BAC Information

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BAC

Clone NameB6Ng01-306L05
ChromosomeX (Build37)
Map Location 3,123,784 - 3,124,915
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC385516, LOC434721
Downstream geneLOC668957, LOC100043932, OTTMUSG00000016406, LOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961, LOC100042159, LOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306L05.bB6Ng01-306L05.g
ACCGA099662GA099663
length1,1311,135
definitionB6Ng01-306L05.b B6Ng01-306L05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactcatagacttagatctttgggtacagaattagcattacaata
catagaccaaacctcaatctatacaaagaactacaggcaactaaagaatg
ctgaaagggggtgaaattctttccctgtgaaaaagatacaactgattttc
ctaaaaaacttgcatacaagtaacattatacatactgagcaggttgtatt
aggaatttgtatgtatatgcatatacatgtatgcataaatatatgtatgt
aatgataattaaggtaaaaagaggcaatgggtgagaaatagtgcaaagag
agtatatagaaagacttgaaggagaaaaggaaggggaaatggtataaatg
cacaacaatctcaaaatataaaagaaataatatttacaaaaaccaagtcc
tgaacagtgtaaataatagatgacatatcaaaaaataggtggtgaatcac
atggggactgaccccagatgaaaagtttcaaataatcaaatgttgagaga
ggaagaaccatctttccacaaggatgaatccttgaatggttggttatata
acaccaaatggtcagtcttagaaatatacacttgtccccatttaaggacc
tcatttgtctccattttgaggaccaggcctggtgtcaaaaaaggccataa
agcaccagcttaaagaatagaccatagtaagtcccagaagcttaggtcag
aagacaccagctgtaggaacagaccataaaatccagaacaagatcatcaa
accctctaatgcactgggctgtcctagttcatcaagtgattgaatgatca
tgacataggtatgtagaacactcattacctataaccgtgcctcttcctcc
cagcaaccactaatgaaattttagattacctaaattcttctagagagttc
ccaagttccctgtaagaggcctgcatgcctttatgtgggggttgccattt
caaagaattgttaacccccaaatgctggttatttctaacagaataaaagc
tctttgtttttgcatactatctgagccctggggtctacctttcagtattt
tgaccttatagtattaagatgcttttcctcggtttatggatgtgtgatgt
ggagagagttgtaatgcttgtgcattaccat
gaattctttcttatttctaccctgaccaagtatcattcagcagaaagttt
tttagttttcaggagcatgtggactttctgttgttttggttgttattgac
atctagccttattctgatgttatctgatagaatgcatgtgagtattccca
ttttcttgtatcagttgatgcttgttttataaccaattatattatcagtt
ttggagaatgttccatgaggagctgagaataatgtatattctcttgtttt
ggggtgaaatgttctatagatatcttttaaatccatttggttcataactt
ctgttcatttcaccgtgtctgttactttctatttcaatgacctgtccatt
ggtgagagtggagtgttgaagtcccccactataattatgagaagttcaat
gtgtgttttgagctttagtaaaatttcttttatggatgtgtgtcttagtc
agggtttctattcctgcacaaacatcatgaccaagaagcaagttagggag
gaaaaggtttattcagcttacacttccatactgctgttcatcatcgagga
agtcagtactggaattcaagcaggtcagaaagcaggagctgatgcagagg
caatggagggatgttgcttactggcttgcttcccctggcttggtcagcct
gctctcttatagaaggaagcctagcagcccagagatggcaccacccacaa
ggggacctcctcccttgatcactaattgagaaaatgccttacagctggat
ctcctggaggcatttcccctactgaaactcctttctctctgagaactaca
gcctgtgtcaagttgacacaaaactagccattacaaagtgggtgccatga
aatttgggcatagatgttcagaattgagactttgttttggtggatttttc
ctttgatgagtatgaattcttcctcatcttttttttttaaactatttgtg
gtggaatattatttttatggatataagatggcctccaggaaggaggaatt
atctttgctgttcttccactctacttgcagctggcattccaccactctgc
tttaagccttttgtgcttccaggattgccataatgcttgagtccattacc
tggactgagcctggtgggaaggactgtacctttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_3123784_3124915
seq2: B6Ng01-306L05.b_52_1182

seq1  GAATTCACTCATAGACTTAGATCTTTGGGTACAGAATTAGCATTACAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCATAGACTTAGATCTTTGGGTACAGAATTAGCATTACAATA  50

seq1  CATAGACCAAACCTCAATCTATACAAAGAACTACAGGCAACTAAAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACCAAACCTCAATCTATACAAAGAACTACAGGCAACTAAAGAATG  100

seq1  CTGAAAGGGGGTGAAATTCTTTCCCTGTGAAAAAGATACAACTGATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGGGGTGAAATTCTTTCCCTGTGAAAAAGATACAACTGATTTTC  150

seq1  CTAAAAAACTTGCATACAAGTAACATTATACATACTGAGCAGGTTGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAACTTGCATACAAGTAACATTATACATACTGAGCAGGTTGTATT  200

seq1  AGGAATTTGTATGTATATGCATATACATGTATGCATAAATATATGTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTGTATGTATATGCATATACATGTATGCATAAATATATGTATGT  250

seq1  AATGATAATTAAGGTAAAAAGAGGCAATGGGTGAGAAATAGTGCAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAATTAAGGTAAAAAGAGGCAATGGGTGAGAAATAGTGCAAAGAG  300

seq1  AGTATATAGAAAGACTTGAAGGAGAAAAGGAAGGGGAAATGGTATAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTATATAGAAAGACTTGAAGGAGAAAAGGAAGGGGAAATGGTATAAATG  350

seq1  CACAACAATCTCAAAATATAAAAGAAATAATATTTACAAAAATCAAGTCC  400
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACAACAATCTCAAAATATAAAAGAAATAATATTTACAAAAACCAAGTCC  400

seq1  TGAACAGTGTAAATAATAGATGACATATCAAAAAATAGGTGGTGAATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTGTAAATAATAGATGACATATCAAAAAATAGGTGGTGAATCAC  450

seq1  ATGGGGACTGACCCCAGATGAAGGGTTTCAAAGAATCAAATGTTGAGAGA  500
      ||||||||||||||||||||||  |||||||| |||||||||||||||||
seq2  ATGGGGACTGACCCCAGATGAAAAGTTTCAAATAATCAAATGTTGAGAGA  500

seq1  GGAAGAACCATCTTTCCACAAGGATGAACCCTTGAATGGTTGGTTATATA  550
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGAAGAACCATCTTTCCACAAGGATGAATCCTTGAATGGTTGGTTATATA  550

seq1  ACACCAAATGGTCAGTCTTAGAAATATACACTTGTCCCCATTTAAGGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAATGGTCAGTCTTAGAAATATACACTTGTCCCCATTTAAGGACC  600

seq1  TCATTTGTCTCCATTTTGAGGACCAGGCCTGGTGTCAAAAAAGGCCATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTCTCCATTTTGAGGACCAGGCCTGGTGTCAAAAAAGGCCATAA  650

seq1  AGCACCAGCTTCAAGAATAGACCATAGTAAGTCCCAGAAGCTTAGGTCAG  700
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGCTTAAAGAATAGACCATAGTAAGTCCCAGAAGCTTAGGTCAG  700

seq1  AAGACACCAGCTGTAGGAACAGACCATAAAATCCAGAACAAGATCATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACCAGCTGTAGGAACAGACCATAAAATCCAGAACAAGATCATCAA  750

seq1  ACCCTCTCATGCACTGGGCTGTCCTAGTTCATCAAGTGATTGAATGATCA  800
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTAATGCACTGGGCTGTCCTAGTTCATCAAGTGATTGAATGATCA  800

seq1  TGACATAGGTATGTAGAACACTCATTACCTATAACCGTGCC----CCCCC  846
      |||||||||||||||||||||||||||||||||||||||||    || ||
seq2  TGACATAGGTATGTAGAACACTCATTACCTATAACCGTGCCTCTTCCTCC  850

seq1  CAGCAACCACTAATGAAATTTTAGATTACCT-AATTCTTCTAGAGAGTTC  895
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGCAACCACTAATGAAATTTTAGATTACCTAAATTCTTCTAGAGAGTTC  900

seq1  CCAAGTTCCCTGTAAGAAGGCCTGCATGCCTTTATGTGGGGGTTGCCATT  945
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAAGTTCCCTGTAAG-AGGCCTGCATGCCTTTATGTGGGGGTTGCCATT  949

seq1  TCAAAGAATTGTTAACCCCCAAATGCTGGTTATTTCT-ACAGAATAAAAG  994
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAAAGAATTGTTAACCCCCAAATGCTGGTTATTTCTAACAGAATAAAAG  999

seq1  CTCTTTGTTTTTGCATACTATCTGAG-CCTGGGGTCTACC-TTCAGTAAT  1042
      |||||||||||||||||||||||||| ||||||||||||| |||||||  
seq2  CTCTTTGTTTTTGCATACTATCTGAGCCCTGGGGTCTACCTTTCAGTA--  1047

seq1  TTTTGGACCCTTATAGTATTAAGATGCTTTTCCTCGTTTTTATTTGTATG  1092
      |||||   |||||||||||||||||||||||||||| ||   | || |||
seq2  TTTTG--ACCTTATAGTATTAAGATGCTTTTCCTCGGTT---TATGGATG  1092

seq1  TGTGGATGTGAGAGA-AGTGGGAATGCTTGTGCCTTACCAT  1132
      ||| |||||| |||| ||| | ||||||||||| |||||||
seq2  TGT-GATGTG-GAGAGAGTTGTAATGCTTGTGCATTACCAT  1131