BAC Information

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BAC

Clone NameB6Ng01-298E24
ChromosomeX (Build37)7 (Build37)
Map Location 88,695,368 - 88,695,88318,399,924 - 18,401,035
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC629471, LOC100041815, Gm44, LOC670074, LOC667972, LOC667976, Mageb2, EG278167
Downstream geneEG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, Mageb18, EG436259, EG668061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298E24.bB6Ng01-298E24.g
ACCGA093452GA093453
length9431,112
definitionB6Ng01-298E24.b B6Ng01-298E24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,695,368 - 88,695,883)(18,399,924 - 18,401,035)
sequence
gaattctttttttttccattttttattagctcatttacatttccaatgct
ataccaaaagtcccccatacccacccacccctactcccctacccacccac
tccccctttttggccctggcgttcccctgtactggggcatataaagtttg
cctgtccagtgggtctctctttccagtgatggccgactaggccatctttt
gatacatatgcagctagagtcaagaactctggggtactggtttgttcata
atgttgcacctacagggttgcagatctctttagctccttgtatactttct
ctaactcctccattgggggccctgtgatccatccaagaggtgactgtgaa
catccacttctgtgtttgctaggccccggcctagtctcacaagagacagc
tatatcacggttcttgcaacaaacgcttgctagtgtatgcaatggtgtca
tcatttggaggctaattatgggatggatccctggatatggcagtcttgat
ggtccatccttttgtctcagctccaaactttgtctctgtaactccttcca
tgggtgattgtttccaattctaagaaggggcaaagtgtccacactttggt
cttcgttcttcttcagtttcatgtgttttgcaaattgtaccttatatctc
actatactaagtttctgggctaatatccacttatcagtgagtacatatta
tttgagttcttttgtgattgggttacctcactcaggatgatgccctccag
gtccaaccatttgcctaggaatttcataaattcattctttttaatagctg
agtagtactccattgtataaatgtaccacattttttgtatccattcctct
gttgagggccatctgggttctttccagcttctggctattataaataaggc
ttctatgaacatagtggagcatgtgtcctttcttacaggttgg
gaattcctcacttggctgcacctgcagagaggtagacttgtgctgagtaa
ctcagacaaggatgtcagcctcaacccagacccttggacctctcaccaaa
aacgtgcacacgagttgaggaagacatgaggaaactatgggatcttcagt
gaccttggatccagacctctgtcctagactcagctcagagtgacagagga
cagaagagctaatttcagagcaacaaggcttagggggccctgctggaggt
aaaggagttcttcaaggatggagtactgagcagacatcagaggctgtaga
gaaggcagtgaatgctgagccttgtagacagtcaaggggaaagtcccata
cagaagttcatgggtaccaagtgcatgaaatttgtgtgctgacctccacc
gagtaggatagatacaccctcactcacagaccaaggctgattcatacctg
ctcagggctcagagatatttcttcctactaaatgcagaagaaccactttt
gagggtttccatttctttttcttttttccatttaggcccacttttaggtt
acaagaagcatctcaccccttctcaactcaaaattgcgttggtgccacct
agggttgaagaaaacatcaatgttattttgtgggtctttcagatgccaaa
gaagcttcaagcctttgcttggcacaaaggagtacttccacttgaccatt
tgaagatagcaagccattcattcctaaccaattcaaccatgctggggcat
gcatattatgacagattgacagtacgcaacgatgggtccttgcttctctt
gaatgtcacaaagaatgacacagggctttacaccctacgaaccatatctg
ttgatttgaaattagaatgggccattattgaagtccaagtaaacagtaat
gattctttgtgactcctgggtgatggtgggggtttattcttctctgtaaa
cttaaggacagtgagtttctattctactccctcccatctggaatgtgtac
ctctccacttgggtttgagcctttagtaaaagaacacatccatgggggca
atttgaaataatccgaagcctggaacccggcctgatctgcagacgtagta
tggtaactcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_88695368_88695883
seq2: B6Ng01-298E24.b_46_541 (reverse)

seq1  AGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGAC  50
      ||||||||||||||||||||||| |||||||| ||| |||||| | ||||
seq2  AGACTGCCATATCCAGGGATCCATCCCATAATTAGCCTCCAAATGATGAC  50

seq1  ACCATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTG  100
      |||||||||||||||||||||  ||| | | ||| |||  ||| ||||||
seq2  ACCATTGCATACACTAGCAAGCGTTTGTTGCAAGAACCGTGATATAGCTG  100

seq1  TCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCA  150
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  TCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACACAGAAGTGGATGTTCA  150

seq1  CAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAA  200
      |||||| ||  ||||||||||||||||| ||||||||||||| |||||||
seq2  CAGTCACCTCTTGGATGGATCACAGGGCCCCCAATGGAGGAGTTAGAGAA  200

seq1  AGTACCCAAGGAGCTAAAGAGATCTGCAACCCTATAGGTGGAACAACATT  250
      ||||  ||||||||||||||||||||||||||| ||||||   |||||||
seq2  AGTATACAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTG---CAACATT  247

seq1  ATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCA  300
      |||||| |||||||||||| ||| ||||||||||||||||||||||||||
seq2  ATGAACAAACCAGTACCCCAGAGTTCTTGACTCTAGCTGCATATGTATCA  297

seq1  AAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGC  350
      ||||||||||||||||||||||||||||||||||| |||| |||||| ||
seq2  AAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGACCCACTGGACAGGC  347

seq1  AGACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAG  400
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAG  397

seq1  TGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATA  450
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGGTGGGTAGGGGAGTAGGGGTGGGTGGGTATGGGGGACTTTTGGTATA  447

seq1  GCATTGGAAATGTAAATGAGCTAAATACCTAATAAAATTGGAAAAAAAGG  500
      ||||||||||||||||||||||||                  |||||| |
seq2  GCATTGGAAATGTAAATGAGCTAA-----------------TAAAAAATG  480

seq1  AAAAAAAAAAGAATTC  516
       |||||||||||||||
seq2  GAAAAAAAAAGAATTC  496

seq1: chr7_18399924_18401035
seq2: B6Ng01-298E24.g_66_1177

seq1  GAATTCCTCACTTGGCTGCACCTGCAGAGAGGTAGACTTGTGCTGAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACTTGGCTGCACCTGCAGAGAGGTAGACTTGTGCTGAGTAA  50

seq1  CTCAGACAAGGATGTCAGCCTCAACCCAGACCCTTGGACCTCTCACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACAAGGATGTCAGCCTCAACCCAGACCCTTGGACCTCTCACCAAA  100

seq1  AACGTGCACACGAGTTGAGGAAGACATGAGGAAACTATGGGATCTTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGCACACGAGTTGAGGAAGACATGAGGAAACTATGGGATCTTCAGT  150

seq1  GACCTTGGATCCAGACCTCTGTCCTAGACTCAGCTCAGAGTGACAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGATCCAGACCTCTGTCCTAGACTCAGCTCAGAGTGACAGAGGA  200

seq1  CAGAAGAGCTAATTTCAGAGCAACAAGGCTTAGGGGGCCCTGCTGGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGCTAATTTCAGAGCAACAAGGCTTAGGGGGCCCTGCTGGAGGT  250

seq1  AAAGGAGTTCTTCAAGGATGGAGTACTGAGCAGACATCAGAGGCTGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTTCTTCAAGGATGGAGTACTGAGCAGACATCAGAGGCTGTAGA  300

seq1  GAAGGCAGTGAATGCTGAGCCTTGTAGACAGTCAAGGGGAAAGTCCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGTGAATGCTGAGCCTTGTAGACAGTCAAGGGGAAAGTCCCATA  350

seq1  CAGAAGTTCATGGGTACCAAGTGCATGAAATTTGTGTGCTGACCTCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTCATGGGTACCAAGTGCATGAAATTTGTGTGCTGACCTCCACC  400

seq1  GAGTAGGATAGATACACCCTCACTCACAGACCAAGGCTGATTCATACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGATAGATACACCCTCACTCACAGACCAAGGCTGATTCATACCTG  450

seq1  CTCAGGGCTCAGAGATATTTCTTCCTACTAAATGCAGAAGAACCACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGCTCAGAGATATTTCTTCCTACTAAATGCAGAAGAACCACTTTT  500

seq1  GAGGGTTTCCATTTCTTTTTCTTTTTTCCATTTAGGCCCACTTTTAGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTCCATTTCTTTTTCTTTTTTCCATTTAGGCCCACTTTTAGGTT  550

seq1  ACAAGAAGCATCTCACCCCTTCTCAACTCAAAATTGCGTTGGTGCCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGCATCTCACCCCTTCTCAACTCAAAATTGCGTTGGTGCCACCT  600

seq1  AGGGTTGAAGAAAACATCAATGTTATTTTGTGGGTCTTTCAGATGCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGAAGAAAACATCAATGTTATTTTGTGGGTCTTTCAGATGCCAAA  650

seq1  GAAGCTTCAAGCCTTTGCTTGGCACAAAGGAGTACTTCCACTTGACCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTCAAGCCTTTGCTTGGCACAAAGGAGTACTTCCACTTGACCATT  700

seq1  TGAAGATAGCAAGCCATTCATTCCTAACCAATTCAACCATGCTGGGGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATAGCAAGCCATTCATTCCTAACCAATTCAACCATGCTGGGGCAT  750

seq1  GCATATTATGACAGATTGACAGTACGCAACGATGGGTCCTTGCTTCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTATGACAGATTGACAGTACGCAACGATGGGTCCTTGCTTCTCTT  800

seq1  GAATGTCACAAAGAATGACACAGGGCTTTACACCCTACGAACCATATCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCACAAAGAATGACACAGGGCTTTACACCCTACGAACCATATCTG  850

seq1  TTGATTTGAAATTAGAATGGGCCATTATTGAAGTCCAAGTAAACAGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGATTTGAAATTAGAATGGGCCATTATTGAAGTCCAAGTAAACAGT-AA  899

seq1  TGATTCTTTGTGACTCCTGGGTGATGGT-GGGGTTTATTCTTCTCTGTAA  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGATTCTTTGTGACTCCTGGGTGATGGTGGGGGTTTATTCTTCTCTGTAA  949

seq1  ACTTAA-GACAGTGAGGTTTCTATTCTACCTCCCTCCCATCTGGAATGTG  998
      |||||| |||||||| |||||||||||| |||||||||||||||||||||
seq2  ACTTAAGGACAGTGA-GTTTCTATTCTA-CTCCCTCCCATCTGGAATGTG  997

seq1  TA-CTCT-CACTTGGGTTTGAGCCTTTAGTAAAAGACACACAT-CAT-GG  1044
      || |||| |||||||||||||||||||||||||||| |||||| ||| ||
seq2  TACCTCTCCACTTGGGTTTGAGCCTTTAGTAAAAGA-ACACATCCATGGG  1046

seq1  GGCAAATTGAAATACATCAGAAGCCTTG-ACCCGGCTGGAACCTGCAGAC  1093
      ||||| |||||||| ||| ||||||| | |||||||  | | ||||||||
seq2  GGCAATTTGAAATA-ATCCGAAGCCTGGAACCCGGCCTG-ATCTGCAGAC  1094

seq1  GGTAGTATGGTAACTCAGT  1112
       ||||||||||||||||||
seq2  -GTAGTATGGTAACTCAGT  1112