BAC Information

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BAC

Clone NameB6Ng01-303M22
ChromosomeX (Build37)
Map Location 116,404,684 - 116,405,807
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039551, Tgifx1, LOC665087
Downstream geneLOC385417, Pabpc5, LOC236983, LOC674318, EG545741, LOC100039461, Pcdh11x
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303M22.bB6Ng01-303M22.g
ACCGA097518GA097519
length1,1301,153
definitionB6Ng01-303M22.b B6Ng01-303M22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaaatttcctggattgattttatgaattcattttgatgtaaaa
aggctgtagacaatgttcaaatataatcaacagatttggaattgtactca
cctagttatcattattatatacaatttacagatctaggcttgggaaatat
gtagaagcatctgcattatactttttctaagaattatgtacagccagaat
cagtgttgtaaaaggactcaaagcttttgctatgagactagaagcagata
tttgactacaaacatcattgttctacaacctgaaacctagaaaacttatg
attattgataacttatacattgttgaccatttacttaggttatttctaaa
aatgaaaagcatatttgatcctatcatttgtagagatgttaaaatatgga
agtgtagattttctttttctttttttgtgttttcacaggacaagctttca
gtgaaaaaaataagattaattaattttaggtcttttgtaatcaagagagc
ttggtgaagaaaacagtcatgattctatgaaatactaacttttaagtttc
tttaaaatgtaaatatgcaaattagacaattacttttagtcacatatgaa
atcagatctaatgattaaatctagaagtcatatatgtagcatagtaatta
acgacaaagatacttatatgctttctaagtaggcattcattataccagta
caaatattcctcatattaagctctaatcagatcatagcatttatgtttta
atctgtgatttttttaaaaatatttttattaggtattttccaaatatact
ttttcaatgctacccccaaaagtcccccataaccccccccccactcccct
acccacccactcatacttttttggctctggcattcccctgtactgggggc
atataaagattggaaagtccaatgggcctctctttccagtgatgtccgac
taggccatcttttgatacatatgaagctagagtaatgagctcccgggtac
tggttagttcataattttgtttcacctataggttgcagatcctttagctc
cttgggtactttcttctagctcctcattgggggccctgtgatcaatagat
gactggtgagccatcaactttctgtgtttg
gaattcaatgaaaatgatcaaacatccctagttaaatagaatcagtcatc
attaaaaaactcacaaagacaacaaaaaaaataaagccagggtcaggtag
ttctctcgtctttcaatgaagagataatccaaatagaaataaaagcaata
ttgcctgattgatattatatgatcacatatgctgatacagaaaccacata
aggactcaacaaagaaacagattatatgccaatttccccccatgaacata
gatgcaaaaatgcttaattaaataggtgcaaactggatccaacaacacat
taacaggatcatccaccatgatcaatagactacatcccagagatgcagga
attattcaatattttaaaaatcagtaaatataatccaccatataaagaaa
acaaacaaataaacaaaccaaataatcatcttgctagttgcagaaaaaag
ctttcaaaaaatccaacactcttacaaaacaaaactcttgaagagattat
ggataaaataaatatacctaaacataataaaaacttgaagaaaactcctg
tactttggctttggaggagtaaccattgccagagatagcctgagaacttt
gtggtgtttcagtcttcagagagctacagagaagatccagacactgagat
gtggtagtctaccttttgcacctcccaacacgtgcaccctctttttaatt
gagtattagtgtggaagctttgtcattttttatgcatgtattggttcatt
cattcatataaaaataaaggcaattaacagcaaacatagctaatatcaaa
taaaatagagagaaacacaaagtaattccactaaaattatgaacaagaca
tgggttgtacactctctctacatctattcaatacagtgcttgaagctgta
gctagtgcaataagacagctaactgataaatattgaatagaagaagtcta
aatatcattataccacatgatatgatagtaaaaatgtgaccctaaatttt
ttaccagaaattcatacagctaaaaaaaccacaaccaccaacaacacaaa
aagaaacaaaacaaaaaaaaaaaaaccgctttagtgaatgggtagtccaa
ggataaatgaaaaaaattcattaagcttcttaattaaatacaaagatttt
gat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_116404684_116405807
seq2: B6Ng01-303M22.b_46_1175

seq1  GAATTCTTAAATTTCCTGGATTGATTTTATGAATTCATTTTGATGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAATTTCCTGGATTGATTTTATGAATTCATTTTGATGTAAAA  50

seq1  AGGCTGTAGACAATGTTCAAATATAATCAACAGATTTGGAATTGTACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTAGACAATGTTCAAATATAATCAACAGATTTGGAATTGTACTCA  100

seq1  CCTAGTTATCATTATTATATACAATTTACAGATCTAGGCTTGGGAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTATCATTATTATATACAATTTACAGATCTAGGCTTGGGAAATAT  150

seq1  GTAGAAGCATCTGCATTATACTTTTTCTAAGAATTATGTACAGCCAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGCATCTGCATTATACTTTTTCTAAGAATTATGTACAGCCAGAAT  200

seq1  CAGTGTTGTAAAAGGACTCAAAGCTTTTGCTATGAGACTAGAAGCAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGTAAAAGGACTCAAAGCTTTTGCTATGAGACTAGAAGCAGATA  250

seq1  TTTGACTACAAACATCATTGTTCTACAACCTGAAACCTAGAAAACTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTACAAACATCATTGTTCTACAACCTGAAACCTAGAAAACTTATG  300

seq1  ATTATTGATAACTTATACATTGTTGACCATTTACTTAGGTTATTTCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGATAACTTATACATTGTTGACCATTTACTTAGGTTATTTCTAAA  350

seq1  AATGAAAAGCATATTTGATCCTATCATTTGTAGAGATGTTAAAATATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAGCATATTTGATCCTATCATTTGTAGAGATGTTAAAATATGGA  400

seq1  AGTGTAGATTTTCTTTTTCTTTTTTTGTGTTTTCACAGGACAAGCTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGATTTTCTTTTTCTTTTTTTGTGTTTTCACAGGACAAGCTTTCA  450

seq1  GTGAAAAAAATAAGATTAATTAATTTTAGGTCTTTTGTAATCAAGAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAAAATAAGATTAATTAATTTTAGGTCTTTTGTAATCAAGAGAGC  500

seq1  TTGGTGAAGAAAACAGTCATGATTCTATGAAATACTAACTTTTAAGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAAGAAAACAGTCATGATTCTATGAAATACTAACTTTTAAGTTTC  550

seq1  TTTAAAATGTAAATATGCAAATTAGACAATTACTTTTAGTCACATATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGTAAATATGCAAATTAGACAATTACTTTTAGTCACATATGAA  600

seq1  ATCAGATCTAATGATTAAATCTAGAAGTCATATATGTAGCATAGTAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCTAATGATTAAATCTAGAAGTCATATATGTAGCATAGTAATTA  650

seq1  ACGACAAAGATACTTATATGCTTTCTAAGTAGGCATTCATTATACCAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACAAAGATACTTATATGCTTTCTAAGTAGGCATTCATTATACCAGTA  700

seq1  CAAATATTCCTCATATTAAGCTCTAATCAGATCATAGCATTTATGTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTCCTCATATTAAGCTCTAATCAGATCATAGCATTTATGTTTTA  750

seq1  ATCTGTGATTTTTTTAAAAATATTTTTATTAGGTATTTTCCAAATATAC-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCTGTGATTTTTTTAAAAATATTTTTATTAGGTATTTTCCAAATATACT  800

seq1  TTTTCAATGCTA-CCCCAAAAGTCCCCCATAA-CCCCCCCCCACTCCCCT  847
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TTTTCAATGCTACCCCCAAAAGTCCCCCATAACCCCCCCCCCACTCCCCT  850

seq1  ACCCACCCACTCATACTTTTTTGGCTCTGGCATTCCCCTGTACT-GGGGC  896
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACCCACCCACTCATACTTTTTTGGCTCTGGCATTCCCCTGTACTGGGGGC  900

seq1  ATATAAAGATTGG-AAGTCCAATGGGCCTCTCTTTCCAGTGATGTCCGAC  945
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGATTGGAAAGTCCAATGGGCCTCTCTTTCCAGTGATGTCCGAC  950

seq1  TAGGCCATCTTTTGATACATATGAAGCTAGAGTAATGAGCTCCCGGGTAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCATCTTTTGATACATATGAAGCTAGAGTAATGAGCTCCCGGGTAC  1000

seq1  TGGTTAGTTCATAATTTTGTTCCACCTATAGGTTGCAGATCCCTTTAGCT  1045
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  TGGTTAGTTCATAATTTTGTTTCACCTATAGGTTGCAGAT-CCTTTAGCT  1049

seq1  CCTTGGGTACTTTC-TCTAGCTCCTCCATTGGGGGCCCTGTGATCCAATA  1094
      |||||||||||||| |||||||||| |||||||||||||||||| |||||
seq2  CCTTGGGTACTTTCTTCTAGCTCCT-CATTGGGGGCCCTGTGAT-CAATA  1097

seq1  GATGACT-GTGAG-CATCCAC-TTCTGTGTTTG  1124
      ||||||| ||||| |||| || |||||||||||
seq2  GATGACTGGTGAGCCATCAACTTTCTGTGTTTG  1130