BAC Information

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BAC

Clone NameB6Ng01-298D13
ChromosomeX (Build37)
Map Location 89,503,381 - 89,504,555
singlet/doubletsinglet
Overlap geneMageb18
Upstream geneLOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, EG436259, EG668061
Downstream geneEG546347, LOC629568, LOC100042663, Rp23-438h3.2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298D13.bB6Ng01-298D13.g
ACCGA093385GA093386
length1,1601,195
definitionB6Ng01-298D13.b B6Ng01-298D13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggatagtttttttctttctcctcctccttggttttttattaa
ttaattcatgcaacaaatatttattgtatatttgcatttgaccccatggc
cttttacttttgtaaaaaggtttcttcttaaaattcatttattcttttct
gggattctagtatgttatctgaaattaagaagaaaagtctttgcatcttg
gtctctcagtcaccatttatgaaaggaacaaaaaatagacacagcctgtt
agtaaatggccactgcagaatatataggctgcttctcaaacatgaagcac
taaaaagaacatggaacaggcttcttaagagtacgtcttagagtaaattt
tatgtatattggtgactttgctgacaattaaaactcaaagattctgaact
tgatgacctactcatagctgttgctcctttccatttgtctgagtgacatt
gtctataatttcttgtctcctttgtcctttagcacctggcagaactgtta
ccacatgtgtcctgagctacactacttatactttccatgaaagacaaaac
attttatcactgaaattttcatatacactctagcaaaataataataataa
taataataataatagaaggatcatcatatatcaaccaactccaacatatg
tgaatgttagacaaatttttttcttcaccgcttttttgtttgttctaact
ttttattaatttatctcatatctcgtaaaacaagtctagatcatttactt
attatcacttattatagtatgtacctctgatacatatagatatctgtatg
tattaatatgttatctttgagattacatctagtatatttgtcaataagtt
cttaaaagttcttcatatttgatttatatttataatttgtatgattattt
cacaactctttttattagcttattaaataatatattttatgctgacattt
tcatgctttttcttcttgattctaatctccatctctctttcccacgccca
tattcttcctacttacactttcattctagtagtctctttccacttcatgc
tattttattcttttatcctatactaatcatgttacccccttataacagtt
ctctcctacggttcatgactgcatctatggccatgctcatgtaaatattg
catacaaaaa
gaattcagtactgcccctggtattacactatctctttgagtaaaagttag
gtcactgcccttcacaggaatttaccatcactaaggaagaaagaagtttc
tgaccataggagttcagaatagatatttagaattatagatgagttacacc
tatatacaggaatttacaatggtttagaaagtagatcgggctgtggtttt
agagtattgcattattcatgagatggttagctagaacggaactccctagt
tagaaccatgacttgggtgtgaaagcccttgccctaggagtgaaaagttt
tcacacctggcttctaagactatagctgaccttagatagggctgactctg
tctcagttattttattgcccagttcctgccagtctttgcgttttcattcc
tctgttctgtgtaagagtcattaagcatcccgttacctcatttgtacctt
gcgggtatgtcacccaacttccttattgtcttctgcataaaaagtctgat
gttcgatttcaaaaattacattcagattctacacacaacctctcctgtgt
gtgtctgtctgtcattcatccacgctttgcccaccccgttccacgcagac
acagggacccagaaggtctgcggcaggggactaatatccaatatatataa
agaactaaacaagatggactccagaaaatcaaataaccctattaaaaatg
aggtacagagctaaacaaataattctcaatttaggaatacagaatggctg
acaagcacctgaaaaaaatgttcaacatccccaatcatcagggaaatgca
aatcaaaacaaccttgagattccacctcacaccagtcaaaatggctaaga
tcaaaaattcagatgcccctcaacagaggaatggatacagaaaatgtggt
acatttacacaatggagtactactcagctattaaaaaagatgaatttatg
aaattcctagcccaatggatgggacctggagggcatcatcctgagtgagt
acccaatcacaaaggacttaaacaattttgttacctccactgatagtgga
tattaggccaggaaacttaggaataccagaatataggataacaattgcta
agcgcatggaaactcagagactaagaaccatttggtgaccttggcccttc
ttgaattggaacaaaacacccaatggaagggagttctacgcaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_89503381_89504555
seq2: B6Ng01-298D13.b_46_1205 (reverse)

seq1  TTTTTGTATGC-ATATTTACATGAGCATGTGCATAGATGCAGGTCATGAA  49
      ||||||||||| |||||||||||||||||  |||||||||| ||||||||
seq2  TTTTTGTATGCAATATTTACATGAGCATGGCCATAGATGCA-GTCATGAA  49

seq1  -CGTAGGAAGAGGACTGTTATAGGGGGTAAACAATGATTTAAGGTATAAG  98
       |||||| |||| ||||||||| ||||  ||| ||||||    |||||  
seq2  CCGTAGG-AGAGAACTGTTATAAGGGGGTAAC-ATGATT---AGTATA--  92

seq1  GGAATTAAAAGAAT-AAATAGCCATGAAGGTGGAAAGGAGACTACTAGGA  147
      |||  ||||||||| |||||| |||||| ||||||| |||||||||| ||
seq2  GGA--TAAAAGAATAAAATAG-CATGAA-GTGGAAA-GAGACTACTA-GA  136

seq1  ATGGAAAGGTGTAAGTAGGGAAGAATATGGGCGTGGGAAAGAGGAGATGG  197
      |||  || ||||||||| |||||||||||||||||||||||| |||||||
seq2  ATG--AAAGTGTAAGTA-GGAAGAATATGGGCGTGGGAAAGA-GAGATGG  182

seq1  AGATTAGAATCAAGAAGAAAAAGCATGAAAATGTCAGCATAAAATATATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGAATCAAGAAGAAAAAGCATGAAAATGTCAGCATAAAATATATT  232

seq1  ATTTAATAAGCTAATAAAAAGAGTTGTGAAATAATCATACAAATTATAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAAGCTAATAAAAAGAGTTGTGAAATAATCATACAAATTATAAA  282

seq1  TATAAATCAAATATGAAGAACTTTTAAGAACTTATTGACAAATATACTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATCAAATATGAAGAACTTTTAAGAACTTATTGACAAATATACTAG  332

seq1  ATGTAATCTCAAAGATAACATATTAATACATACAGATATCTATATGTATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCTCAAAGATAACATATTAATACATACAGATATCTATATGTATC  382

seq1  AGAGGTACATACTATAATAAGTGATAATAAGTAAATGATCTAGACTTGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTACATACTATAATAAGTGATAATAAGTAAATGATCTAGACTTGTT  432

seq1  TTACGAGATATGAGATAAATTAATAAAAAGTTAGAACAAACAAAAAAGCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGAGATATGAGATAAATTAATAAAAAGTTAGAACAAACAAAAAAGCG  482

seq1  GTGAAGAAAAAAATTTGTCTAACATTCACATATGTTGGAGTTGGTTGATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAAAAAAATTTGTCTAACATTCACATATGTTGGAGTTGGTTGATA  532

seq1  TATGATGATCCTTCTATTATTATTATTATTATTATTATTATTTTGCTAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGATCCTTCTATTATTATTATTATTATTATTATTATTTTGCTAGA  582

seq1  GTGTATATGAAAATTTCAGTGATAAAATGTTTTGTCTTTCATGGAAAGTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATGAAAATTTCAGTGATAAAATGTTTTGTCTTTCATGGAAAGTA  632

seq1  TAAGTAGTGTAGCTCAGGACACATGTGGTAACAGTTCTGCCAGGTGCTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGTGTAGCTCAGGACACATGTGGTAACAGTTCTGCCAGGTGCTAA  682

seq1  AGGACAAAGGAGACAAGAAATTATAGACAATGTCACTCAGACAAATGGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAGGAGACAAGAAATTATAGACAATGTCACTCAGACAAATGGAA  732

seq1  AGGAGCAACAGCTATGAGTAGGTCATCAAGTTCAGAATCTTTGAGTTTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAACAGCTATGAGTAGGTCATCAAGTTCAGAATCTTTGAGTTTTA  782

seq1  ATTGTCAGCAAAGTCACCAATATACATAAAATTTACTCTAAGACGTACTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAGCAAAGTCACCAATATACATAAAATTTACTCTAAGACGTACTC  832

seq1  TTAAGAAGCCTGTTCCATGTTCTTTTTAGTGCTTCATGTTTGAGAAGCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGCCTGTTCCATGTTCTTTTTAGTGCTTCATGTTTGAGAAGCAG  882

seq1  CCTATATATTCTGCAGTGGCCATTTACTAACAGGCTGTGTCTATTTTTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATATTCTGCAGTGGCCATTTACTAACAGGCTGTGTCTATTTTTTG  932

seq1  TTCCTTTCATAAATGGTGACTGAGAGACCAAGATGCAAAGACTTTTCTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCATAAATGGTGACTGAGAGACCAAGATGCAAAGACTTTTCTTC  982

seq1  TTAATTTCAGATAACATACTAGAATCCCAGAAAAGAATAAATGAATTTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCAGATAACATACTAGAATCCCAGAAAAGAATAAATGAATTTTA  1032

seq1  AGAAGAAACCTTTTTACAAAAGTAAAAGGCCATGGGGTCAAATGCAAATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAACCTTTTTACAAAAGTAAAAGGCCATGGGGTCAAATGCAAATA  1082

seq1  TACAATAAATATTTGTTGCATGAATTAATTAATAAAAAACCAAGGAGGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAATATTTGTTGCATGAATTAATTAATAAAAAACCAAGGAGGAG  1132

seq1  GAGAAAGAAAAAAACTATCCTGGAATTC  1175
      ||||||||||||||||||||||||||||
seq2  GAGAAAGAAAAAAACTATCCTGGAATTC  1160