BAC Information

Click to search

BAC

Clone NameB6Ng01-303P23
ChromosomeX (Build37)
Map Location 116,239,809 - 116,240,937
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000072994, LOC100039551, Tgifx1, LOC665087
Downstream geneLOC385417, Pabpc5, LOC236983, LOC674318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303P23.bB6Ng01-303P23.g
ACCGA097660GA097661
length1,1181,169
definitionB6Ng01-303P23.b B6Ng01-303P23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattttacctggatgtacagaggttttgtgaagaaatgttattaa
cttttgcaccctttcttaaaagtgtgattcatatttatcactgagataat
ctcttcctgtatattttgtggaaaaagattttgagccttttgttaataat
acatttatatacgtatgtttatgttttcaaatttatttgattcactatta
ttattgcaccatttctttataagattaaacaatagtctcccattaaagtc
atgggtagttttccatttggattcctgatattactcatcagttattatta
ttagtcatctacatttgtctatttatgttttttggcttttgagttttaga
ttaagaagcatttgaaaatgttttattctcaaacctttgtatattctctt
tgggtaatacttaattgaattttgattgtgtttttcttttctcaaaataa
atttagtttgaaattccattttccatagtcttaagtttcaagtttgtttt
ttaatttaattttatgtatattgctattttgcctaactatgtatctgtgc
aacatgtgcatatatgataattatgtagcccagaagagtgtatcagattt
tcttaaactgaatgctggtcctctgaaagcacagctagtctttttacctt
acagaatcatcattccaaatgattttctcattaacatgttgtcttaggtt
ttccattgctgtgatgagacaccatgaccaagacaccttttataaagcca
aatatttaatcaggggtggcttacaggttttgaggttcagtctattatca
tgaggctgagaagcatgagagcatctaggcaagcatggcactggaggagc
tgagagttctacatcttgctctgaagacaaacagggacgagactggcttc
caggcagctatgagaacatcttcaagcctacctcaaaagtaacaaatttc
ttccaatcaggactcactaatccaaataggtcacatctcctatagtgcca
ctccctggaccaagcatatcagccaccatacatatgtagaattttctaag
tgtactcatctatgggtataatataatccacactttcaattctgttagct
ttctctagatttttctat

gaattctttgtttagcactgtactgtaccccatttttaaaagggttattt
gtttctctgaagtctaacttcttgtgttctttgtatgtattggatattag
gcctctatcagttataggattggtaaagatcttttcccaatctgttggtt
ggatttttgtcttatttacagtgtcctttgccttacagatgctttgaagt
tttatgaggtcccatttgtgaatttttgatcttatatcacaagccattgg
tgttcttttcaggaactttttccctgttcccttatgttcgaagttcttcc
acagttactcctcaataagtttcagtgtctcttgttttatgtggaggtcc
ttggttcatttagacttgagctttttacaaggagataagaatggaacaat
tcacattcttctacatgctaactgccagttgagacagcactattcattta
aaatgttgtcttttatccgctggatgattttagcttctttgtccaagatc
aagtgaccataggtgtgtgggttcatttctggattgtcacttctattcca
ttgatctacctgcctatcactataccaatactgtacagtttgtatcacaa
ttgctctgtagtacagcttgaggtcaggaatggtgattgccccagaagtt
attttattgttgagaatagttttcaacgtcctatgttttttgtcattcca
gatgaatttgcatattgttctttctaactctgtgaagaattgtgttggaa
ttttgatggtattacattgaatccatagattgctttaggcaagatggcca
ttcttactatattaatcctgacaatccatgagcatgggagatctttacac
cttctgagatcttcttagatttcttccttcaaagacgaaggttttatctt
acagatctttcacttgcttagttagagtcacaccaaggttttttttatat
tatatctgactattgttatggtgtgtttcctaaatttctttttcagcatg
tcatctttgtgtataagagggccacagaattgttgagtaattttatatca
ggcactttggtgaggtattcaaggtttaggagttttcctggtgcaatttc
gtatcactaggttagggttcttacatcttacttaagggatattttggaac
actctacctgtaccaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_116239809_116240937
seq2: B6Ng01-303P23.b_49_1166 (reverse)

seq1  ATAGAAAAATTCTAGAGAAGCTTAACAAGGAAATGAAAGTGTGGATTATA  50
      ||||||||| |||||||||   |||||  ||| |||||||||||||||||
seq2  ATAGAAAAA-TCTAGAGAAAGCTAACA--GAATTGAAAGTGTGGATTATA  47

seq1  TTATA-CCATAGATGGAAGTAACAACTTTAGAAAATTCTACATATGTATG  99
      ||||| |||||||||  ||| |||   |||||||||||||||||||||||
seq2  TTATACCCATAGATG--AGT-ACA--CTTAGAAAATTCTACATATGTATG  92

seq1  GTGGCTTGAATATGCTTGGTCCAGGGAGTGGCACTATAAGGAGATGTGAC  149
      ||||||   |||||||||||||||||||||||||||| ||||||||||||
seq2  GTGGCT--GATATGCTTGGTCCAGGGAGTGGCACTAT-AGGAGATGTGAC  139

seq1  CTATTTGGATTAGGTGAGTCCTGATTGGAAGAAATTTGTTACTTTTGAGG  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTATTTGGATTA-GTGAGTCCTGATTGGAAGAAATTTGTTACTTTTGAGG  188

seq1  TAGGCTTGAAGATGTTTCTCATAGCTGCCTGGAAGCCAGTCTCGT-CCTG  248
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  TAGGCTTGAAGATG-TTCTCATAGCTGCCTGGAAGCCAGTCTCGTCCCTG  237

seq1  TTTGTCTTCAGAGCAAGATGTAGAACTCTCAGCTCCTCCAGTGCCATGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTCAGAGCAAGATGTAGAACTCTCAGCTCCTCCAGTGCCATGCT  287

seq1  TGCCTAGATGCTCTCATGCTTCTCAGCCTCATGATAATAGACTGAACCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGATGCTCTCATGCTTCTCAGCCTCATGATAATAGACTGAACCTC  337

seq1  AAAACCTGTAAGCCACCCCTGATTAAATATTTGGCTTTATAAAAGGTGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGTAAGCCACCCCTGATTAAATATTTGGCTTTATAAAAGGTGTC  387

seq1  TTGGTCATGGTGTCTCATCACAGCAATGGAAAACCTAAGACAACATGTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATGGTGTCTCATCACAGCAATGGAAAACCTAAGACAACATGTTA  437

seq1  ATGAGAAAATCATTTGGAATGATGATTCTGTAAGGTAAAAAGACTAGCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAATCATTTGGAATGATGATTCTGTAAGGTAAAAAGACTAGCTG  487

seq1  TGCTTTCAGAGGACCAGCATTCAGTTTAAGAAAATCTGATACACTCTTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAGAGGACCAGCATTCAGTTTAAGAAAATCTGATACACTCTTCT  537

seq1  GGGCTACATAATTATCATATATGCACATGTTGCACAGATACATAGTTAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACATAATTATCATATATGCACATGTTGCACAGATACATAGTTAGG  587

seq1  CAAAATAGCAATATACATAAAATTAAATTAAAAAACAAACTTGAAACTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGCAATATACATAAAATTAAATTAAAAAACAAACTTGAAACTTA  637

seq1  AGACTATGGAAAATGGAATTTCAAACTAAATTTATTTTGAGAAAAGAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATGGAAAATGGAATTTCAAACTAAATTTATTTTGAGAAAAGAAAA  687

seq1  ACACAATCAAAATTCAATTAAGTATTACCCAAAGAGAATATACAAAGGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATCAAAATTCAATTAAGTATTACCCAAAGAGAATATACAAAGGTT  737

seq1  TGAGAATAAAACATTTTCAAATGCTTCTTAATCTAAAACTCAAAAGCCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATAAAACATTTTCAAATGCTTCTTAATCTAAAACTCAAAAGCCAA  787

seq1  AAAACATAAATAGACAAATGTAGATGACTAATAATAATAACTGATGAGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAAATAGACAAATGTAGATGACTAATAATAATAACTGATGAGTA  837

seq1  ATATCAGGAATCCAAATGGAAAACTACCCATGACTTTAATGGGAGACTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGGAATCCAAATGGAAAACTACCCATGACTTTAATGGGAGACTAT  887

seq1  TGTTTAATCTTATAAAGAAATGGTGCAATAATAATAGTGAATCAAATAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATCTTATAAAGAAATGGTGCAATAATAATAGTGAATCAAATAAA  937

seq1  TTTGAAAACATAAACATACGTATATAAATGTATTATTAACAAAAGGCTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACATAAACATACGTATATAAATGTATTATTAACAAAAGGCTCA  987

seq1  AAATCTTTTTCCACAAAATATACAGGAAGAGATTATCTCAGTGATAAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTTCCACAAAATATACAGGAAGAGATTATCTCAGTGATAAATA  1037

seq1  TGAATCACACTTTTAAGAAAGGGTGCAAAAGTTAATAACATTTCTTCACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCACACTTTTAAGAAAGGGTGCAAAAGTTAATAACATTTCTTCACA  1087

seq1  AAACCTCTGTACATCCAGGTAAAATGAATTC  1129
      |||||||||||||||||||||||||||||||
seq2  AAACCTCTGTACATCCAGGTAAAATGAATTC  1118


| Home | SequenceCutter | Blast | Download |