BAC Information

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BAC

Clone NameB6Ng01-307P04
ChromosomeX (Build37)
Map Location 126,631,420 - 126,765,006
singlet/doubletdoublet
Overlap geneDiap2
Upstream geneLOC100040550, LOC100040562, LOC100040570, LOC669120
Downstream geneLOC100040092, LOC665773, LOC665799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307P04.bB6Ng01-307P04.g
ACCGA100580GA100581
length1,0851,156
definitionB6Ng01-307P04.b B6Ng01-307P04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,763,937 - 126,765,006)(126,631,420 - 126,632,575)
sequence
gaattctttaaacacttgagaccctgagggacagggtctcaatggaaaca
tcctgaatttaccttgtacaactccattcacaatttattacctaccctaa
atccaattaaatgtaaccattcactgttccttagctttatgattttcaca
cttcttatcctcttaaatgcctctttggtatagaaagtctttcttatctc
tgtccttacttcagatacaaagctgaagccagttcctttgaggtagagga
taaacttccaaagcaagtgtttatctatagcttccgtgaggctaaggtgg
ataaatattaaaaatgaaaggctcatggggaaaatggatttcagactgtg
gatcttcagaaacatggcagaatcacagctacccatggaaaaggaaaata
gaatgtttcttcatgtggaggaggagagggccagtaaatatactattggg
aaatagcaaatattatatacttgcaggatagctgatactcccttctagtt
ctcaggtactagtagtgctgagaacactagttatttattaacattttatt
cttaaaggtaagatttcatcctgaatgggtaaacagttttggtgtaataa
agaacagttgcatgagaaggcttgaagttgtcaaatgacatctgacagga
caccatctctaccactcccatatctcattccctaatccaacaacacctct
gaccactgaagcaatgtaagggacaaaaggagctatgctaagttctggtg
tttttacttctaccatagcttccttgcttcttcacagagagagggaaagg
gaggagaggggaagatattatggcttcaatgatactatgttagaacattc
tacataaattttcagaaggtttactgcatcctccccccacacacacactt
tcctttcatttttgccaagagtttttagactgggatctcctcaaggtcta
ccctttgcttatgacatggggaaggctttgaaattgggcagttcataggc
aactgtattttcttaatggcctttagaacgacttttcccatgtggtctcg
aagaaatttgtggaattaagaccaccatcatccca

gaattctctacttttgaaatttttaaggacgtttcttgatgaatctccca
tttatttaaagtggttacaaacattttcagcaccagaatagagaaaaagt
gatgatttctgggactagctgtaggtcttacttggttcaccatgaaaact
gttttcatagaggatttaaatgaacccagctggcttaggattctgtgaat
tgctgtagtcattttctgagtttaatcttatgactgattttgaaattctc
acagtgggggaaagtcgaaaacatgagcagcatttagtgaatataattag
taagtttgaaaacaaatgcctttttattctataaaagctctgttcaaagg
ggatttaaaccctgtttgaaactgttgttcaagataaaacatggctactg
tgactgaatgtgaccagtcatgttacaagctggttttctagtcaaatgaa
gccttcctaatgaatgcattgcacaaccttaataaggagaaccaatgaca
gtgaaagaagtttataaagtgatagtttataccaaaataaaggtctgtga
ttactttagacaccttaggaattatttatatttatttacatactttttcc
atgctggtaattatagacatatttattgaatctttactctctgtgggacc
caatgctaggatttttttttgctgggaaaacaaaaaaatcaaacatattt
ccatttttttaatgagctagctggtgcatatagagcactgtaatgttaaa
ggcagacagaaggaacaatgcttatggggagggccatatggaaggtcctc
aatacagcagcacacatgaagaaataaatgatgttaaaaacataaagaat
aaataaataaattatgttgctcataaatgctgggtaactaactacccggg
taataatgtgtcacgtgagatgacatcccagactgtataacaactgtatt
cctgtgcaaagggagggatgataccagtcactagtacaacatagactttg
aactcttttttttcaatttgattgtctctgagcctcttaggagggtaagc
cacaaaaggatcatctttttgttttcgttctctagttcttttggatttct
ttattacatatgatctcaggatattatattttcgtttaaactatttttaa
attttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_126763937_126765006
seq2: B6Ng01-307P04.b_48_1132 (reverse)

seq1  TGGGATGATGGTGGTC-TAATT-CAC-AATTTCTCCGAGA-CACATGGGA  46
      |||||||||||||||| ||||| ||| ||||||| ||||| |||||||||
seq2  TGGGATGATGGTGGTCTTAATTCCACAAATTTCTTCGAGACCACATGGGA  50

seq1  AAAGGCCGTCCAAAGG-CATTA--GAAATACAGTGCCCTATGAAC--GCC  91
      |||| |  || ||||| |||||   |||||||||  |||||||||   ||
seq2  AAAGTCGTTCTAAAGGCCATTAAGAAAATACAGTTGCCTATGAACTGCCC  100

seq1  AATTTCAAAGCCT--CCCATGTCAT-AGCCAAGGGTAGGACCTGA-GAGA  137
      |||||||||||||  |||||||||| ||| ||||||||  | ||| ||||
seq2  AATTTCAAAGCCTTCCCCATGTCATAAGCAAAGGGTAGACCTTGAGGAGA  150

seq1  TCCCAGTCTAAAAACTC-TGGCAAAAATGAAAGGAAAGTGTGTGTGTGGG  186
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCCAGTCTAAAAACTCTTGGCAAAAATGAAAGGAAAGTGTGTGTGTGGG  200

seq1  GGGAGGATGCAGTAAACC-TCTTGAAATTTATGTAGAATGTTCTAACATA  235
      |||||||||||||||||| |||  ||||||||||||||||||||||||||
seq2  GGGAGGATGCAGTAAACCTTCTGAAAATTTATGTAGAATGTTCTAACATA  250

seq1  GTATCATTGAAGCCATAATATCTTCCCCTCTCCTCCCTTTCCCTCTCTCT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATTGAAGCCATAATATCTTCCCCTCTCCTCCCTTTCCCTCTCTCT  300

seq1  GTGAAGAAGCAAGGAAGCTATGGTAGAAGTAAAAACACCAGAACTTAGCA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAAGCAAGGAAGCTATGGTAGAAGTAAAAACACCAGAACTTAGCA  350

seq1  TAGCTCCTTTTGTCCCTTACATTGCTTCAGTGGTCAGAGGTGTTGTTGGA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTTTTGTCCCTTACATTGCTTCAGTGGTCAGAGGTGTTGTTGGA  400

seq1  TTAGGGAATGAGATATGGGAGTGGTAGAGATGGTGTCCTGTCAGATGTCA  435
      ||                 |||||||||||||||||||||||||||||||
seq2  TTNNNNNNNNNNNNNNNNNAGTGGTAGAGATGGTGTCCTGTCAGATGTCA  450

seq1  TTTGACAACTTCAAGCCTTCTCATGCAACTGTTCTTTATTACACCAAAAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAACTTCAAGCCTTCTCATGCAACTGTTCTTTATTACACCAAAAC  500

seq1  TGTTTACCCATTCAGGATGAAATCTTACCTTTAAGAATAAAATGTTAATA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACCCATTCAGGATGAAATCTTACCTTTAAGAATAAAATGTTAATA  550

seq1  AATAACTAGTGTTCTCAGCACTACTAGTACCTGAGAACTAGAAGGGAGTA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTAGTGTTCTCAGCACTACTAGTACCTGAGAACTAGAAGGGAGTA  600

seq1  TCAGCTATCCTGCAAGTATATAATATTTGCTATTTCCCAATAGTATATTT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTATCCTGCAAGTATATAATATTTGCTATTTCCCAATAGTATATTT  650

seq1  ACTGGCCCTCTCCTCCTCCACATGAAGAAACATTCTATTTTCCTTTTCCA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCCTCTCCTCCTCCACATGAAGAAACATTCTATTTTCCTTTTCCA  700

seq1  TGGGTAGCTGTGATTCTGCCATGTTTCTGAAGATCCACAGTCTGAAATCC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGCTGTGATTCTGCCATGTTTCTGAAGATCCACAGTCTGAAATCC  750

seq1  ATTTTCCCCATGAGCCTTTCATTTTTAATATTTATCCACCTTAGCCTCAC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCCATGAGCCTTTCATTTTTAATATTTATCCACCTTAGCCTCAC  800

seq1  GGAAGCTATAGATAAACACTTGCTTTGGAAGTTTATCCTCTACCTCAAAG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTATAGATAAACACTTGCTTTGGAAGTTTATCCTCTACCTCAAAG  850

seq1  GAACTGGCTTCAGCTTTGTATCTGAAGTAAGGACAGAGATAAGAAAGACT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGCTTCAGCTTTGTATCTGAAGTAAGGACAGAGATAAGAAAGACT  900

seq1  TTCTATACCAAAGAGGCATTTAAGAGGATAAGAAGTGTGAAAATCATAAA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATACCAAAGAGGCATTTAAGAGGATAAGAAGTGTGAAAATCATAAA  950

seq1  GCTAAGGAACAGTGAATGGTTACATTTAATTGGATTTAGGGTAGGTAATA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGAACAGTGAATGGTTACATTTAATTGGATTTAGGGTAGGTAATA  1000

seq1  AATTGTGAATGGAGTTGTACAAGGTAAATTCAGGATGTTTCCATTGAGAC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGAATGGAGTTGTACAAGGTAAATTCAGGATGTTTCCATTGAGAC  1050

seq1  CCTGTCCCTCAGGGTCTCAAGTGTTTAAAGAATTC  1070
      |||||||||||||||||||||||||||||||||||
seq2  CCTGTCCCTCAGGGTCTCAAGTGTTTAAAGAATTC  1085


seq1: chrX_126631420_126632575
seq2: B6Ng01-307P04.g_66_1221

seq1  GAATTCTCTACTTTTGAAATTTTTAAGGACGTTTCTTGATGAATCTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTTTTGAAATTTTTAAGGACGTTTCTTGATGAATCTCCCA  50

seq1  TTTATTTAAAGTGGTTACAAACATTTTCAGCACCAGAATAGAGAAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAAAGTGGTTACAAACATTTTCAGCACCAGAATAGAGAAAAAGT  100

seq1  GATGATTTCTGGGACTAGCTGTAGGTCTTACTTGGTTCACCATGAAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTCTGGGACTAGCTGTAGGTCTTACTTGGTTCACCATGAAAACT  150

seq1  GTTTTCATAGAGGATTTAAATGAACCCAGCTGGCTTAGGATTCTGTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATAGAGGATTTAAATGAACCCAGCTGGCTTAGGATTCTGTGAAT  200

seq1  TGCTGTAGTCATTTTCTGAGTTTAATCTTATGACTGATTTTGAAATTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAGTCATTTTCTGAGTTTAATCTTATGACTGATTTTGAAATTCTC  250

seq1  ACAGTGGGGGAAAGTCGAAAACATGAGCAGCATTTAGTGAATATAATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGGGAAAGTCGAAAACATGAGCAGCATTTAGTGAATATAATTAG  300

seq1  TAAGTTTGAAAACAAATGCCTTTTTATTCTATAAAAGCTCTGTTCAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTGAAAACAAATGCCTTTTTATTCTATAAAAGCTCTGTTCAAAGG  350

seq1  GGATTTAAACCCTGTTTGAAACTGTTGTTCAAGATAAAACATGGCTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAAACCCTGTTTGAAACTGTTGTTCAAGATAAAACATGGCTACTG  400

seq1  TGACTGAATGTGACCAGTCATGTTACAAGCTGGTTTTCTAGTCAAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAATGTGACCAGTCATGTTACAAGCTGGTTTTCTAGTCAAATGAA  450

seq1  GCCTTCCTAATGAATGCATTGCACAACCTTAATAAGGAGAACCAATGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTAATGAATGCATTGCACAACCTTAATAAGGAGAACCAATGACA  500

seq1  GTGAAAGAAGTTTATAAAGTGATAGTTTATACCAAAATAAAGGTCTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGAAGTTTATAAAGTGATAGTTTATACCAAAATAAAGGTCTGTGA  550

seq1  TTACTTTAGACACCTTAGGAATTATTTATATTTATTTACATACTTTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTAGACACCTTAGGAATTATTTATATTTATTTACATACTTTTTCC  600

seq1  ATGCTGGTAATTATAGACATATTTATTGAATCTTTACTCTCTGTGGGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGTAATTATAGACATATTTATTGAATCTTTACTCTCTGTGGGACC  650

seq1  CAATGCTAGGATTTTTTTTTGCTGGGAAAACAAAAAAATCAAACATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTAGGATTTTTTTTTGCTGGGAAAACAAAAAAATCAAACATATTT  700

seq1  CCATTTTTTTAATGAGCTAGCTGGTGCATATAGAGCACTGTAATGTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTTTAATGAGCTAGCTGGTGCATATAGAGCACTGTAATGTTAAA  750

seq1  GGCAGACAGAAGGAACAATGCTTATGGGGAGGGCCATATGGAAGGTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACAGAAGGAACAATGCTTATGGGGAGGGCCATATGGAAGGTCCTC  800

seq1  AATACAGCAGCACACATGAAGAAATAAATGATGTTAAAAACATAAAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCAGCACACATGAAGAAATAAATGATGTTAAAAACATAAAGAAT  850

seq1  AAATAAATAAATTATGTTGCTCATAAATGCTGGGTAACTAACTACCC-GG  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATAAATAAATTATGTTGCTCATAAATGCTGGGTAACTAACTACCCGGG  900

seq1  TAATAATGTGTCACGTGAGATGACATCCCAGACTGTATAACAACTGTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGTGTCACGTGAGATGACATCCCAGACTGTATAACAACTGTATT  950

seq1  CCTGTGCAAAGGGAAGGGATGATACCAGTCACTAGTACAACATAGACTTT  999
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCAAAGGG-AGGGATGATACCAGTCACTAGTACAACATAGACTTT  999

seq1  GAAC-CTCTTTTTTCAATTTGATTGTCTCTGAAGCCTCTTAGGAGGGTAA  1048
      |||| || ||||||||||||||||||||||| ||||||||||||||||||
seq2  GAACTCTTTTTTTTCAATTTGATTGTCTCTG-AGCCTCTTAGGAGGGTAA  1048

seq1  G-CACAAAAGATTAATCTTTTTGTTTTCTTTCTCTAAGTTCTTTT-GATT  1096
      | ||||||||  | |||||||||||||| |||||| ||||||||| ||||
seq2  GCCACAAAAGGATCATCTTTTTGTTTTCGTTCTCT-AGTTCTTTTGGATT  1097

seq1  TCTTTATTTACATTATGGTATCTCAGAATA-TATATTTCCTTTAAAACTA  1145
      |||||| ||||| ||||  ||||||| ||| ||||||| | || ||||||
seq2  TCTTTA-TTACA-TATG--ATCTCAGGATATTATATTTTCGTTTAAACTA  1143

seq1  TTTT--AATTTTC  1156
      ||||  |||||||
seq2  TTTTTAAATTTTC  1156


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