCTGAGGTAACTCTAGGAAAAGGTGAGCCAAGCCAGACACATATTGTTA  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGTAACTCTAGGAAAAGGTGAGCCAAGCCAGACACATATTGTTA  449

seq1  GGAGACAGTAGAAAGATAATTGTGCTAACAGAGAGAGAAGATATTTTGTG  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGTAGAAAGATAATTGTGCTAACAGAGAGAGAAGATATTTTGTG  499

seq1  ACAAGTGAGCCAGCAGAAGCTGAGCTTAGCAGATAGACTATAACCCTGGT  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGAGCCAGCAGAAGCTGAGCTTAGCAGATAGACTATAACCCTGGT  549

seq1  TGTCATTTGGAGCTGCTAGTTTTGAGGAAAGTGGGAGAAGGGGGTGTTTG  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTGGAGCTGCTAGTTTTGAGGAAAGTGGGAGAAGGGGGTGTTTG  599

seq1  AGCTCACTGTTGGGGAACTGAGGAAGGAGCGGTAAAGACACACTTTGGAA  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACTGTTGGGGAACTGAGGAAGGAGCGGTAAAGACACACTTTGGAA  649

seq1  GGGACTGGACTGGAAACTCAGAGGAGGGCTTATGTTTGAAAGAAAAGGGG  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGGACTGGAAACTCAGAGGAGGGCTTATGTTTGAAAGAAAAGGGG  699

seq1  ACAAAAGAACCTGCAAAGTAGCAAGAGAGAAAAGCTACAAACATGGATGG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAACCTGCAAAGTAGCAAGAGAGAAAAGCTACAAACATGGATGG  749

seq1  AGAATAATTGTATCTTCTTCTGCAAAAGCTCCAGTCTACTTCTCTTCTTA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATTGTATCTTCTTCTGCAAAAGCTCCAGTCTACTTCTCTTCTTA  799

seq1  CTTCACATCTTTGAGGCTCATGGCACTACATGGGTTTTCTACCCAATGGC  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATCTTTGAGGCTCATGGCACTACATGGGTTTTCTACCCAATGGC  849

seq1  CTTAAGGAAGATTGCCTTGCAATTTGGCTAGAATCATGCAACTGCTCCCA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGAAGATTGCCTTGCAATTTGGCTAGAATCATGCAACTGCTCCCA  899

seq1  TGTGACCAAGTTGCCTTCCTTAGCTTGCTCTGGGCTGTTTGCTTAGCCAC  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCAAGTTGCCTTCCTTAGCTTGCTCTGGGCTGTTTGCTTAGCCAC  949

seq1  CATGCTGGTTTGGATGGGAATGGTCCCTGTAGGCTCATAGATTTGGATGC  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGTTTGGATGGGAATGGTCCCTGTAGGCTCATAGATTTGGATGC  999

seq1  TCAGTGACTACTTGAGAGGGATTGAGTGGTATGACCTTGTTAGAGTCGAT  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGACTACTTGAGAGGGATTGAGTGGTATGACCTTGTTAGAGTCGAT  1049

seq1  GTGTTACTGGGGGCTTAGGGCTTCAAAAGTTCAAGGCAGTTCAGTGTCCA  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACTGGGGGCTTAGGGCTTCAAAAGTTCAAGGCAGTTCAGTGTCCA  1099

seq1  GCAGTCTCTTTCTCTCTCCTCTCTCTCTCCCCTCTCCCTCTCCTTCTACC  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTCTTTCTCTCTCCTCTCTCTCTCCCCTCTCCCTCTCCTTCTACC  1149

seq1  ACTCTGCCTATGGATCAAAATGTAGAATTC  1157
      ||||||||||||||||||||||||||||||
seq2  ACTCTGCCTATGGATCAAAATGTAGAATTC  1179