BAC Information

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BAC

Clone NameB6Ng01-303I04
ChromosomeX (Build37)
Map Location 75,779,099 - 75,780,271
singlet/doubletsinglet
Overlap genePrrg1
Upstream geneTbl1x, EG628893, LOC667606, Prkx, Pbsn, OTTMUSG00000017866, LOC100042001, 5430402E10Rik, LOC628976, Obp1a, EG546335, EG628991, LOC236874, EG667658, 4930480E11Rik, EG667672
Downstream geneLOC667679, LOC667684, 4921509A18Rik, LOC667700, EG546337, EG629116, LOC636082, EG667736, LOC100041373, EG636104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303I04.bB6Ng01-303I04.g
ACCGA097293GA097294
length1,1651,176
definitionB6Ng01-303I04.b B6Ng01-303I04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcaagctcttagggagtcggttgttttatgaccacaagagcat
tgcttaatggttttcaccgcagttagaacagatatctaaatgttgtgcca
actcataatgctttgtaccattgattttcatctttatccttctctcattt
actgtgctaaagttgtattggacttcttgtttttctctatttaagttcct
ttattaaaccttaaaaatataatgaacacatgaacacacacacacacaca
ccttcacaaattctattctttcctgcagcagtgaccacttgtgttacttg
ccattaaatctctaatattcaggaaaattactgaaacatgatattaagta
aatatttggttttggctttgagacaagatctcatatattccaggctggcc
ttcaaattgctatgtaactaaggatgacactgatcctcctgcctgcacag
cctactgctggaattataagtaaacatcaccatgctgaggtttgcatggg
cctgggaatcaaacacagagccctgtgaatgctaggcaaacagtctacca
agtaaacatctcttgccttaaagtaaataactatttaatgattaaagatt
tgactgaaagaatgtcagatttgttgtaagaaaatgcatgacaagatctt
gatctgtagtaacactggtgttgtattagtcagctttccttctctgtgat
caaatacctcagaaaatcaacttaaagagggaagaatttattttggtttc
agaagcttcagtccatggtcacttgactgttgtttctctccttgtgataa
gccagtgggtgtgctggaagaatgctgcactcttaaggcttccaggaaac
agacaacaacaaagggtatagagataggatgtgttcctttgggacatctt
tatttcatgttcttttgggacccatttcatgccactggtttcattttcta
aagtttttgctacctttgagtagcaacgtgaccaagccctttaacacatg
gtttttgtggtttcattttttttttttatatccagagcatcacaagtgtc
tccgtgaagattagcaaattacagtatttcagtataaatgcattgagaac
attacccattcttgaaatgatctactatagctgtttgacctgagaattga
ttcttcaagtattaa
gaattctcacctgaggaataccgaatggctgagaagcagctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaccaaccctgagat
tccacctcacatcagtcagaatggctaagatcaaaaattcagatgacagc
agatgctggattggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaaccttgtacaaccactctggaaatcagtttggcggttcctca
gaaaattggacatagtactacaggacgatcccccaatatctctcctgggc
gtatatccagaagatgttccaaatggtaagaaggacacttgctccactat
gttcatagcagccttatttataatagccaggaactggaaagaacccagat
gtccctcaacagaggaatggatacagaaaatgttgtacattcacataatg
gagtactattcagttattataaagaatgaatttatgaaattcctaggcaa
atgtatggacctggagggcatcatcctgagtgaggtaacccaatcagaaa
agaactcacataacatgtacacactgataagtggatactagcccagaaac
ttagaatacccatgatataagatacaatttgctaaacacatgaaactcaa
gaagaacgaagactaaagtgtggacactttgccccttcttagaagtggga
acaaaacacccatggaaggagttacagaaacaaagtttggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccaccccataat
cagcatccaaacgctgacaccattgcatatactagcaagattttatcgaa
aggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgctcacaatcagctaatggatggatcacagggctccc
aatggaggagctagaagaaagtacccaaggagctaaagggatcttcaccc
ctataggtggaacaacattatggaactaccagtacccctgagccttcttg
actctagctgcatatgtatccaaaaagatgccttagttcgtcatcacctg
taaaagaggaagtccatggacacgctgacttgtgtgcccaatacaaggtt
aacgccaagggccataaggggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_75779099_75780271
seq2: B6Ng01-303I04.b_45_1209 (reverse)

seq1  TTAATACATTTTGAAGAAATCAATTTCCTCATGTTCAAACAGCTAATAGT  50
      |||||||   |||||| ||||||||  |||| | |||||||||| |||||
seq2  TTAATAC---TTGAAG-AATCAATT--CTCA-GGTCAAACAGCT-ATAGT  42

seq1  TAAGATCATTTCAGGATTGGGTTAATG-TCTCAATGCATTTATACTGAAA  99
        ||||||||||| || |||| ||||| ||||||||||||||||||||||
seq2  --AGATCATTTCAAGAATGGG-TAATGTTCTCAATGCATTTATACTGAAA  89

seq1  TACTGTAATTTGCTAATCTTCACGGAGACACTTGTGATGCTCTGGATATT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TACTGTAATTTGCTAATCTTCACGGAGACACTTGTGATGCTCTGGATATA  139

seq1  AAAAAAAAAAATG-AACCACAAAAACCATGTGTTAAA-GGCTTGGTCACG  197
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  AAAAAAAAAAATGAAACCACAAAAACCATGTGTTAAAGGGCTTGGTCACG  189

seq1  TTGCTACTCAAAGGTAGCAAAAACTTTAGAAAATGAAACCAGTGGCATGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACTCAAAGGTAGCAAAAACTTTAGAAAATGAAACCAGTGGCATGA  239

seq1  AATGGGTCCCAAAAGAACATGAAATAAAGATGTCCCAAAGGAACACATCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTCCCAAAAGAACATGAAATAAAGATGTCCCAAAGGAACACATCC  289

seq1  TATCTCTATACCCTTTGTTGTTGTCTGTTTCCTGGAAGCCTTAAGAGTGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTATACCCTTTGTTGTTGTCTGTTTCCTGGAAGCCTTAAGAGTGC  339

seq1  AGCATTCTTCCAGCACACCCACTGGCTTATCACAAGGAGAGAAACAACAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTTCCAGCACACCCACTGGCTTATCACAAGGAGAGAAACAACAG  389

seq1  TCAAGTGACCATGGACTGAAGCTTCTGAAACCAAAATAAATTCTTCCCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGACCATGGACTGAAGCTTCTGAAACCAAAATAAATTCTTCCCTC  439

seq1  TTTAAGTTGATTTTCTGAGGTATTTGATCACAGAGAAGGAAAGCTGACTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTGATTTTCTGAGGTATTTGATCACAGAGAAGGAAAGCTGACTA  489

seq1  ATACAACACCAGTGTTACTACAGATCAAGATCTTGTCATGCATTTTCTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACACCAGTGTTACTACAGATCAAGATCTTGTCATGCATTTTCTTA  539

seq1  CAACAAATCTGACATTCTTTCAGTCAAATCTTTAATCATTAAATAGTTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATCTGACATTCTTTCAGTCAAATCTTTAATCATTAAATAGTTAT  589

seq1  TTACTTTAAGGCAAGAGATGTTTACTTGGTAGACTGTTTGCCTAGCATTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTAAGGCAAGAGATGTTTACTTGGTAGACTGTTTGCCTAGCATTC  639

seq1  ACAGGGCTCTGTGTTTGATTCCCAGGCCCATGCAAACCTCAGCATGGTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTCTGTGTTTGATTCCCAGGCCCATGCAAACCTCAGCATGGTGA  689

seq1  TGTTTACTTATAATTCCAGCAGTAGGCTGTGCAGGCAGGAGGATCAGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTTATAATTCCAGCAGTAGGCTGTGCAGGCAGGAGGATCAGTGT  739

seq1  CATCCTTAGTTACATAGCAATTTGAAGGCCAGCCTGGAATATATGAGATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTAGTTACATAGCAATTTGAAGGCCAGCCTGGAATATATGAGATC  789

seq1  TTGTCTCAAAGCCAAAACCAAATATTTACTTAATATCATGTTTCAGTAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAAAGCCAAAACCAAATATTTACTTAATATCATGTTTCAGTAAT  839

seq1  TTTCCTGAATATTAGAGATTTAATGGCAAGTAACACAAGTGGTCACTGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAATATTAGAGATTTAATGGCAAGTAACACAAGTGGTCACTGCT  889

seq1  GCAGGAAAGAATAGAATTTGTGAAGGTGTGTGTGTGTGTGTGTTCATGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAAGAATAGAATTTGTGAAGGTGTGTGTGTGTGTGTGTTCATGTG  939

seq1  TTCATTATATTTTTAAGGTTTAATAAAGGAACTTAAATAGAGAAAAACAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATATTTTTAAGGTTTAATAAAGGAACTTAAATAGAGAAAAACAA  989

seq1  GAAGTCCAATACAACTTTAGCACAGTAAATGAGAGAAGGATAAAGATGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCAATACAACTTTAGCACAGTAAATGAGAGAAGGATAAAGATGAA  1039

seq1  AATCAATGGTACAAAGCATTATGAGTTGGCACAACATTTAGATATCTGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATGGTACAAAGCATTATGAGTTGGCACAACATTTAGATATCTGTT  1089

seq1  CTAACTGCGGTGAAAACCATTAAGCAATGCTCTTGTGGTCATAAAACAAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGCGGTGAAAACCATTAAGCAATGCTCTTGTGGTCATAAAACAAC  1139

seq1  CGACTCCCTAAGAGCTTGCTGAATTC  1173
      ||||||||||||||||||||||||||
seq2  CGACTCCCTAAGAGCTTGCTGAATTC  1165