BAC Information

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BAC

Clone NameB6Ng01-302F03
ChromosomeX (Build37)
Map Location 127,523,235 - 127,700,927
singlet/doubletdoublet
Overlap genenone
Upstream geneDiap2, LOC100040092, LOC665773
Downstream geneLOC665799, LOC670449, LOC245600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302F03.bB6Ng01-302F03.g
ACCGA096397GA096398
length1,140978
definitionB6Ng01-302F03.b B6Ng01-302F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,523,235 - 127,524,368)(127,700,196 - 127,700,927)
sequence
gaattcattcagaccattattaaatatataacaaggaatagaatcagagt
tcagtagcaaagcactagagacatacgttctggttaataattatccacca
atcaagagttttagttcagttattcaaccagttatgactatgaactttct
gttacagtcgaattaagtccatattttagcatttaatccacaaaataatc
acaaatcacagtttgcaatattttgctgatttgcaatacagactgagcaa
tcctaatttgagagaaacccttatgtctgattgcttctttaagtacctca
cattgatctttactttttgaacactagcttccatgagggtttagttggcc
aatatcccagctgtagagaaaatactaaaatgaatttattttttcatgtc
ctccatgtgactaaatggatgagatggggttctagcactaagagtgtttt
aatctttctccttactgttcttctaaatttactttcatggatatgtccca
tgatctgttatttttgcaatgtctaataatcttccttgtgtcaaatttat
tttaaacaacttatcaattccaatcttttaaaccaaaatctatcctatac
attgtatagtacaaaaccttactgtttcccactcaatttttttatttgta
tttaaacgttaaactactttccaaagggatttgctagcacatttaaaggg
gagattttctaatgataaaaaatacgaagtttctgttgaggttttgaatc
tagtatacagcacaaatcgtgaagaatgatccattgcatatttcaaaact
tctaacaaatgggtgtgtttattgcatccatttaatctgtctatggtata
ttatatgtataaatgatacatatacataacaaaacattattttctgtctt
tgtaaccatacaatttgtacttgtcaattgaaaatttaggaggaagatat
ttttccattttttttaaaacataattaaggaaacccagagtcacgtggtc
tccttttagtctctcagagcacttagtcatcaggggtatggatttctggg
gtttccactgttcaccacccttcagagactccctcacattcactgttgaa
tgaaatggcttgccaaagaagaaaaaaatccgtaattaga

gaattcttgcattatttgtagtcagttaagtgcttgcattccagtttctt
attgtctgtatgatgaatatttcaaggtctgtgtgtgactaacatgtgtc
acaaggagaagcaagcttctttgaagattactgagagatgatcacaccaa
tgggtatagcacgatggcattaagagccaatttaatctgaatttgttatt
ggcattttgttttatcatttagtttaagttatcctataactacttctttt
agtgtagtcccccaatttttagtttgttgaatttttattttcattcattt
cctaatagttttcttcttattttcttagttttccagtgtcctcctgttat
tggtttctgagaatttccactttggttaaaaacatgctttggatgatgtc
atacattttaagttcagccacaaatgcaaaatatgcattttcgccaaaac
aaaacaaaacaaaacaaaacaaaacaaaaccccattgtttgcacttgtga
aaacacgtgttttgctggtggttgataatctttgaattgctattcagtaa
aattggtttatattattgatcacatatgctacttcttgggtgattgtcta
tacttatgtgatgatgatcttcaattactgttaaactctttctatcgatt
ctaaaagaagtacttaggatgtcacttttaggtgcatatatatgtaaagc
tgttaggccttcctaatggattaatttaattaccactacaaaatgtcctt
ctgtgtgtttagtaaaaattttgcagtcactccagcattattttgcatag
tgttttacattgtatatgttttctataaatttaccttgaattatttgatg
tttatgattttaaattttgtctcttaaagacataacacaatttcagccat
ttaaagatgtagctatctcttgtgagactatccttggggcctagccaaac
acagaagtgggatgctcacagccagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_127523235_127524368
seq2: B6Ng01-302F03.b_45_1184

seq1  GAATTCATTCAGACCATTATTAAATATATAACAAGGAATAGAATCAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAGACCATTATTAAATATATAACAAGGAATAGAATCAGAGT  50

seq1  TCAGTAGCAAAGCACTAGAGACATACGTTCTGGTTAATAATTATCCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGCAAAGCACTAGAGACATACGTTCTGGTTAATAATTATCCACCA  100

seq1  ATCAAGAGTTTTAGTTCAGTTATTCAACCAGTTATGACTATGAACTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGTTTTAGTTCAGTTATTCAACCAGTTATGACTATGAACTTTCT  150

seq1  GTTACAGTCGAATTAAGTCCATATTTTAGCATTTAATCCACAAAATAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGTCGAATTAAGTCCATATTTTAGCATTTAATCCACAAAATAATC  200

seq1  ACAAATCACAGTTTGCAATATTTTGCTGATTTGCAATACAGACTGAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCACAGTTTGCAATATTTTGCTGATTTGCAATACAGACTGAGCAA  250

seq1  TCCTAATTTGAGAGAAACCCTTATGTCTGATTGCTTCTTTAAGTACCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATTTGAGAGAAACCCTTATGTCTGATTGCTTCTTTAAGTACCTCA  300

seq1  CATTGATCTTTACTTTTTGAACACTAGCTTCCATGAGGGTTTAGTTGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATCTTTACTTTTTGAACACTAGCTTCCATGAGGGTTTAGTTGGCC  350

seq1  AATATCCCAGCTGTAGAGAAAATACTAAAATGAATTTATTTTTTCATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCAGCTGTAGAGAAAATACTAAAATGAATTTATTTTTTCATGTC  400

seq1  CTCCATGTGACTAAATGGATGAGATGGGGTTCTAGCACTAAGAGTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTGACTAAATGGATGAGATGGGGTTCTAGCACTAAGAGTGTTTT  450

seq1  AATCTTTCTCCTTACTGTTCTTCTAAATTTACTTTCATGGATATGTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCTCCTTACTGTTCTTCTAAATTTACTTTCATGGATATGTCCCA  500

seq1  TGATCTGTTATTTTTGCAATGTCTAATAATCTTCCTTGTGTCAAATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTTATTTTTGCAATGTCTAATAATCTTCCTTGTGTCAAATTTAT  550

seq1  TTTAAACAACTTATCAATTCCAATCTTTTAAACCAAAATCTATCCTATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAACTTATCAATTCCAATCTTTTAAACCAAAATCTATCCTATAC  600

seq1  ATTGTATAGTACAAAACCTTACTGTTTCCCACTCAATTTTTTTATTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATAGTACAAAACCTTACTGTTTCCCACTCAATTTTTTTATTTGTA  650

seq1  TTTAAACGTTAAACTACTTTCCAAAGGGATTTGCTAGCACATTTAAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACGTTAAACTACTTTCCAAAGGGATTTGCTAGCACATTTAAAGGG  700

seq1  GAGATTTTCTAATGATAAAAAATACGAAGTTTCTGTTGAGGTTTTGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTCTAATGATAAAAAATACGAAGTTTCTGTTGAGGTTTTGAATC  750

seq1  TAGTATACAGCACAAATCGTGAAGAATGATCCATTGCATATTTCAAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATACAGCACAAATCGTGAAGAATGATCCATTGCATATTTCAAAACT  800

seq1  TCTAACAAATGGGTGTGTTTATTGCATCCATTTAATCTGTCTATGGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAAATGGGTGTGTTTATTGCATCCATTTAATCTGTCTATGGTATA  850

seq1  TTATATGTATAAATGATACATATACATAACAAAACATTATTTTCTGTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTATAAATGATACATATACATAACAAAACATTATTTTCTGTCTT  900

seq1  TGTAACCATACAATTTGTACTTGTCAATTGAAAATTTAGGAGGAAGATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCATACAATTTGTACTTGTCAATTGAAAATTTAGGAGGAAGATAT  950

seq1  TTTTCCATTTTTTTAAAAACATAATAAGGAAAACCCAGAGTCACGTGGTC  1000
      |||||||||||||| |||||||||| | | ||||||||||||||||||||
seq2  TTTTCCATTTTTTTTAAAACATAATTAAGGAAACCCAGAGTCACGTGGTC  1000

seq1  TCC-TTTAGTCTCCTCAGAGCCACTTAGTCATCAGGGG-ATGG-TTTCTG  1047
      ||| |||||||| ||||||| ||||||||||||||||| |||| ||||||
seq2  TCCTTTTAGTCT-CTCAGAG-CACTTAGTCATCAGGGGTATGGATTTCTG  1048

seq1  GGTTTTCCACTG-TCA-CACCCTTCAGAGACTCCCTCACATTCCACCTGT  1095
      || ||||||||| ||| ||||||||||||||||||||||||||   ||||
seq2  GGGTTTCCACTGTTCACCACCCTTCAGAGACTCCCTCACATTC--ACTGT  1096

seq1  --GATG-AATGCTTTGCCAAAGAAG-AAATAGTCCGT-ATTAGA  1134
         ||| ||||  |||||||||||| ||| | ||||| ||||||
seq2  TGAATGAAATGGCTTGCCAAAGAAGAAAAAAATCCGTAATTAGA  1140


seq1: chrX_127700196_127700927
seq2: B6Ng01-302F03.g_65_796 (reverse)

seq1  TAATTAAATTAATCCATTAGGAAGGCCTAACAGCTTTACATATATATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATTAATCCATTAGGAAGGCCTAACAGCTTTACATATATATGCA  50

seq1  CCTAAAAGTGACATCCTAAGTACTTCTTTTAGAATCGATAGAAAGAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAGTGACATCCTAAGTACTTCTTTTAGAATCGATAGAAAGAGTTT  100

seq1  AACAGTAATTGAAGATCATCATCACATAAGTATAGACAATCACCCAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAATTGAAGATCATCATCACATAAGTATAGACAATCACCCAAGAA  150

seq1  GTAGCATATGTGATCAATAATATAAACCAATTTTACTGAATAGCAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATATGTGATCAATAATATAAACCAATTTTACTGAATAGCAATTCA  200

seq1  AAGATTATCAACCACCAGCAAAACACGTGTTTTCACAAGTGCAAACAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATCAACCACCAGCAAAACACGTGTTTTCACAAGTGCAAACAATG  250

seq1  GGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGGCGAAAATGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGGCGAAAATGCAT  300

seq1  ATTTTGCATTTGTGGCTGAACTTAAAATGTATGACATCATCCAAAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCATTTGTGGCTGAACTTAAAATGTATGACATCATCCAAAGCATG  350

seq1  TTTTTAACCAAAGTGGAAATTCTCAGAAACCAATAACAGGAGGACACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACCAAAGTGGAAATTCTCAGAAACCAATAACAGGAGGACACTGG  400

seq1  AAAACTAAGAAAATAAGAAGAAAACTATTAGGAAATGAATGAAAATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAGAAAATAAGAAGAAAACTATTAGGAAATGAATGAAAATAAAA  450

seq1  ATTCAACAAACTAAAAATTGGGGGACTACACTAAAAGAAGTAGTTATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACAAACTAAAAATTGGGGGACTACACTAAAAGAAGTAGTTATAGG  500

seq1  ATAACTTAAACTAAATGATAAAACAAAATGCCAATAACAAATTCAGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTAAACTAAATGATAAAACAAAATGCCAATAACAAATTCAGATTA  550

seq1  AATTGGCTCTTAATGCCATCGTGCTATACCCATTGGTGTGATCATCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCTCTTAATGCCATCGTGCTATACCCATTGGTGTGATCATCTCTC  600

seq1  AGTAATCTTCAAAGAAGCTTGCTTCTCCTTGTGACACATGTTAGTCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCTTCAAAGAAGCTTGCTTCTCCTTGTGACACATGTTAGTCACAC  650

seq1  ACAGACCTTGAAATATTCATCATACAGACAATAAGAAACTGGAATGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCTTGAAATATTCATCATACAGACAATAAGAAACTGGAATGCAAG  700

seq1  CACTTAACTGACTACAAATAATGCAAGAATTC  732
      ||||||||||||||||||||||||||||||||
seq2  CACTTAACTGACTACAAATAATGCAAGAATTC  732


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