BAC Information

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BAC

Clone NameB6Ng01-304P05
Chromosome5 (Build37)X (Build37)
Map Location 86,297,258 - 86,297,37610,411,653 - 10,412,758
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304P05.bB6Ng01-304P05.g
ACCGA098366GA098367
length8141,110
definitionB6Ng01-304P05.b B6Ng01-304P05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,297,258 - 86,297,376)(10,411,653 - 10,412,758)
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaatcctgagat
tccatctcacaccagtcagaattgataaggtcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggtttctta
gaaaattggacatagtagtaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgttccaactggtgagaaagacacatgctacactat
attcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggttgttcctggagggcatcattctgagtgaagtaacctaatcacaa
aagaagtcacatgatatattctcactgataattggattttagcccagaaa
cttagaatatccaagatatcagatacaatttgcaaaacacatgaaactca
agaagaatgaagaccaaagtgtggaccctttgccccttctttttttttta
attaacattttttattacatattttcctcaattccatttccaatgctatc
ccaaaagtcccccatattctcccacccacttccctacccactcattccta
tttttttttttttt
gaattccacgaagagagaacctggccttcatttttacaaagttgtgctga
tgccatgtattgttggccctctgtagactcgcttgaacctttatttttaa
actagagatcatggtgtatttggcaggtcactgctggtatgactggactt
gacaaatgaggctggtgaagctcagaggtagcagccaccagtcagcggtg
tgtcagaacaactttggcagtcttgttctgtgagatttaagaatgagttt
atgtggcaacttgctatttattctcagaagcagggacagaggagaactat
gggaaggctagactttttactgtcacagctttcatggtcacatcatctcc
tcccccaaagtcagaaactgccagtaagtgaagttcagtggtagcaataa
aagtgaatacagatgtattttgaagcttgtagttctgagttttggggttg
acttccgtttcaaattttatacttgaatccgtatatacattttttttcta
aaatcttttctgaaaaatagtgattcaacagtacgaatgttgctagggtg
ccagatttaggtggccctctgtatgtacaacaccgaaactcctttatcag
cttatggtgtcttttctctgtcataaaatggtaatactaatatctcatgg
atttactgtaaggcttaaattagttcctacaaatgtgttctggatgggcc
aagtgcaatacaatcagcatggtgagtgctacctagtattgtgtttttct
gattgaaattgctttttcctgtctttgagtagtgtgcacacactgggcag
tacccaagtgtttggggaaaggccttatctgcaattatcattcttccctt
tgatcaaccttgaaggtccttaggtagtagattagtaatttaacagccaa
gattcttgctaaacttttatttaatgtaccaaaagtctcccagtttcaat
agtattgggatgggtttttgtccctactcatactcccgcccctccaggag
gcagtctcttcagaggtttcaggaagttttgactgaggtctatgaagcac
ttttctgacctagcagtcattccctgggggttcttcaatgcctgctcagt
ctaggtgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86297258_86297376
seq2: B6Ng01-304P05.b_738_853 (reverse)

seq1  AAAAAAATGGGAATGAGTGGGTAGGGAAGTCGGGGGGAGGGTATGGGGGA  50
      |||||||| ||||||||||||||||||||| || |||||  |||||||||
seq2  AAAAAAATAGGAATGAGTGGGTAGGGAAGTGGGTGGGAGAATATGGGGGA  50

seq1  CTTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATATGTAATAAAAAA  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTTTGGGATAGCATTGGAAATGGAATTGAGGAAAATATGTAATAAAAAA  100

seq1  TAAATAAAAATAAAAAAAA  119
      |      || |||||||||
seq2  T---GTTAATTAAAAAAAA  116

seq1: chrX_10411653_10412758
seq2: B6Ng01-304P05.g_68_1177

seq1  GAATTCCACGAAGAGAGAACCTGGCCTTCATTTTTACAAAGTTGTGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGAAGAGAGAACCTGGCCTTCATTTTTACAAAGTTGTGCTGA  50

seq1  TGCCATGTATTGTTGGCCCTCTGTAGACTCGCTTGAACCTTTATTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGTATTGTTGGCCCTCTGTAGACTCGCTTGAACCTTTATTTTTAA  100

seq1  ACTAGAGATCATGGTGTATTTGGCAGGTCACTGCTGGTATGACTGGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGATCATGGTGTATTTGGCAGGTCACTGCTGGTATGACTGGACTT  150

seq1  GACAAATGAGGCTGGTGAAGCTCAGAGGTAGCAGCCACCAGTCAGCGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGAGGCTGGTGAAGCTCAGAGGTAGCAGCCACCAGTCAGCGGTG  200

seq1  TGTCAGAACAACTTTGGCAGTCTTGTTCTGTGAGATTTAAGAATGAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAACAACTTTGGCAGTCTTGTTCTGTGAGATTTAAGAATGAGTTT  250

seq1  ATGTGGCAACTTGCTATTTATTCTCAGAAGCAGGGACAGAGGAGAACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCAACTTGCTATTTATTCTCAGAAGCAGGGACAGAGGAGAACTAT  300

seq1  GGGAAGGCTAGACTTTTTACTGTCACAGCTTTCATGGTCACATCATCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCTAGACTTTTTACTGTCACAGCTTTCATGGTCACATCATCTCC  350

seq1  TCCCCCAAAGTCAGAAACTGCCAGTAAGTGAAGTTCAGTGGTAGCAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAAAGTCAGAAACTGCCAGTAAGTGAAGTTCAGTGGTAGCAATAA  400

seq1  AAGTGAATACAGATGTATTTTGAAGCTTGTAGTTCTGAGTTTTGGGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATACAGATGTATTTTGAAGCTTGTAGTTCTGAGTTTTGGGGTTG  450

seq1  ACTTCCGTTTCAAATTTTATACTTGAATCCGTATATACATTTTTTTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCGTTTCAAATTTTATACTTGAATCCGTATATACATTTTTTTTCTA  500

seq1  AAATCTTTTCTGAAAAATAGTGATTCAACAGTACGAATGTTGCTAGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTCTGAAAAATAGTGATTCAACAGTACGAATGTTGCTAGGGTG  550

seq1  CCAGATTTAGGTGGCCCTCTGTATGTACAACACCGAAACTCCTTTATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTAGGTGGCCCTCTGTATGTACAACACCGAAACTCCTTTATCAG  600

seq1  CTTATGGTGTCTTTTCTCTGTCATAAAATGGTAATACTAATATCTCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGTGTCTTTTCTCTGTCATAAAATGGTAATACTAATATCTCATGG  650

seq1  ATTTACTGTAAGGCTTAAATTAGTTCCTACAAATGTGTTCTGGATGGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGTAAGGCTTAAATTAGTTCCTACAAATGTGTTCTGGATGGGCC  700

seq1  AAGTGCAATACAATCAGCATGGTGAGTGCTACCTAGTATTGTGTTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAATACAATCAGCATGGTGAGTGCTACCTAGTATTGTGTTTTTCT  750

seq1  GATTGAAATTGCTTTTTCCTGTCTTTGAGTAGTGTGCACACACTGGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAATTGCTTTTTCCTGTCTTTGAGTAGTGTGCACACACTGGGCAG  800

seq1  TACCCAAGTGTTT-GGGAAAGGCCTTATCTGCAATTATCATTCTT-CCTT  848
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  TACCCAAGTGTTTGGGGAAAGGCCTTATCTGCAATTATCATTCTTCCCTT  850

seq1  TGATCAACCTTGAAGGTCCTTAGGTAGTAGATTAGTAA-TTAACAGCCAA  897
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGATCAACCTTGAAGGTCCTTAGGTAGTAGATTAGTAATTTAACAGCCAA  900

seq1  GATTCTTGCTAAAC-TTTATTTAATGTACCAAAAAGTCTCCCAGTTTCAA  946
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  GATTCTTGCTAAACTTTTATTTAATGTACC-AAAAGTCTCCCAGTTTCAA  949

seq1  TAGTATT-GGAT-GGTTTTTGTCCCTACTCATACTCCCG-CCCTCCAAGA  993
      ||||||| |||| |||||||||||||||||||||||||| ||||||| ||
seq2  TAGTATTGGGATGGGTTTTTGTCCCTACTCATACTCCCGCCCCTCCAGGA  999

seq1  GGCAGTCTCTTCAAGAGG-TTCAGGAAGTTTTGACTGA-GTCTATGAAAG  1041
      |||||||||||| ||||| ||||||||||||||||||| ||||||| |||
seq2  GGCAGTCTCTTC-AGAGGTTTCAGGAAGTTTTGACTGAGGTCTATG-AAG  1047

seq1  CACCTTTCTGACCCTAGCAGTCCATTCCT-GGGGTTCTCCATTCCCTGCT  1090
      ||| ||||||| ||||||||||  | ||| |||||||| || | ||||||
seq2  CACTTTTCTGA-CCTAGCAGTCATTCCCTGGGGGTTCTTCAATGCCTGCT  1096

seq1  CCAGTCTTTAGTGCTG  1106
       ||||| |  ||||||
seq2  -CAGTC-TAGGTGCTG  1110