BAC Information

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BAC

Clone NameB6Ng01-307K02
ChromosomeX (Build37)
Map Location 117,629,826 - 117,744,656
singlet/doubletdoublet
Overlap genePcdh11x
Upstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307K02.bB6Ng01-307K02.g
ACCGA100351GA100352
length1,1481,098
definitionB6Ng01-307K02.b B6Ng01-307K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,743,515 - 117,744,656)(117,629,826 - 117,630,919)
sequence
gaattcccttattgctcctcagcagctgcattaatttatgttgcttccaa
tactgtatgagatttttctgttctctactataatttatttttaaataatt
acctttaatattttttctgaccaaatattttaatattatgcactaatatt
gaaattggctatacattatgtgttgtgactgctttttgatattgactgaa
tgattatatgatactaagatactcatattttcactagtttgaaatgtaac
ctattttatcataggtatttttgcagttttgaaatatttaaataataaat
tcatgttgaatgatatttctaaaatgactattgcattattttctattatg
gaggaagaactctaaaagccacacaagttaatgatgaactattagctatg
agtagctgatgggagagggagaatcattctgttttgagagcatttgcatg
ctgcagtagatggcactgctaccatgcatgtgagagtcagtactaattac
acttaggaagttaacaaaaacaagtaagtaaataattaattaaagacctg
aacttaataggaggcaggttggtaacttatagatctcaaaggggaagaaa
atggaatagatatgatcatgttaattgtatgcattataaaattctcaata
aaggcaaagtactagctactaaaatctaaagtaatatatgtcatagtaaa
aactgttttagagagtgaaattagaaggggtaggagattatgttaagcat
tgccagcagttaattgggaaaggatgggtgtaagaaatctggactaaata
aatctgacttgatttttcatggttattccatatcaaaagttggaactttt
taataaaattctagagtagagtaaaattaaagagcattgtaaagataagt
aagtcccatctaaagaagtttaaatgagaacaaaatatgttaaacatgac
ctatgagcaaatcactatagacgatacaaattctcagcttcttaccatgg
ggtgatttaataagtacatttacactttagtcatacataaatccttttgg
acttatgtttaaacctccagtcttgtcttggaaatgttttctacctatga
tattaccaaaaataagtggacaggcacatctgccttcagaaaatagtt

gaattcattcaatcagtcagatgagtttagggcagtacagtggtgttgag
ttctttaatgagttcctgcagagtcagttgaagccaaaccataagaagga
gccaaaagactagaacaaatttccagaattaatatgagaccaagaaaagc
aaatcagtgagaaactgagtgaagccactttgatgcaccttggagaagag
tttgggataaaacagctcagttgaataaaccagttagttcaaaatgagct
agaaaaggtgagtttattcactagcaagcctttgagactccaattttatc
tggcaaataaaagttacttttacaatatgaaacttctcagaactgttgta
atgtccatacaactctatagttatggttaaaggtctagaaaagtctgtca
ctgtaggttgataatgtttacactgtactgctggaaaagtaaaatgccag
aaataattcactgttgtgtggaaatatgtcattgtatgcagtaatccata
tatatatatatatatatatatatatatataattttagaatttcaataagt
acttatattgtgtttcatgaacttcctactgcaacagtatttgatcttag
tctattggttaagacaattgtatataaaagttgaaagtcttaactaaaaa
tctgattgtgtaccaattttaaaacactagagaatagccttcaaacatga
attgaagccattataatcatctaacttcaagaaattcaagatgttgaaaa
taaagctcgataatctctgtacattgttagactttaaaaggaaatgacat
aaatttttgtatcgataatacataagcatataaaccttaatgagaaaatg
tgtacattttttgcacactttccctcaacaacactacttcttggacatac
attaacaaagatcattcaatcttttaaagattgtctaggtatactattta
tattagatattaaaccattagtataaaatttcagaggtctccttcaatct
agattacaattgtttttattctatttagaaatttttacaggtatgccccg
gacaggagcagaagttggtgagtaagggaagcaggcctgtagggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_117743515_117744656
seq2: B6Ng01-307K02.b_42_1189 (reverse)

seq1  AACTATTTTCAGAAAGCAGATGTGCCTGTCACATTATTTTTGTAATTATC  50
      |||||||||| ||| |||||||||||||||   |||||||||  | ||||
seq2  AACTATTTTCTGAAGGCAGATGTGCCTGTCCACTTATTTTTGGTAATATC  50

seq1  ATAGTATGAAAACATTT-CAAGACAAGACTGGAGTTTTAAAACATAAGT-  98
      ||||   |||||||||| |||||||||||||||| ||| |||||||||| 
seq2  ATAGGTAGAAAACATTTCCAAGACAAGACTGGAGGTTT-AAACATAAGTC  99

seq1  CAAAAGGA-TTATGTATGACTAAGTTGTAATTGTACT--ATAAATCA-CC  144
      |||||||| ||||||||||||||  ||||| ||||||   ||||||| ||
seq2  CAAAAGGATTTATGTATGACTAAAGTGTAAATGTACTTATTAAATCACCC  149

seq1  CATGGTAAGAAGCTGAGAATTTGTTATCGTCTATAGTGATTTGCTCATAG  194
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATGGTAAGAAGCTGAGAATTTG-TATCGTCTATAGTGATTTGCTCATAG  198

seq1  GTCATGTTTAACATATTTTGTTCTCATTT-AACTTCTTTAGATGGGACTT  243
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCATGTTTAACATATTTTGTTCTCATTTAAACTTCTTTAGATGGGACTT  248

seq1  ACTTATCTTTACAATGCTCTTTAATTTTACTCTACTCTAGAATTTTATTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCTTTACAATGCTCTTTAATTTTACTCTACTCTAGAATTTTATTA  298

seq1  AAAAGTTCCAAC-TTTGATATGGAATAACCATGAAAAATCAAGTCAGATT  342
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCCAACTTTTGATATGGAATAACCATGAAAAATCAAGTCAGATT  348

seq1  TATTTAGTCCAGATTTCTTACACCCATCCTTTCCCAATTAACTGCTGGCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTCCAGATTTCTTACACCCATCCTTTCCCAATTAACTGCTGGCA  398

seq1  ATGCTTAACATAATCTCCTACCCCTTCTAATTTCACTCTCTAAAACAGTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAACATAATCTCCTACCCCTTCTAATTTCACTCTCTAAAACAGTT  448

seq1  TTTACTATGACATATATTACTTTAGATTTTAGTAGCTAGTACTTTGCCTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATGACATATATTACTTTAGATTTTAGTAGCTAGTACTTTGCCTT  498

seq1  TATTGAGAATTTTATAATGCATACAATTAACATGATCATATCTATTCCAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGAATTTTATAATGCATACAATTAACATGATCATATCTATTCCAT  548

seq1  TTTCTTCCCCTTTGAGATCTATAAGTTACCAACCTGCCTCCTATTAAGTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCCTTTGAGATCTATAAGTTACCAACCTGCCTCCTATTAAGTT  598

seq1  CAGGTCTTTAATTAATTATTTACTTACTTGTTTTTGTTAACTTCCTAAGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTTAATTAATTATTTACTTACTTGTTTTTGTTAACTTCCTAAGT  648

seq1  GTAATTAGTACTGACTCTCACATGCATGGTAGCAGTGCCATCTACTGCAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGTACTGACTCTCACATGCATGGTAGCAGTGCCATCTACTGCAG  698

seq1  CATGCAAATGCTCTCAAAACAGAATGATTCTCCCTCTCCCATCAGCTACT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAATGCTCTCAAAACAGAATGATTCTCCCTCTCCCATCAGCTACT  748

seq1  CATAGCTAATAGTTCATCATTAACTTGTGTGGCTTTTAGAGTTCTTCCTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTAATAGTTCATCATTAACTTGTGTGGCTTTTAGAGTTCTTCCTC  798

seq1  CATAATAGAAAATAATGCAATAGTCATTTTAGAAATATCATTCAACATGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGAAAATAATGCAATAGTCATTTTAGAAATATCATTCAACATGA  848

seq1  ATTTATTATTTAAATATTTCAAAACTGCAAAAATACCTATGATAAAATAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATTTAAATATTTCAAAACTGCAAAAATACCTATGATAAAATAG  898

seq1  GTTACATTTCAAACTAGTGAAAATATGAGTATCTTAGTATCATATAATCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATTTCAAACTAGTGAAAATATGAGTATCTTAGTATCATATAATCA  948

seq1  TTCAGTCAATATCAAAAAGCAGTCACAACACATAATGTATAGCCAATTTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCAATATCAAAAAGCAGTCACAACACATAATGTATAGCCAATTTC  998

seq1  AATATTAGTGCATAATATTAAAATATTTGGTCAGAAAAAATATTAAAGGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGTGCATAATATTAAAATATTTGGTCAGAAAAAATATTAAAGGT  1048

seq1  AATTATTTAAAAATAAATTATAGTAGAGAACAGAAAAATCTCATACAGTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTAAAAATAAATTATAGTAGAGAACAGAAAAATCTCATACAGTA  1098

seq1  TTGGAAGCAACATAAATTAATGCAGCTGCTGAGGAGCAATAAGGGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCAACATAAATTAATGCAGCTGCTGAGGAGCAATAAGGGAATTC  1148


seq1: chrX_117629826_117630919
seq2: B6Ng01-307K02.g_63_1160

seq1  GAATTCATTCAATCAGTCAGATGAGTTTAGGGCAGTACAGTGGTGTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAATCAGTCAGATGAGTTTAGGGCAGTACAGTGGTGTTGAG  50

seq1  TTCTTTAATGAGTTCCTGCAGAGTCAGTTGAAGCCAAACCATAAGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAATGAGTTCCTGCAGAGTCAGTTGAAGCCAAACCATAAGAAGGA  100

seq1  GCCAAAAGACTAGAACAAATTTCCAGAATTAATATGAGACCAAGAAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAGACTAGAACAAATTTCCAGAATTAATATGAGACCAAGAAAAGC  150

seq1  AAATCAGTGAGAAACTGAGTGAAGCCACTTTGATGCACCTTGGAGAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGTGAGAAACTGAGTGAAGCCACTTTGATGCACCTTGGAGAAGAG  200

seq1  TTTGGGATAAAACAGCTCAGTTGAATAAACCAGTTAGTTCAAAATGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGATAAAACAGCTCAGTTGAATAAACCAGTTAGTTCAAAATGAGCT  250

seq1  AGAAAAGGTGAGTTTATTCACTAGCAAGCCTTTGAGACTCCAATTTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGTGAGTTTATTCACTAGCAAGCCTTTGAGACTCCAATTTTATC  300

seq1  TGGCAAATAAAAGTTACTTTTACAATATGAAACTTCTCAGAACTGTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATAAAAGTTACTTTTACAATATGAAACTTCTCAGAACTGTTGTA  350

seq1  ATGTCCATACAACTCTATAGTTATGGTTAAAGGTCTAGAAAAGTCTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCATACAACTCTATAGTTATGGTTAAAGGTCTAGAAAAGTCTGTCA  400

seq1  CTGTAGGTTGATAATGTTTACACTGTACTGCTGGAAAAGTAAAATGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGTTGATAATGTTTACACTGTACTGCTGGAAAAGTAAAATGCCAG  450

seq1  AAATAATTCACTGTTGTGTGGAAATATGTCATTGTATGCAGTAATCC--A  498
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  AAATAATTCACTGTTGTGTGGAAATATGTCATTGTATGCAGTAATCCATA  500

seq1  TATATATATATATATATATATATATATATAATTTTAGAATTTCAATAAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATAATTTTAGAATTTCAATAAGT  550

seq1  ACTTATATTGTGTTTCATGAACTTCCTACTGCAACAGTATTTGATCTTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATTGTGTTTCATGAACTTCCTACTGCAACAGTATTTGATCTTAG  600

seq1  TCTATTGGTTAAGACAATTGTATATAAAAGTTGAAAGTCTTAACTAAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGGTTAAGACAATTGTATATAAAAGTTGAAAGTCTTAACTAAAAA  650

seq1  TCTGATTGTGTACCAATTTTAAAACACTAGAGAATAGCCTTCAAACATGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTGTGTACCAATTTTAAAACACTAGAGAATAGCCTTCAAACATGA  700

seq1  ATTGAAGCCATTATAATCATCTAACTTCAAGAAATTCAAGATGTTGAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGCCATTATAATCATCTAACTTCAAGAAATTCAAGATGTTGAAAA  750

seq1  TAAAGCTCGATAATCTCTGTACATTGTTAGACTTTAAAAGGAAATGACAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTCGATAATCTCTGTACATTGTTAGACTTTAAAAGGAAATGACAT  800

seq1  AAATTTTTGTATCGATAATACATAAGCATATAAACCTTAATGAGAAAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTGTATCGATAATACATAAGCATATAAACCTTAATGAGAAAATG  850

seq1  TGTACA-TTTTTGCACACTTTCCCTCAACAACACTACTTCTTGGACATAC  897
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATTTTTTGCACACTTTCCCTCAACAACACTACTTCTTGGACATAC  900

seq1  ATTAACAAAGATCATTCAATCTTTTAAAGATTGTCTAGGTATACTA-TTA  946
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTAACAAAGATCATTCAATCTTTTAAAGATTGTCTAGGTATACTATTTA  950

seq1  TATTAGATATTAAACCATTAGTATAAAA-TTCAGAAGGTCTCCTTCAAAT  995
      |||||||||||||||||||||||||||| ||||| ||||||||||| |||
seq2  TATTAGATATTAAACCATTAGTATAAAATTTCAG-AGGTCTCCTTC-AAT  998

seq1  CTAGATTACAATTTGTTTTA-TCTAATTAGAAA-TTTTACAGGGGAATGC  1043
      |||||||||||||  ||||| |||| ||||||| |||||||  || ||||
seq2  CTAGATTACAATTGTTTTTATTCTATTTAGAAATTTTTACA--GGTATGC  1046

seq1  CCGGAACAAGAAGCAGAAGTGGGTGAGT-AGGGGAGCAGGGCTG-AGGGA  1091
      || | || || ||||||||| ||||||| |||| |||||| ||| |||||
seq2  CCCGGAC-AGGAGCAGAAGTTGGTGAGTAAGGGAAGCAGGCCTGTAGGGA  1095

seq1  GGG  1094
      |||
seq2  GGG  1098


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