BAC Information

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BAC

Clone NameB6Ng01-303P21
Chromosome7 (Build37)X (Build37)
Map Location 50,472,465 - 50,473,59410,524,819 - 10,525,308
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620
Downstream geneZfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303P21.bB6Ng01-303P21.g
ACCGA097656GA097657
length1,140999
definitionB6Ng01-303P21.b B6Ng01-303P21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,472,465 - 50,473,594)(10,524,819 - 10,525,308)
sequence
gaattccactttctattttttaaagatttatttatttattatatataagt
agactctagctgtcttcaggcataccagaaaagagcttcagatctcacta
cagatggttgtaagccattaggtggttcatgggatttgaactcaggacct
ctgaaagaacagtcagtgatcttaaatgctgagccatctctccagcctga
gaattgcaccttcaatgtgtgtagaaaattgtgtttgaaatttgagggga
attgcattgaatttgtagattgcttttggtaccatggccatactaactat
gttttttggttgtctgtttttcaaaactggtttttttgagtgatgagctt
gtgttcttagatcttgttccatctaccaggcgcgccttgaactcagagag
ttctgcctggctctgcctctctgcctcttaagctctctgcctctgcattt
cccagtctttaagaattttatttgtagccaggcagtggaggcgcacaagc
ctttaatcccagcacttgggaggcagagtcaggctgatatttgagttaga
ggccaccctggtttacaaagtgagttcctggagaactagggctataaaga
gaaaccctgtctcaaaaaaacaaaacaaaacaaaaaaaaaggattaaaag
aagaagaaattcattgcttcctattaaagttctttaatattggtttctca
ttagaataatactttctaaatatttggcttcccttatgcttggaattaac
agttgcattgtaccattatatacctcatcctgcctgtgtggtccagtgac
ttgaaggcattcctgcaactctttcaggcttgacccttactaatctgtga
aatggaaaaaagaccactgggtgagggtcctctgacttccatccctttta
ttgggcatttaaaaatgaagtgggacttgagacaaaattgacttcactga
ccaactctgatgctgctgtattcacagcccagagaggctggggggatacg
gcaggagtagctttcatgtttcacaatattttgggtttgtcattccacga
tgagtagtcaggtcatccaaaattttggattatcattaaaagtcctggac
ctggccaatttgttcagttccataaaacctgggcattcaa
gaattcaaaattcaatagttgtttaatgtataaagaagaggaggagactg
gaactctaattgcctaaataacttttctgttgctgttatagaatatccag
ataaaagcaacttaaaaacaaaaatagtttctgttggctcagagttggag
gttgcaatccattgtgatggtgaaggcatggctacaggagtgtacagtgg
ttggccatacttcaccttcagtcaggaagcagagtgagaagtgacggact
attctcaggtcactgtatagtctaggatcctaacctatgaaaccagaagt
gggtgggtttcctcacttcagttaatctaatcatgataatcacccaaggc
atgctgagggcccatgtcccaggcgagtctggacctcaagtttccaatag
aggttaaccaccagagacacagacttacacagggcatccacaggaagaca
tggggcgaagactccctgtcttagtcagggtttctattcccgcacaaaca
tcatgcccaagaagcaagttgggaaggaaagagtttatttggcatacact
tccatactgctgttcatcaccaaggaagtcagggctggaactcaagcagg
tcagaaagcaggagctgatgagtaggccatggagggatgttccttactgg
cttgcttcccctggcttgctcagcctgctctcttatagaatcaagactac
cagcccagaaatggcaccacccacaaggggcccttcccccttgaccacta
attgaggaaatgccttacagttggatctcatggaggcatttcctcaactg
aagctcctttctctgtgataactccagctgcgtcaagttgacacaaaact
agccagtacactccctctgcaggccaaagaaagaggtgtcagaggactct
ctgttgtaaagaggttgacctagagcttccagactcagtactgaggaaaa
ataaacacgttgaagctgctgtgtgtgtgtgtgtgtgtgtgtgtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50472465_50473594
seq2: B6Ng01-303P21.b_46_1185

seq1  GAATTCCACTTTCTATTTTTTAAAGATTTATTTATTTATTATATATAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTCTATTTTTTAAAGATTTATTTATTTATTATATATAAGT  50

seq1  AGACTCTAGCTGTCTTCAGGCATACCAGAAAAGAGCTTCAGATCTCACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTAGCTGTCTTCAGGCATACCAGAAAAGAGCTTCAGATCTCACTA  100

seq1  CAGATGGTTGTAAGCCATTAGGTGGTTCATGGGATTTGAACTCAGGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTTGTAAGCCATTAGGTGGTTCATGGGATTTGAACTCAGGACCT  150

seq1  CTGAAAGAACAGTCAGTGATCTTAAATGCTGAGCCATCTCTCCAGCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAACAGTCAGTGATCTTAAATGCTGAGCCATCTCTCCAGCCTGA  200

seq1  GAATTGCACCTTCAATGTGTGTAGAAAATTGTGTTTGAAATTTGAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCACCTTCAATGTGTGTAGAAAATTGTGTTTGAAATTTGAGGGGA  250

seq1  ATTGCATTGAATTTGTAGATTGCTTTTGGTACCATGGCCATACTAACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTGAATTTGTAGATTGCTTTTGGTACCATGGCCATACTAACTAT  300

seq1  GTTTTTTGGTTGTCTGTTTTTCAAAACTGGTTTTTTTGAGTGATGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGGTTGTCTGTTTTTCAAAACTGGTTTTTTTGAGTGATGAGCTT  350

seq1  GTGTTCTTAGATCTTGTTCCATCTACCAGGCGCGCCTTGAACTCAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTAGATCTTGTTCCATCTACCAGGCGCGCCTTGAACTCAGAGAG  400

seq1  TTCTGCCTGGCTCTGCCTCTCTGCCTCTTAAGCTCTCTGCCTCTGCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTGGCTCTGCCTCTCTGCCTCTTAAGCTCTCTGCCTCTGCATTT  450

seq1  CCCAGTCTTTAAGAATTTTATTTGTAGCCAGGCAGTGGAGGCGCACAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTTTAAGAATTTTATTTGTAGCCAGGCAGTGGAGGCGCACAAGC  500

seq1  CTTTAATCCCAGCACTTGGGAGGCAGAGTCAGGCTGATATTTGAGTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTTGGGAGGCAGAGTCAGGCTGATATTTGAGTTAGA  550

seq1  GGCCACCCTGGTTTACAAAGTGAGTTCCTGGAGAACTAGGGCTATAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCCTGGTTTACAAAGTGAGTTCCTGGAGAACTAGGGCTATAAAGA  600

seq1  GAAACCCTGTCTCAAAAAAACAAAACAAAACAAAAAAAAAGGATTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCTCAAAAAAACAAAACAAAACAAAAAAAAAGGATTAAAAG  650

seq1  AAGAAGAAATTCATTGCTTCCTATTAAAGTTCTTTAATATTGGTTTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAATTCATTGCTTCCTATTAAAGTTCTTTAATATTGGTTTCTCA  700

seq1  TTAGAATAATACTTTCTAAATATTTGGCTTCCCTTATGCTTGGAATTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATAATACTTTCTAAATATTTGGCTTCCCTTATGCTTGGAATTAAC  750

seq1  AGTTGCATTGTACCATTATATACCTCATCCTGCCTGTGTGGTCCAGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCATTGTACCATTATATACCTCATCCTGCCTGTGTGGTCCAGTGAC  800

seq1  TTGAAGGCATTCCTGCAACTCTTTCAGGCTTGACCCTTACTAATCTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGCATTCCTGCAACTCTTTCAGGCTTGACCCTTACTAATCTGTGA  850

seq1  AATGGAAAAAAGACCACTGGGTGAGGGTCCTCTGACTTCCATCCCTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAAAAGACCACTGGGTGAGGGTCCTCTGACTTCCATCCCTTTTA  900

seq1  TTGGGCATTTAAAAATGAAGTGGGACTTGAGACAAAATTGACTTCACTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCATTTAAAAATGAAGTGGGACTTGAGACAAAATTGACTTCACTGA  950

seq1  CCAACTCTGATGCTGCTGTATTCACAGCCCAGAGAGGGCTGGGGGGATAA  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  CCAACTCTGATGCTGCTGTATTCACAGCCCAGAGA-GGCTGGGGGGATAC  999

seq1  GGGAGGAGTAGCTTTCATGTTTCACAATATTT---GGTTGTCATT-CACG  1046
      || |||||||||||||||||||||||||||||   | |||||||| ||||
seq2  GGCAGGAGTAGCTTTCATGTTTCACAATATTTTGGGTTTGTCATTCCACG  1049

seq1  ATGAGTAGTCAGGTCATC--AAATTTT-GATAATCATTAAAAGTCCTG--  1091
      ||||||||||||||||||  ||||||| ||| ||||||||||||||||  
seq2  ATGAGTAGTCAGGTCATCCAAAATTTTGGATTATCATTAAAAGTCCTGGA  1099

seq1  ACTGGCAAATTTG-TCAGTTTCAT-AAACCTGGGCAATCAA  1130
       ||||| |||||| |||||| ||| ||||||||||| ||||
seq2  CCTGGCCAATTTGTTCAGTTCCATAAAACCTGGGCATTCAA  1140

seq1: chrX_10524819_10525308
seq2: B6Ng01-303P21.g_537_1065 (reverse)

seq1  ------------TACACACACACACACAAAGGA-----------TTTAT-  26
                   ||||||||||||||| || |           ||||| 
seq2  TACACACACACACACACACACACACACACAGCAGCTTCAACGTGTTTATT  50

seq1  --------GGGAAGAGGCCAG-GGGGCATGGGCTTTCTCTGCTT-----G  62
              |    ||| |  |  |  |  || |   ||||  ||      
seq2  TTTCCTCAGTACTGAGTCTGGAAGCTCTAGGTCAACCTCT--TTACAACA  98

seq1  TACAGTCTTTTCACACTGCTTTCAATTTTCTTCTTCCCATCTTTTAGTAG  112
       | |||| | | ||||  |||||   |||   || |         ||   
seq2  GAGAGTCCTCTGACACCTCTTTC---TTTGGCCTGC-------AGAGGGA  138

seq1  GTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGA  162
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTGTACTGGCTAGTTTTGTGTCAACTTGACGCAGCTGGAGTTATCACAGA  188

seq1  GAAA-GAGCTTCAGTTGAGGAAATGCCTCCATGAGATCAAACTGTAAGGC  211
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGC  238

seq1  ATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCA  261
      |||| ||||||||||| ||||||||||| ||||||||||||||||  |||
seq2  ATTTCCTCAATTAGTGGTCAAGGGGGAAGGGCCCCTTGTGGGTGGTGCCA  288

seq1  TCTCTGGGCTGGTAGTCTTGGGTTTTATAAGAGAGCAGGCTGAG------  305
      | ||||||||||||||||| | || |||||||||||||||||||      
seq2  TTTCTGGGCTGGTAGTCTT-GATTCTATAAGAGAGCAGGCTGAGCAAGCC  337

seq1  -------GCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCT  348
             |||||||||||| |||||||||||||||||||   ||||||||
seq2  AGGGGAAGCAAGCCAGTAAGGAACATCCCTCCATGGCCTACTCATCAGCT  387

seq1  CCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAA  398
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  CCTGCTTTCTGACCTGCTTGAGTTCCAGCCCTGACTTCCTTGGTGATGAA  437

seq1  CAGCAGTATGGAAGTGTAAGCCGAATAAACCCTTTCCTCCCCAACTTGCT  448
      |||||||||||||||||| ||| ||||||| ||||||| |||||||||||
seq2  CAGCAGTATGGAAGTGTATGCCAAATAAACTCTTTCCTTCCCAACTTGCT  487

seq1  TCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAA  490
      |||||| |||||||||||||| ||||||||||||||||||||
seq2  TCTTGGGCATGATGTTTGTGCGGGAATAGAAACCCTGACTAA  529