BAC Information

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BAC

Clone NameB6Ng01-307J15
ChromosomeX (Build37)
Map Location 143,083,475 - 143,161,418
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623697, LOC623731, LOC237096, LOC100039558, EG666730
Downstream geneEG245663, Htr2c, Il13ra2, V1rb10, Lrch2, LOC100039462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307J15.bB6Ng01-307J15.g
ACCGA100331GA100332
length6151,075
definitionB6Ng01-307J15.b B6Ng01-307J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,160,804 - 143,161,418)(143,083,475 - 143,084,518)
sequence
gaattcaggaatcaaacacagatcataagacttgcatgacaatgactata
gagcatctctttgttctcaagcatttcattaaagttcaaagaagtgcaag
tcaacagagataggtaaaaaagctccgcaaaatacatgaacaaaaataga
aattcaacaaatagaaatcaagcattgagaacagagggaaaaattctgga
agaatggcacacaatgaatgactgagataaaaagaatcaaaagagaatct
gagaaagataaggtcaagcagaagaagaaatcaatgagcatcaagaaaag
ttgtttaaatttaccactcagagaaaccaagctaaaataagaaaacaatt
gaagccaatgacatttttaagacactagaataaaacagatgaaaggcttc
tcacaattggtctggtaaatgatttttttgaacatgaggttaaaatataa
gtcataaaagcaaagtaaaatgatgacatcaaataaaaaaattattaagg
aaaagttatttcttgggggtaaagtgattgcttatgcctgatttccagta
tagcaaataaataaaagaaaaactctgcaggaagcagtagtgggtgggtt
ggggagcagggtggg

gaattcattagctgaatgtaaggtaatagtattaatggaaggttctttaa
tgaggcatagaaaaggataacctaatgagagttgataattttcacttgga
tgtggtatgttggagtcatgacaaaattttataaaggcaaaatggaatat
aacggccttggagtcaaagctgggttggttatattattgatgtaagaatc
ctaaaggaacagatggcactgtaaaactcagcctttacttttgcttttgc
ccttcatgccaaaaataaggggtaggaggagtgattcctgggccgtcaag
cttaggctgagactgcagtattcatttgcttaaatataagtcaaagtggc
agttccagtttctcagccatcaagtagtctttatgtgatcacacagtagt
aatccatttctcacactctgtggaaaagcaatgtaacgtgaaatcccctt
cacaattcatttttaggatgacattgaccactgaggtatcaactccaaaa
tttgtttttgtgcaaactagaaaagttcccattttcttcaacagttttca
ttgctgaagtttaacttggggttatcattctagattggcctagcaacttc
atgtaagctttctgttaagtgaaggttatgaaatggtggagagaaatttc
ctaaaggatactgatctgaaatataaattcctgtaagtttctattgcaaa
tggaaatgtattacaccagggaagaaagataattgtcttttcatcaggct
cacatccttttatcactatcacaatatgagacattacaatattactaatt
tgggcactttaagtgatagagttaagctaatagaaagttttaaccacagt
cccaaaacatgtcagatatctagaagcatgtgtgaaaatttctttttgtc
accccaccatttaattatttcaaaaacactctcaacattcctaatgagtg
attattccctttgggaaaattgttggccaggaataacaggagaacttgtt
ttgggatttgtttaatgtggtttctgcttttatataagcgacttattttt
tcaattaacgttatgccttaatcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_143160804_143161418
seq2: B6Ng01-307J15.b_45_659 (reverse)

seq1  CCCACCCTGCTCCCCAACCCACCCACTACTGCTTCCTGCAGAGTTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTGCTCCCCAACCCACCCACTACTGCTTCCTGCAGAGTTTTTCT  50

seq1  TTTATTTATTTGCTATACTGGAAATCAGGCATAAGCAATCACTTTACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTGCTATACTGGAAATCAGGCATAAGCAATCACTTTACCCC  100

seq1  CAAGAAATAACTTTTCCTTAATAATTTTTTTATTTGATGTCATCATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATAACTTTTCCTTAATAATTTTTTTATTTGATGTCATCATTTTA  150

seq1  CTTTGCTTTTATGACTTATATTTTAACCTCATGTTCAAAAAAATCATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTTTATGACTTATATTTTAACCTCATGTTCAAAAAAATCATTTA  200

seq1  CCAGACCAATTGTGAGAAGCCTTTCATCTGTTTTATTCTAGTGTCTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCAATTGTGAGAAGCCTTTCATCTGTTTTATTCTAGTGTCTTAAA  250

seq1  AATGTCATTGGCTTCAATTGTTTTCTTATTTTAGCTTGGTTTCTCTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATTGGCTTCAATTGTTTTCTTATTTTAGCTTGGTTTCTCTGAGT  300

seq1  GGTAAATTTAAACAACTTTTCTTGATGCTCATTGATTTCTTCTTCTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATTTAAACAACTTTTCTTGATGCTCATTGATTTCTTCTTCTGCTT  350

seq1  GACCTTATCTTTCTCAGATTCTCTTTTGATTCTTTTTATCTCAGTCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTATCTTTCTCAGATTCTCTTTTGATTCTTTTTATCTCAGTCATTC  400

seq1  ATTGTGTGCCATTCTTCCAGAATTTTTCCCTCTGTTCTCAATGCTTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGCCATTCTTCCAGAATTTTTCCCTCTGTTCTCAATGCTTGATT  450

seq1  TCTATTTGTTGAATTTCTATTTTTGTTCATGTATTTTGCGGAGCTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGTTGAATTTCTATTTTTGTTCATGTATTTTGCGGAGCTTTTTT  500

seq1  ACCTATCTCTGTTGACTTGCACTTCTTTGAACTTTAATGAAATGCTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCTCTGTTGACTTGCACTTCTTTGAACTTTAATGAAATGCTTGAG  550

seq1  AACAAAGAGATGCTCTATAGTCATTGTCATGCAAGTCTTATGATCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAGATGCTCTATAGTCATTGTCATGCAAGTCTTATGATCTGTGT  600

seq1  TTGATTCCTGAATTC  615
      |||||||||||||||
seq2  TTGATTCCTGAATTC  615


seq1: chrX_143083475_143084518
seq2: B6Ng01-307J15.g_67_1141

seq1  GAATTCATTAGCTGAATGTAAGGTAATAGTATTAATGGAAGGTTCTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGCTGAATGTAAGGTAATAGTATTAATGGAAGGTTCTTTAA  50

seq1  TGAGGCATAGAAAAGGATAACCTAATGAGAGTTGATAATTTTCACTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATAGAAAAGGATAACCTAATGAGAGTTGATAATTTTCACTTGGA  100

seq1  TGTGGTATGTTGGAGTCATGACAAAATTTTATAAAGGCAAAATGGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATGTTGGAGTCATGACAAAATTTTATAAAGGCAAAATGGAATAT  150

seq1  AACGGCCTTGGAGTCAAAGCTGGGTTGGTTATATTATTGATGTAAGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCCTTGGAGTCAAAGCTGGGTTGGTTATATTATTGATGTAAGAATC  200

seq1  CTAAAGGAACAGATGGCACTGTAAAACTCAGCCTTTACTTTTGCTTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAACAGATGGCACTGTAAAACTCAGCCTTTACTTTTGCTTTTGC  250

seq1  CCTTCATGCCAAAAATAAGGGGTAGGAGGAGTGATTCCTGGGCCGTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGCCAAAAATAAGGGGTAGGAGGAGTGATTCCTGGGCCGTCAAG  300

seq1  CTTAGGCTGAGACTGCAGTATTCATTTGCTTAAATATAAGTCAAAGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCTGAGACTGCAGTATTCATTTGCTTAAATATAAGTCAAAGTGGC  350

seq1  AGTTCCAGTTTCTCAGCCATCAAGTAGTCTTTATGTGATCACACAGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGTTTCTCAGCCATCAAGTAGTCTTTATGTGATCACACAGTAGT  400

seq1  AATCCATTTCTCACACTCTGTGGAAAAGCAATGTAACGTGAAATCCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTTCTCACACTCTGTGGAAAAGCAATGTAACGTGAAATCCCCTT  450

seq1  CACAATTCATTTTTAGGATGACATTGACCACTGAGGTATCAACTCCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTCATTTTTAGGATGACATTGACCACTGAGGTATCAACTCCAAAA  500

seq1  TTTGTTTTTGTGCAAACTAGAAAAGTTCCCATTTTCTTCAACAGTTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTGCAAACTAGAAAAGTTCCCATTTTCTTCAACAGTTTTCA  550

seq1  TTGCTGAAGTTTAACTTGGGGTTATCATTCTAGATTGGCCTAGCAACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAGTTTAACTTGGGGTTATCATTCTAGATTGGCCTAGCAACTTC  600

seq1  ATGTAAGCTTTCTGTTAAGTGAAGGTTATGAAATGGTGGAGAGAAATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGCTTTCTGTTAAGTGAAGGTTATGAAATGGTGGAGAGAAATTTC  650

seq1  CTAAAGGATACTGATCTGAAATATAAATTCCTGTAAGTTTCTATTGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGATACTGATCTGAAATATAAATTCCTGTAAGTTTCTATTGCAAA  700

seq1  TGGAAATGTATTACACCAGGGAAGAAAGATAATTGTCTTTTCATCAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTATTACACCAGGGAAGAAAGATAATTGTCTTTTCATCAGGCT  750

seq1  CACATCCTTTTATCACTATCACAATATGAGACATTACAATATTACTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTTTTATCACTATCACAATATGAGACATTACAATATTACTAATT  800

seq1  T-GGCACTTTAAGTGATAGAGTTAAGCTAATAGAAAGTTT--AACACAGT  847
      | ||||||||||||||||||||||||||||||||||||||  | ||||||
seq2  TGGGCACTTTAAGTGATAGAGTTAAGCTAATAGAAAGTTTTAACCACAGT  850

seq1  CCCAAAACATGTCAGATATCTAGAAGCATGTGTGAAAATT--CTTTTGTC  895
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  CCCAAAACATGTCAGATATCTAGAAGCATGTGTGAAAATTTCTTTTTGTC  900

seq1  A-CCCACCA-TTAATTATT--CAAAACACTCTCAACA-TCCTAATGAGTG  940
      | ||||||| |||||||||   ||||||||||||||| ||||||||||||
seq2  ACCCCACCATTTAATTATTTCAAAAACACTCTCAACATTCCTAATGAGTG  950

seq1  A-TATTCC--TTGG--AAAATGTTGG-CAGG-ATAACA-GAGAAC-TGTT  981
      | ||||||  ||||  ||| |||||| |||| |||||| |||||| ||||
seq2  ATTATTCCCTTTGGGAAAATTGTTGGCCAGGAATAACAGGAGAACTTGTT  1000

seq1  T--GGATTTGTTTAATGT-GTTTCTGC-TTTATAT-AGC-AC---TATTT  1022
      |  ||||||||||||||| |||||||| ||||||| ||| ||   | |||
seq2  TTGGGATTTGTTTAATGTGGTTTCTGCTTTTATATAAGCGACTTATTTTT  1050

seq1  TCAATTA--CATATG-CTTAATCAC  1044
      |||||||    |||| |||||||||
seq2  TCAATTAACGTTATGCCTTAATCAC  1075


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